Wall clock time and date at job start Mon Mar 30 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31089 * 1 3 3 Si 1.86808 * 119.99740 * 2 1 4 4 H 1.48497 * 109.46839 * 240.00338 * 3 2 1 5 5 H 1.48496 * 109.46941 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46942 * 120.00060 * 3 2 1 7 7 C 1.39694 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99981 * 164.90667 * 7 2 1 9 9 C 1.40811 * 120.00090 * 344.90641 * 7 2 1 10 10 C 1.36447 * 123.30032 * 339.20599 * 9 7 2 11 11 S 1.69982 * 111.93266 * 179.97438 * 10 9 7 12 12 C 1.75780 * 93.22534 * 359.97438 * 11 10 9 13 13 C 1.39234 * 110.20702 * 0.02562 * 12 11 10 14 14 C 1.40663 * 119.27098 * 180.02562 * 13 12 11 15 15 C 1.37459 * 120.42384 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.84359 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47066 * 269.97562 * 16 15 14 18 18 C 1.38577 * 120.31719 * 0.02562 * 15 14 13 19 19 C 1.38137 * 120.12036 * 0.02562 * 18 15 14 20 20 O 1.35925 * 119.86884 * 179.97438 * 19 18 15 21 21 H 0.97003 * 119.99904 * 359.97438 * 1 2 3 22 22 H 1.08000 * 124.03481 * 359.97438 * 10 9 7 23 23 H 1.08001 * 119.78870 * 179.97438 * 14 13 12 24 24 H 1.09000 * 109.47226 * 29.97522 * 16 15 14 25 25 H 1.09002 * 109.47383 * 149.97673 * 16 15 14 26 26 H 0.96701 * 114.00425 * 179.97438 * 17 16 15 27 27 H 1.07996 * 119.93970 * 180.02562 * 18 15 14 28 28 H 0.96696 * 113.99267 * 270.02189 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 3.0985 1.6965 -1.2125 5 1 1.2798 2.7465 0.0006 6 1 3.0986 1.6965 1.2125 7 6 2.0094 -1.2098 -0.0005 8 1 3.0614 -1.2258 -0.2441 9 6 1.3418 -2.4084 0.3165 10 6 0.1705 -2.4513 1.0151 11 16 -0.3801 -4.0445 1.2340 12 6 0.9825 -4.7399 0.3683 13 6 1.8367 -3.7328 -0.0728 14 6 2.9949 -4.0792 -0.7920 15 6 3.2817 -5.3972 -1.0566 16 6 4.5264 -5.7537 -1.8277 17 8 4.2284 -5.7857 -3.2249 18 6 2.4317 -6.3999 -0.6177 19 6 1.2889 -6.0797 0.0892 20 8 0.4585 -7.0672 0.5168 21 1 -0.4850 0.8401 0.0004 22 1 -0.3451 -1.5774 1.3849 23 1 3.6631 -3.3047 -1.1385 24 1 5.2977 -5.0072 -1.6378 25 1 4.8829 -6.7334 -1.5097 26 1 4.9854 -6.0088 -3.7837 27 1 2.6632 -7.4334 -0.8286 28 1 -0.2345 -7.2998 -0.1162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396335996.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:04 Heat of formation + Delta-G solvation = -87.464651 kcal Electronic energy + Delta-G solvation = -15445.777123 eV Core-core repulsion = 12744.642381 eV Total energy + Delta-G solvation = -2701.134741 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78278 -38.30112 -37.81078 -36.16179 -34.18009 -31.29638 -29.96753 -28.23536 -26.62302 -23.85273 -22.93282 -21.03820 -19.36465 -18.52490 -18.28147 -17.93259 -17.05829 -16.70338 -16.00974 -15.65462 -15.21036 -14.88345 -14.72433 -14.10400 -13.78614 -13.34246 -13.13527 -12.86262 -12.68579 -12.54730 -12.31140 -11.92778 -11.82801 -11.45026 -11.20998 -11.02604 -10.89786 -10.04695 -9.21055 -8.65421 -8.46084 -6.30030 0.09454 0.20848 1.09528 1.28787 1.36992 1.48939 1.85008 1.93342 2.21250 2.57532 3.22502 3.36451 3.66875 3.95394 4.12431 4.29937 4.40333 4.55901 4.62780 4.81833 5.07093 5.18198 5.24383 5.27184 5.57437 5.61319 5.90786 5.95944 6.47594 6.78101 6.82438 6.90540 7.02202 8.36900 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.008376 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.338838 B = 3342.119182 C = 4565.602738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.469 4.469 8 H 0.079 0.921 9 C 0.056 3.944 10 C -0.394 4.394 11 S 0.074 5.926 12 C -0.183 4.183 13 C -0.087 4.087 14 C -0.076 4.076 15 C -0.100 4.100 16 C 0.129 3.871 17 O -0.589 6.589 18 C -0.117 4.117 19 C 0.119 3.881 20 O -0.497 6.497 21 H 0.284 0.716 22 H 0.137 0.863 23 H 0.122 0.878 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.399 0.601 27 H 0.161 0.839 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 -9.187 -3.700 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.097 0.903 9 C 0.047 3.953 10 C -0.530 4.530 11 S 0.337 5.663 12 C -0.299 4.299 13 C -0.097 4.097 14 C -0.096 4.096 15 C -0.103 4.103 16 C 0.052 3.948 17 O -0.399 6.399 18 C -0.138 4.138 19 C 0.068 3.932 20 O -0.309 6.309 21 H 0.095 0.905 22 H 0.154 0.846 23 H 0.140 0.860 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.250 0.750 27 H 0.179 0.821 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.289 -9.348 -2.244 10.972 hybrid contribution 1.186 1.668 -1.078 2.313 sum 6.475 -7.680 -3.322 10.580 Atomic orbital electron populations 1.69974 1.09015 1.30041 1.36692 1.26762 0.95581 1.04553 0.91863 0.85160 0.78570 0.75323 0.80096 1.18014 1.19484 1.18518 1.19252 0.97076 0.91272 1.42500 0.90253 1.17785 0.93388 0.91228 0.92941 1.24266 1.09104 0.98501 1.21127 1.81479 1.25287 0.98966 1.60559 1.23413 1.01859 0.97105 1.07477 1.19771 0.96440 0.93010 1.00432 1.20924 0.95097 0.96560 0.97024 1.19541 0.98691 0.91658 1.00447 1.20922 0.91799 1.01621 0.80427 1.86547 1.41799 1.94108 1.17410 1.21206 0.93904 1.00691 0.97955 1.17773 0.93189 0.83776 0.98431 1.84744 1.45827 1.53050 1.47311 0.90536 0.84599 0.85981 0.91564 0.89781 0.75007 0.82132 0.73830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.75 10.89 21.79 0.24 -45.51 15 2 C 0.03 1.35 5.31 85.16 0.45 1.81 15 3 Si 0.99 39.46 29.59 68.60 2.03 41.49 15 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 5 H -0.27 -10.30 7.11 99.48 0.71 -9.60 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.47 -26.00 9.06 23.25 0.21 -25.79 15 8 H 0.08 4.14 7.67 -2.91 -0.02 4.12 15 9 C 0.06 3.14 5.69 -20.87 -0.12 3.02 15 10 C -0.39 -22.22 9.52 67.40 0.64 -21.58 15 11 S 0.07 3.52 22.93 -56.49 -1.30 2.22 15 12 C -0.18 -8.46 6.39 23.00 0.15 -8.31 15 13 C -0.09 -4.32 6.02 -20.25 -0.12 -4.45 15 14 C -0.08 -3.21 9.50 22.68 0.22 -3.00 15 15 C -0.10 -3.37 5.49 -19.97 -0.11 -3.48 15 16 C 0.13 3.06 7.16 71.24 0.51 3.57 15 17 O -0.59 -14.26 13.64 -148.98 -2.03 -16.29 15 18 C -0.12 -3.81 9.61 22.33 0.21 -3.59 15 19 C 0.12 4.50 6.73 22.73 0.15 4.65 15 20 O -0.50 -15.86 13.47 -92.71 -1.25 -17.11 15 21 H 0.28 14.25 8.30 -92.71 -0.77 13.48 15 22 H 0.14 8.17 6.31 -2.91 -0.02 8.15 15 23 H 0.12 4.95 7.84 -2.91 -0.02 4.93 15 24 H 0.07 1.40 8.08 -2.39 -0.02 1.38 15 25 H 0.08 1.45 8.08 -2.39 -0.02 1.43 15 26 H 0.40 4.88 9.12 -74.06 -0.68 4.21 15 27 H 0.16 3.98 8.06 -2.91 -0.02 3.96 15 28 H 0.40 8.98 9.06 -74.06 -0.67 8.31 15 Total: -1.00 -70.21 264.84 -0.24 -70.45 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.12 Total: 21.89 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 2.19 Total: -57.15 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.24 Total: -45.51 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -3.28 Total: -33.40 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.30 Total: 2.22 kcal Total: -70.21 -0.24 -70.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396335996.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.018 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds