Wall clock time and date at job start Mon Mar 30 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48509 * 109.47126 * 274.70584 * 3 2 1 5 5 H 1.48501 * 109.47553 * 34.70388 * 3 2 1 6 6 H 1.48498 * 109.47486 * 154.70425 * 3 2 1 7 7 C 1.39896 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 161.75553 * 7 2 1 9 9 C 1.40478 * 120.00270 * 341.76338 * 7 2 1 10 10 C 1.40413 * 120.32846 * 334.76143 * 9 7 2 11 11 C 1.37434 * 120.20369 * 180.26731 * 10 9 7 12 12 C 1.50704 * 119.50330 * 179.72515 * 11 10 9 13 13 O 1.42902 * 109.47284 * 359.73416 * 12 11 10 14 14 C 1.38808 * 120.99547 * 359.46105 * 11 10 9 15 15 O 1.35687 * 119.35655 * 180.29619 * 14 11 10 16 16 C 1.40260 * 121.29666 * 0.26378 * 14 11 10 17 17 S 1.76059 * 130.59488 * 180.02562 * 16 14 11 18 18 C 1.75519 * 91.49957 * 180.02562 * 17 16 14 19 19 C 1.32671 * 110.62608 * 0.02562 * 18 17 16 20 20 C 1.39462 * 120.05303 * 0.02562 * 16 14 11 21 21 H 0.96996 * 120.00491 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.90116 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47250 * 239.73420 * 12 11 10 24 24 H 1.09004 * 109.46826 * 119.73256 * 12 11 10 25 25 H 0.96694 * 113.99700 * 179.97438 * 13 12 11 26 26 H 0.96704 * 114.00331 * 89.98836 * 15 14 11 27 27 H 1.07995 * 124.68515 * 179.97438 * 18 17 16 28 28 H 1.08002 * 122.09522 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3911 2.1040 -1.3954 5 1 1.4938 2.6220 0.7971 6 1 3.5868 1.4138 0.5982 7 6 2.0087 -1.2115 0.0005 8 1 3.0480 -1.2350 -0.2923 9 6 1.3594 -2.3974 0.3818 10 6 0.2461 -2.3530 1.2363 11 6 -0.3839 -3.5153 1.6120 12 6 -1.5736 -3.4497 2.5347 13 8 -1.8381 -2.0872 2.8749 14 6 0.0558 -4.7482 1.1501 15 8 -0.5946 -5.8742 1.5375 16 6 1.1589 -4.8529 0.2902 17 16 1.9159 -6.2674 -0.4351 18 6 3.1069 -5.2689 -1.2507 19 6 2.9124 -3.9867 -0.9709 20 6 1.8382 -3.7052 -0.1175 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1139 -1.4030 1.6025 23 1 -1.3617 -4.0161 3.4417 24 1 -2.4443 -3.8752 2.0357 25 1 -2.5930 -1.9693 3.4675 26 1 -1.3203 -6.1305 0.9519 27 1 3.8904 -5.6463 -1.8911 28 1 3.5423 -3.2089 -1.3766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:18 Heat of formation + Delta-G solvation = -81.123199 kcal Electronic energy + Delta-G solvation = -15788.992560 eV Core-core repulsion = 13088.132804 eV Total energy + Delta-G solvation = -2700.859755 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36556 -38.05509 -37.62509 -36.21421 -34.50698 -31.35063 -30.44479 -27.22273 -26.23797 -23.82556 -22.59641 -20.88978 -19.42113 -19.05122 -18.39502 -17.30147 -16.67905 -16.25279 -15.98290 -15.62070 -15.42412 -14.73883 -14.58675 -14.18272 -13.86276 -13.38039 -13.27608 -12.91459 -12.52066 -12.37923 -12.19093 -11.82331 -11.62979 -11.52637 -11.19431 -11.07335 -10.76761 -9.94346 -9.03114 -8.80529 -8.45038 -6.32589 0.11467 0.75676 0.95907 1.36471 1.38605 1.45981 1.54641 1.77241 2.14156 2.51621 3.45317 3.51674 3.78857 4.18490 4.32105 4.47806 4.63927 4.68353 4.81723 4.99942 5.08110 5.26372 5.36442 5.51737 5.78125 5.88852 5.95266 6.15917 6.46231 6.68882 6.73632 7.07104 7.16546 8.12110 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.010061 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.860834 B = 2782.301966 C = 4166.542617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.113 3.887 10 C -0.187 4.187 11 C -0.071 4.071 12 C 0.138 3.862 13 O -0.581 6.581 14 C -0.035 4.035 15 O -0.493 6.493 16 C -0.120 4.120 17 S 0.053 5.947 18 C -0.257 4.257 19 C -0.086 4.086 20 C -0.211 4.211 21 H 0.297 0.703 22 H 0.125 0.875 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.393 0.607 26 H 0.372 0.628 27 H 0.185 0.815 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -2.385 0.709 2.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.188 4.188 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.478 4.478 8 H 0.108 0.892 9 C 0.108 3.892 10 C -0.209 4.209 11 C -0.074 4.074 12 C 0.060 3.940 13 O -0.389 6.389 14 C -0.086 4.086 15 O -0.302 6.302 16 C -0.235 4.235 17 S 0.313 5.687 18 C -0.389 4.389 19 C -0.115 4.115 20 C -0.218 4.218 21 H 0.108 0.892 22 H 0.143 0.857 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.242 0.758 26 H 0.226 0.774 27 H 0.202 0.798 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.712 -3.699 0.754 3.842 hybrid contribution -0.405 1.969 -0.182 2.019 sum -1.117 -1.730 0.572 2.137 Atomic orbital electron populations 1.69914 1.09244 1.31716 1.29917 1.26990 0.95579 1.05009 0.91174 0.85073 0.79207 0.75069 0.79804 1.18121 1.18710 1.17915 1.19867 0.98869 0.91948 1.37085 0.89240 1.18930 0.91240 0.90530 0.88481 1.20791 1.00271 0.97467 1.02378 1.19806 0.97178 0.92203 0.98185 1.20595 0.94381 0.82746 0.96248 1.86589 1.55103 1.26196 1.70965 1.16728 0.98332 0.85189 1.08398 1.84782 1.50142 1.41800 1.53449 1.22954 1.01416 0.96806 1.02327 1.83231 1.28432 1.08455 1.48540 1.25085 1.06950 0.95696 1.11201 1.19840 0.97070 0.96736 0.97901 1.19454 1.02328 0.93304 1.06707 0.89157 0.85722 0.91862 0.91539 0.75795 0.77412 0.79789 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.29 11.02 21.82 0.24 -39.05 15 2 C 0.03 1.56 5.11 85.23 0.44 1.99 15 3 Si 0.99 35.69 29.60 68.60 2.03 37.72 15 4 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 6 H -0.26 -9.09 7.11 99.48 0.71 -8.39 15 7 C -0.45 -23.37 8.80 23.22 0.20 -23.16 15 8 H 0.09 4.38 7.53 -2.91 -0.02 4.36 15 9 C 0.11 6.18 5.75 -19.63 -0.11 6.06 15 10 C -0.19 -10.05 7.97 22.61 0.18 -9.87 15 11 C -0.07 -3.38 5.87 -19.92 -0.12 -3.50 15 12 C 0.14 5.17 6.82 71.24 0.49 5.65 15 13 O -0.58 -21.52 12.07 -148.98 -1.80 -23.32 15 14 C -0.03 -1.63 6.70 22.90 0.15 -1.48 15 15 O -0.49 -19.42 12.79 -90.05 -1.15 -20.57 15 16 C -0.12 -5.78 6.43 23.06 0.15 -5.63 15 17 S 0.05 2.09 23.26 -56.49 -1.31 0.77 15 18 C -0.26 -9.73 11.11 66.65 0.74 -8.99 15 19 C -0.09 -3.79 9.75 21.54 0.21 -3.58 15 20 C -0.21 -10.79 6.02 -19.97 -0.12 -10.91 15 21 H 0.30 13.26 8.30 -92.71 -0.77 12.49 15 22 H 0.13 6.96 5.07 -2.91 -0.01 6.95 15 23 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.39 9.30 9.12 -74.06 -0.68 8.62 15 26 H 0.37 11.37 9.06 -74.05 -0.67 10.70 15 27 H 0.18 5.44 8.06 -2.91 -0.02 5.41 15 28 H 0.13 5.50 7.72 -2.91 -0.02 5.48 15 Total: -1.00 -64.45 261.55 0.10 -64.36 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.12 Total: 33.51 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 2.21 Total: -53.42 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.24 Total: -39.05 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -2.95 Total: -43.89 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.31 Total: 0.77 kcal Total: -64.45 0.10 -64.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.768 kcal (2) G-P(sol) polarization free energy of solvation -64.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds