Wall clock time and date at job start Mon Mar 30 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48501 * 109.47098 * 270.00394 * 3 2 1 5 5 H 1.48493 * 109.47055 * 30.00269 * 3 2 1 6 6 H 1.48498 * 109.46917 * 150.00717 * 3 2 1 7 7 C 1.39923 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00182 * 164.06363 * 7 2 1 9 9 C 1.40555 * 120.00000 * 344.05384 * 7 2 1 10 10 C 1.40397 * 120.40880 * 332.94502 * 9 7 2 11 11 C 1.37566 * 120.13175 * 179.97438 * 10 9 7 12 12 C 1.38207 * 121.09654 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.26868 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.47183 * 0.02562 * 13 12 11 15 15 C 1.39561 * 121.45558 * 0.02562 * 12 11 10 16 16 S 1.76053 * 130.56436 * 180.31974 * 15 12 11 17 17 C 1.75501 * 91.57642 * 180.02562 * 16 15 12 18 18 C 1.33182 * 110.66116 * 359.65676 * 17 16 15 19 19 O 1.36117 * 122.15923 * 180.28534 * 18 17 16 20 20 C 1.39820 * 120.04514 * 359.97438 * 15 12 11 21 21 H 0.96996 * 119.99564 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.93134 * 359.95218 * 10 9 7 23 23 H 1.07994 * 119.45400 * 179.97438 * 11 10 9 24 24 H 1.08997 * 109.46500 * 120.00754 * 13 12 11 25 25 H 1.08996 * 109.47244 * 240.00289 * 13 12 11 26 26 H 0.96704 * 113.99725 * 179.97438 * 14 13 12 27 27 H 1.08000 * 124.66496 * 179.91517 * 17 16 15 28 28 H 0.96695 * 114.00063 * 89.97808 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4404 2.6526 0.7001 6 1 3.5404 1.4400 0.6999 7 6 2.0084 -1.2118 -0.0005 8 1 3.0572 -1.2297 -0.2574 9 6 1.3461 -2.4057 0.3333 10 6 0.2264 -2.3845 1.1801 11 6 -0.4177 -3.5564 1.5027 12 6 0.0173 -4.7703 1.0055 13 6 -0.7189 -6.0290 1.3863 14 8 -1.8070 -5.7008 2.2525 15 6 1.1239 -4.8564 0.1596 16 16 1.8721 -6.2528 -0.6084 17 6 3.0861 -5.2424 -1.3736 18 6 2.9006 -3.9625 -1.0555 19 8 3.7087 -2.9742 -1.5278 20 6 1.8192 -3.6989 -0.2036 21 1 -0.4849 0.8401 0.0004 22 1 -0.1296 -1.4462 1.5792 23 1 -1.2777 -3.5274 2.1554 24 1 -1.1031 -6.5111 0.4874 25 1 -0.0375 -6.7074 1.8994 26 1 -2.3267 -6.4648 2.5379 27 1 3.8725 -5.6079 -2.0174 28 1 3.4136 -2.5913 -2.3652 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335470.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:56 Heat of formation + Delta-G solvation = -60.119059 kcal Electronic energy + Delta-G solvation = -15736.712664 eV Core-core repulsion = 13036.763716 eV Total energy + Delta-G solvation = -2699.948947 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.66213 -37.01885 -35.78489 -34.14900 -32.41079 -30.36492 -28.13195 -26.56832 -23.76955 -22.38111 -20.60974 -19.64309 -17.92938 -16.84973 -16.38283 -15.77430 -15.18424 -14.59446 -14.43498 -14.27850 -14.03599 -13.17511 -12.97303 -12.20359 -11.79038 -11.78151 -11.49856 -11.33618 -11.17674 -10.88033 -10.58898 -10.26923 -9.99336 -9.72217 -9.56492 -9.33221 -9.21948 -8.05409 -7.34434 -7.07799 -6.72220 -4.52047 1.84102 2.57210 2.58625 2.92771 2.94420 2.97884 3.04402 3.44248 3.72196 4.33595 4.79857 5.26775 5.44514 5.78815 5.85409 6.07478 6.09067 6.40061 6.48186 6.80237 6.83970 7.05214 7.15935 7.27051 7.50458 7.77358 7.82208 7.94161 8.18020 8.37202 8.45682 8.57605 8.68758 9.82198 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.009243 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.539641 B = 3028.460498 C = 4230.545352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.419 4.419 8 H 0.101 0.899 9 C 0.160 3.840 10 C -0.194 4.194 11 C -0.032 4.032 12 C -0.213 4.213 13 C 0.143 3.857 14 O -0.567 6.567 15 C -0.054 4.054 16 S 0.017 5.983 17 C -0.324 4.324 18 C 0.174 3.826 19 O -0.486 6.486 20 C -0.221 4.221 21 H 0.288 0.712 22 H 0.122 0.878 23 H 0.108 0.892 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.368 0.632 27 H 0.149 0.851 28 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -4.123 -0.692 4.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.446 4.446 8 H 0.119 0.881 9 C 0.155 3.845 10 C -0.216 4.216 11 C -0.053 4.053 12 C -0.222 4.222 13 C 0.065 3.935 14 O -0.371 6.371 15 C -0.168 4.168 16 S 0.275 5.725 17 C -0.457 4.457 18 C 0.119 3.881 19 O -0.296 6.296 20 C -0.227 4.227 21 H 0.099 0.901 22 H 0.140 0.860 23 H 0.126 0.874 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.213 0.787 27 H 0.167 0.833 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.132 -4.994 -0.384 5.011 hybrid contribution 0.162 1.655 -0.503 1.738 sum 0.294 -3.339 -0.887 3.467 Atomic orbital electron populations 1.69866 1.07897 1.30296 1.30673 1.26194 0.94884 1.02140 0.92086 0.86124 0.80708 0.79384 0.79643 1.19058 1.19786 1.17951 1.19948 0.98620 0.90384 1.35619 0.88081 1.18446 0.89986 0.89204 0.86871 1.21087 1.00227 0.97092 1.03165 1.20351 0.97179 0.91339 0.96440 1.18036 1.00398 0.94173 1.09558 1.20575 0.86754 0.95049 0.91101 1.86515 1.45322 1.36705 1.68512 1.21637 0.99165 0.94660 1.01387 1.83292 1.26982 1.10903 1.51274 1.24525 1.09071 0.96320 1.15815 1.17024 0.89610 0.86611 0.94890 1.84769 1.49730 1.52305 1.42775 1.19174 1.00883 0.94350 1.08311 0.90066 0.86005 0.87411 0.94656 0.94620 0.78687 0.83346 0.76315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.36 11.01 55.55 0.61 -17.75 15 2 C 0.07 1.60 5.15 -17.33 -0.09 1.51 15 3 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 15 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.49 15 7 C -0.42 -10.48 8.49 -38.08 -0.32 -10.80 15 8 H 0.10 2.48 6.32 -52.49 -0.33 2.15 15 9 C 0.16 4.20 5.73 -104.30 -0.60 3.60 15 10 C -0.19 -4.98 8.64 -39.01 -0.34 -5.32 15 11 C -0.03 -0.78 9.29 -39.84 -0.37 -1.15 15 12 C -0.21 -4.92 5.91 -104.14 -0.62 -5.54 15 13 C 0.14 2.67 7.07 36.01 0.25 2.92 15 14 O -0.57 -9.73 12.04 -35.23 -0.42 -10.15 15 15 C -0.05 -1.27 6.30 -38.50 -0.24 -1.51 15 16 S 0.02 0.33 22.96 -107.50 -2.47 -2.14 15 17 C -0.32 -6.65 11.08 28.97 0.32 -6.32 15 18 C 0.17 3.95 6.68 -40.62 -0.27 3.68 15 19 O -0.49 -10.08 11.42 -20.11 -0.23 -10.31 15 20 C -0.22 -5.55 6.03 -104.67 -0.63 -6.19 15 21 H 0.29 6.21 8.30 -40.82 -0.34 5.87 15 22 H 0.12 3.15 6.27 -52.49 -0.33 2.82 15 23 H 0.11 2.45 6.89 -52.49 -0.36 2.09 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 15 26 H 0.37 4.11 9.12 45.56 0.42 4.52 15 27 H 0.15 2.65 8.06 -52.49 -0.42 2.23 15 28 H 0.38 6.32 9.07 45.56 0.41 6.73 15 LS Contribution 259.02 15.07 3.90 3.90 Total: -1.00 -28.90 259.02 -7.14 -36.04 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -0.60 Total: 13.17 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.90 Total: -25.11 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.61 Total: -17.75 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.65 Total: -20.46 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.47 Total: -2.14 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.90 -7.14 -36.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335470.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.078 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds