Wall clock time and date at job start Mon Mar 30 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86806 * 119.99766 * 2 1 4 4 H 1.48496 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46741 * 300.00227 * 3 2 1 6 6 H 1.48498 * 109.47113 * 60.00249 * 3 2 1 7 7 C 1.39832 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00363 * 197.83766 * 7 2 1 9 9 C 1.40994 * 119.99977 * 17.83074 * 7 2 1 10 10 C 1.40458 * 120.17140 * 25.15019 * 9 7 2 11 11 C 1.38919 * 120.07022 * 180.23291 * 10 9 7 12 12 S 1.76060 * 130.43326 * 179.23262 * 11 10 9 13 13 C 1.75473 * 91.53935 * 180.02562 * 12 11 10 14 14 C 1.32570 * 110.81423 * 359.97438 * 13 12 11 15 15 C 1.50702 * 122.05994 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47189 * 0.02965 * 15 14 13 17 17 C 1.40285 * 120.19495 * 359.49137 * 11 10 9 18 18 C 1.42437 * 118.97789 * 0.05343 * 17 11 10 19 19 O 1.35845 * 119.61543 * 180.18259 * 18 17 11 20 20 C 1.35719 * 120.76094 * 0.20355 * 18 17 11 21 21 H 0.96994 * 120.00349 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.96673 * 359.49098 * 10 9 7 23 23 H 1.08000 * 124.59693 * 179.97438 * 13 12 11 24 24 H 1.09001 * 109.47641 * 240.02393 * 15 14 13 25 25 H 1.09004 * 109.47243 * 120.02474 * 15 14 13 26 26 H 0.96703 * 114.00332 * 179.97438 * 16 15 14 27 27 H 0.96698 * 113.99489 * 90.00117 * 19 18 17 28 28 H 1.07996 * 119.82355 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8843 2.3965 1.2125 7 6 2.0084 -1.2109 -0.0005 8 1 3.0494 -1.2335 0.2859 9 6 1.3543 -2.4025 -0.3750 10 6 0.2346 -2.3571 -1.2217 11 6 -0.4112 -3.5321 -1.5854 12 16 -1.8265 -3.7901 -2.6004 13 6 -1.7346 -5.5271 -2.3686 14 6 -0.7114 -5.8447 -1.5878 15 6 -0.3975 -7.2725 -1.2217 16 8 -1.3491 -8.1424 -1.8378 17 6 0.0579 -4.7688 -1.1179 18 6 1.2005 -4.7969 -0.2679 19 8 1.6680 -5.9876 0.1893 20 6 1.8272 -3.6477 0.0908 21 1 -0.4850 0.8400 0.0004 22 1 -0.1321 -1.4068 -1.5808 23 1 -2.4189 -6.2408 -2.8031 24 1 -0.4462 -7.3891 -0.1390 25 1 0.6041 -7.5250 -1.5696 26 1 -1.2077 -9.0795 -1.6454 27 1 2.3281 -6.3979 -0.3859 28 1 2.6921 -3.6866 0.7363 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396336993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:18 Heat of formation + Delta-G solvation = -84.851082 kcal Electronic energy + Delta-G solvation = -15582.327244 eV Core-core repulsion = 12881.305835 eV Total energy + Delta-G solvation = -2701.021408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73928 -38.22699 -37.67411 -36.36319 -34.51764 -31.03778 -30.13973 -27.71193 -27.12270 -23.36209 -23.13480 -20.36331 -20.11971 -18.70747 -18.10525 -17.43140 -16.73962 -16.51487 -16.07417 -15.83415 -15.43347 -14.92908 -14.83257 -13.90388 -13.79360 -13.38097 -13.15950 -13.03419 -12.85580 -12.50165 -11.98184 -11.90903 -11.78315 -11.60073 -11.19859 -11.07860 -10.86093 -10.01331 -9.25439 -8.78807 -8.35949 -6.42833 0.11648 0.76201 0.93907 1.30671 1.36643 1.39682 1.55485 1.71420 2.15715 2.56050 3.37232 3.43119 3.57170 4.11738 4.33779 4.56660 4.61802 4.68097 4.82423 4.95210 5.12781 5.19510 5.27202 5.45362 5.79048 5.80855 5.91535 5.99155 6.41137 6.71260 6.72464 6.97031 7.04585 8.17254 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.006910 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.633459 B = 4051.139285 C = 4787.968643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.032 3.968 3 Si 0.990 3.010 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.094 0.906 9 C 0.109 3.891 10 C -0.191 4.191 11 C -0.087 4.087 12 S 0.008 5.992 13 C -0.235 4.235 14 C -0.063 4.063 15 C 0.152 3.848 16 O -0.586 6.586 17 C -0.236 4.236 18 C 0.170 3.830 19 O -0.501 6.501 20 C -0.235 4.235 21 H 0.294 0.706 22 H 0.106 0.894 23 H 0.171 0.829 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.401 0.599 27 H 0.401 0.599 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -7.596 -2.118 8.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.494 4.494 8 H 0.112 0.888 9 C 0.103 3.897 10 C -0.217 4.217 11 C -0.202 4.202 12 S 0.270 5.730 13 C -0.368 4.368 14 C -0.074 4.074 15 C 0.072 3.928 16 O -0.395 6.395 17 C -0.242 4.242 18 C 0.123 3.877 19 O -0.313 6.313 20 C -0.255 4.255 21 H 0.105 0.895 22 H 0.124 0.876 23 H 0.188 0.812 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.251 0.749 27 H 0.259 0.741 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.329 -5.947 -2.695 6.538 hybrid contribution 1.420 -0.556 0.659 1.661 sum 1.749 -6.503 -2.036 7.035 Atomic orbital electron populations 1.69922 1.09439 1.31341 1.32501 1.26953 0.95466 1.05168 0.90947 0.85037 0.79672 0.75375 0.79003 1.17300 1.19016 1.18907 1.19967 0.98925 0.91807 1.38743 0.88751 1.17628 0.90815 0.92952 0.88285 1.20533 1.01719 0.94526 1.04962 1.22477 0.98982 0.97142 1.01569 1.83565 1.30441 1.04091 1.54892 1.24611 1.05747 0.96287 1.10120 1.18655 0.95392 0.95387 0.97993 1.20497 0.91543 0.84557 0.96219 1.86387 1.55394 1.21964 1.75719 1.18017 1.03973 0.91771 1.10432 1.17729 0.91887 0.85118 0.92948 1.84664 1.61987 1.33425 1.51203 1.21032 1.04852 0.92220 1.07432 0.89516 0.87614 0.81168 0.91917 0.90733 0.74886 0.74143 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.08 10.98 21.81 0.24 -40.84 15 2 C 0.03 1.55 5.12 85.22 0.44 1.98 15 3 Si 0.99 35.69 29.60 68.60 2.03 37.72 15 4 H -0.25 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.47 -23.53 9.02 23.33 0.21 -23.32 15 8 H 0.09 4.43 7.91 -2.91 -0.02 4.41 15 9 C 0.11 5.72 5.56 -21.36 -0.12 5.60 15 10 C -0.19 -10.25 8.73 22.97 0.20 -10.05 15 11 C -0.09 -4.34 6.46 22.93 0.15 -4.19 15 12 S 0.01 0.36 23.29 -56.49 -1.32 -0.95 15 13 C -0.24 -9.36 10.32 66.67 0.69 -8.68 15 14 C -0.06 -2.52 5.82 -20.50 -0.12 -2.63 15 15 C 0.15 4.54 6.09 71.24 0.43 4.97 15 16 O -0.59 -15.35 12.45 -148.98 -1.85 -17.21 15 17 C -0.24 -10.82 5.88 -21.22 -0.12 -10.94 15 18 C 0.17 7.35 6.71 22.73 0.15 7.50 15 19 O -0.50 -16.86 11.50 -91.81 -1.06 -17.92 15 20 C -0.24 -11.06 9.59 22.39 0.21 -10.84 15 21 H 0.29 13.41 8.30 -92.71 -0.77 12.64 15 22 H 0.11 5.96 6.15 -2.91 -0.02 5.94 15 23 H 0.17 6.10 7.40 -2.91 -0.02 6.07 15 24 H 0.06 1.88 7.88 -2.39 -0.02 1.86 15 25 H 0.07 1.88 7.85 -2.39 -0.02 1.86 15 26 H 0.40 5.73 9.12 -74.05 -0.68 5.05 15 27 H 0.40 9.14 9.00 -74.06 -0.67 8.47 15 28 H 0.12 5.23 8.06 -2.91 -0.02 5.20 15 Total: -1.00 -63.34 260.09 0.05 -63.29 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.11 Total: 26.49 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 2.12 Total: -50.59 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.24 Total: -40.84 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -2.91 Total: -35.12 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.32 Total: -0.95 kcal Total: -63.34 0.05 -63.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396336993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.559 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds