Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48499 * 109.47120 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47356 * 119.99624 * 3 2 1 6 6 H 1.48507 * 109.47110 * 239.99803 * 3 2 1 7 7 C 1.39860 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00385 * 206.82902 * 7 2 1 9 9 C 1.41116 * 120.00068 * 26.83289 * 7 2 1 10 10 C 1.39874 * 120.09619 * 25.12849 * 9 7 2 11 11 C 1.40380 * 120.21315 * 180.02562 * 10 9 7 12 12 C 1.45669 * 129.06314 * 179.97438 * 11 10 9 13 13 C 1.50697 * 122.54154 * 0.04791 * 12 11 10 14 14 O 1.42898 * 109.47118 * 180.02562 * 13 12 11 15 15 C 1.31608 * 114.91753 * 180.02562 * 12 11 10 16 16 S 1.75256 * 111.55632 * 0.02562 * 15 12 11 17 17 C 1.40289 * 119.23116 * 359.97438 * 11 10 9 18 18 C 1.40220 * 120.26025 * 359.97438 * 17 11 10 19 19 C 1.37296 * 120.65990 * 359.74406 * 18 17 11 20 20 O 1.35758 * 120.08863 * 180.27522 * 19 18 17 21 21 H 0.96994 * 119.99613 * 185.78744 * 1 2 3 22 22 H 1.08006 * 119.89034 * 0.02562 * 10 9 7 23 23 H 1.09011 * 109.47111 * 299.99434 * 13 12 11 24 24 H 1.08993 * 109.47461 * 59.99634 * 13 12 11 25 25 H 0.96702 * 113.99886 * 179.97438 * 14 13 12 26 26 H 1.07994 * 124.22456 * 180.02562 * 15 12 11 27 27 H 1.07999 * 119.66942 * 180.02562 * 18 17 11 28 28 H 0.96706 * 114.00308 * 270.60476 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 1.2783 2.7464 -0.0006 5 1 3.0969 1.6965 1.2125 6 1 3.0971 1.6964 -1.2125 7 6 2.0086 -1.2112 0.0005 8 1 3.0014 -1.2614 0.4227 9 6 1.4170 -2.3678 -0.5506 10 6 0.4261 -2.2497 -1.5307 11 6 -0.1645 -3.3986 -2.0802 12 6 -1.2012 -3.5003 -3.0985 13 6 -1.8228 -2.2899 -3.7461 14 8 -2.8025 -2.7094 -4.6981 15 6 -1.5534 -4.7294 -3.4103 16 16 -0.6498 -5.9125 -2.4854 17 6 0.2515 -4.6623 -1.6352 18 6 1.2461 -4.7735 -0.6531 19 6 1.8299 -3.6521 -0.1177 20 8 2.7958 -3.7734 0.8285 21 1 -0.4849 -0.8357 0.0847 22 1 0.1143 -1.2714 -1.8657 23 1 -2.2988 -1.6737 -2.9831 24 1 -1.0498 -1.7106 -4.2509 25 1 -3.2448 -1.9806 -5.1544 26 1 -2.3054 -4.9781 -4.1444 27 1 1.5594 -5.7512 -0.3178 28 1 2.4581 -3.7985 1.7344 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396335591.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = -69.578938 kcal Electronic energy + Delta-G solvation = -15635.326860 eV Core-core repulsion = 12934.967702 eV Total energy + Delta-G solvation = -2700.359158 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.80898 -37.29268 -35.83075 -34.65222 -32.71855 -29.59760 -27.88231 -26.69390 -25.00806 -21.70584 -21.40465 -19.14560 -18.07223 -17.28059 -17.13243 -15.94101 -15.06143 -14.69033 -14.50441 -14.20326 -13.99754 -13.60792 -12.69938 -12.52289 -12.22322 -11.96503 -11.87580 -11.34908 -11.13423 -10.71977 -10.50413 -10.25820 -10.12598 -10.00939 -9.75996 -9.29632 -9.02246 -8.46229 -7.58727 -7.30265 -6.88998 -4.57309 1.68362 2.43950 2.45892 2.90464 3.01720 3.08247 3.19954 3.28752 3.89285 4.29042 4.39721 5.05978 5.40941 5.52684 5.60235 5.78729 5.81301 5.91241 6.41565 6.54029 6.60512 6.89131 7.04356 7.11706 7.33691 7.46845 7.60140 7.77197 7.86842 7.93201 8.31023 8.62309 8.82575 9.84569 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.008707 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.709194 B = 3215.133223 C = 4423.187640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.038 3.962 3 Si 1.065 2.935 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.086 0.914 9 C 0.079 3.921 10 C -0.198 4.198 11 C -0.027 4.027 12 C -0.098 4.098 13 C 0.138 3.862 14 O -0.574 6.574 15 C -0.172 4.172 16 S 0.003 5.997 17 C -0.229 4.229 18 C -0.076 4.076 19 C 0.022 3.978 20 O -0.492 6.492 21 H 0.300 0.700 22 H 0.114 0.886 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.378 0.622 26 H 0.158 0.842 27 H 0.104 0.896 28 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -1.322 -3.056 4.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.185 4.185 3 Si 0.888 3.112 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.527 4.527 8 H 0.104 0.896 9 C 0.074 3.926 10 C -0.221 4.221 11 C -0.033 4.033 12 C -0.111 4.111 13 C 0.059 3.941 14 O -0.379 6.379 15 C -0.305 4.305 16 S 0.264 5.736 17 C -0.343 4.343 18 C -0.099 4.099 19 C -0.024 4.024 20 O -0.300 6.300 21 H 0.114 0.886 22 H 0.132 0.868 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.225 0.775 26 H 0.176 0.824 27 H 0.122 0.878 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.410 -1.865 -3.372 4.545 hybrid contribution -0.326 0.245 0.263 0.485 sum -2.736 -1.620 -3.109 4.447 Atomic orbital electron populations 1.70509 1.08217 1.34396 1.27689 1.27140 0.95597 1.04557 0.91190 0.83624 0.75709 0.73527 0.78306 1.19759 1.19903 1.19799 1.20516 1.03999 0.93683 1.34454 0.89581 1.17693 0.91262 0.92156 0.91463 1.20721 1.04687 0.95410 1.01274 1.18695 0.95488 0.93462 0.95683 1.19539 0.98466 0.94263 0.98853 1.20551 0.89888 0.93359 0.90339 1.86403 1.56423 1.37499 1.57594 1.24422 1.05344 0.95492 1.05261 1.83362 1.39317 1.10460 1.40511 1.21500 1.08564 0.94355 1.09857 1.20114 0.95266 0.97270 0.97234 1.18213 0.96142 0.91777 0.96302 1.84758 1.32479 1.95747 1.16967 0.88645 0.86849 0.92096 0.92368 0.77517 0.82430 0.87829 0.78225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.54 12.31 55.54 0.68 -18.86 15 2 C 0.04 0.91 4.88 -17.33 -0.08 0.83 15 3 Si 1.07 20.43 30.01 -169.99 -5.10 15.32 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.27 -5.00 7.11 56.52 0.40 -4.59 15 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.50 -12.63 8.62 -37.88 -0.33 -12.95 15 8 H 0.09 2.18 7.70 -52.49 -0.40 1.77 15 9 C 0.08 2.01 5.30 -106.88 -0.57 1.44 15 10 C -0.20 -4.91 7.79 -38.16 -0.30 -5.21 15 11 C -0.03 -0.64 6.01 -105.36 -0.63 -1.27 15 12 C -0.10 -2.01 5.97 -103.52 -0.62 -2.63 15 13 C 0.14 2.37 7.32 36.00 0.26 2.63 15 14 O -0.57 -8.45 12.47 -35.23 -0.44 -8.89 15 15 C -0.17 -3.33 10.25 28.87 0.30 -3.03 15 16 S 0.00 0.06 23.23 -107.50 -2.50 -2.44 15 17 C -0.23 -5.24 6.50 -38.07 -0.25 -5.48 15 18 C -0.08 -1.73 9.97 -39.18 -0.39 -2.12 15 19 C 0.02 0.54 6.71 -38.61 -0.26 0.28 15 20 O -0.49 -10.72 12.77 -18.98 -0.24 -10.96 15 21 H 0.30 7.69 6.79 -40.82 -0.28 7.41 15 22 H 0.11 2.83 6.45 -52.48 -0.34 2.49 15 23 H 0.06 1.03 8.14 -51.92 -0.42 0.61 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.38 3.51 9.12 45.56 0.42 3.93 15 26 H 0.16 2.75 7.40 -52.49 -0.39 2.36 15 27 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.36 6.32 9.06 45.56 0.41 6.74 15 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -28.77 262.30 -7.15 -35.92 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.64 Total: 13.47 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -2.86 Total: -27.51 kcal Atomic # 7 Polarization: -19.54 SS G_CDS: 0.68 Total: -18.86 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.68 Total: -19.86 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.10 Total: 15.32 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.50 Total: -2.44 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.77 -7.15 -35.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335591.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.659 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds