Wall clock time and date at job start Mon Mar 30 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86794 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47193 * 269.99593 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99710 * 3 2 1 6 6 H 1.48504 * 109.47104 * 149.99582 * 3 2 1 7 7 C 1.39899 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00038 * 159.96177 * 7 2 1 9 9 C 1.40866 * 120.00152 * 339.95753 * 7 2 1 10 10 C 1.41750 * 120.23661 * 320.32581 * 9 7 2 11 11 O 1.35825 * 119.87406 * 0.02562 * 10 9 7 12 12 C 1.35749 * 120.24805 * 179.97438 * 10 9 7 13 13 C 1.41853 * 120.82476 * 0.02562 * 12 10 9 14 14 C 1.40522 * 128.58241 * 180.02562 * 13 12 10 15 15 C 1.32454 * 115.88478 * 179.97438 * 14 13 12 16 16 S 1.75467 * 110.86882 * 0.02562 * 15 14 13 17 17 C 1.40398 * 119.08384 * 359.97438 * 13 12 10 18 18 C 1.38812 * 120.26336 * 0.02562 * 17 13 12 19 19 C 1.50699 * 119.97603 * 180.02562 * 18 17 13 20 20 O 1.42894 * 109.47207 * 89.99594 * 19 18 17 21 21 H 0.96992 * 119.99891 * 0.02562 * 1 2 3 22 22 H 0.96703 * 113.99921 * 264.34862 * 11 10 9 23 23 H 1.07998 * 119.58751 * 179.97438 * 12 10 9 24 24 H 1.07998 * 122.05933 * 0.02562 * 14 13 12 25 25 H 1.08002 * 124.56277 * 180.26759 * 15 14 13 26 26 H 1.09000 * 109.47118 * 210.00041 * 19 18 17 27 27 H 1.09008 * 109.46576 * 329.99854 * 19 18 17 28 28 H 0.96704 * 113.99755 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0463 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5406 1.4401 0.7001 7 6 2.0086 -1.2116 0.0005 8 1 3.0395 -1.2401 -0.3199 9 6 1.3682 -2.3944 0.4192 10 6 0.4842 -2.3738 1.5270 11 8 0.2535 -1.2093 2.1869 12 6 -0.1334 -3.5134 1.9303 13 6 0.0926 -4.7405 1.2555 14 6 -0.4546 -6.0054 1.5301 15 6 -0.0671 -6.9887 0.7319 16 16 1.0586 -6.4033 -0.4801 17 6 0.9675 -4.7647 0.1578 18 6 1.6010 -3.6015 -0.2577 19 6 2.5384 -3.6347 -1.4371 20 8 1.8045 -3.3793 -2.6363 21 1 -0.4849 0.8400 -0.0004 22 1 0.8048 -1.0860 2.9717 23 1 -0.8045 -3.4856 2.7760 24 1 -1.1489 -6.1657 2.3416 25 1 -0.4023 -8.0122 0.8133 26 1 3.3069 -2.8718 -1.3120 27 1 3.0079 -4.6164 -1.5005 28 1 2.3459 -3.3851 -3.4375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396337461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:56 Heat of formation + Delta-G solvation = -74.335821 kcal Electronic energy + Delta-G solvation = -16002.272432 eV Core-core repulsion = 13301.707000 eV Total energy + Delta-G solvation = -2700.565432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51956 -38.01469 -37.64454 -35.70830 -34.44873 -31.64935 -30.37875 -27.22606 -26.41443 -23.94321 -22.20078 -21.17863 -19.46678 -18.32639 -18.08314 -17.66990 -17.38006 -16.51455 -15.76023 -15.30271 -15.14254 -14.57126 -14.45132 -14.15294 -13.88968 -13.45247 -12.99080 -12.94124 -12.88102 -12.54974 -12.10841 -11.98089 -11.49238 -11.37760 -10.87798 -10.76668 -10.64688 -10.18534 -8.97187 -8.65596 -8.35455 -6.30369 0.18235 0.70780 0.96275 1.36522 1.38767 1.43009 1.55616 1.77353 2.23768 2.73661 3.30512 3.75012 3.99992 4.22417 4.30796 4.46798 4.56888 4.66222 4.84048 4.98898 5.10900 5.23812 5.30616 5.45328 5.79666 5.85889 5.93115 6.05102 6.41940 6.70319 6.86800 7.10270 7.41207 8.37187 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.008750 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.685301 B = 3199.235874 C = 3935.721206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.055 3.945 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.477 4.477 8 H 0.085 0.915 9 C 0.108 3.892 10 C 0.055 3.945 11 O -0.481 6.481 12 C -0.104 4.104 13 C -0.203 4.203 14 C -0.093 4.093 15 C -0.244 4.244 16 S 0.031 5.969 17 C -0.086 4.086 18 C -0.212 4.212 19 C 0.152 3.848 20 O -0.583 6.583 21 H 0.287 0.713 22 H 0.372 0.628 23 H 0.123 0.877 24 H 0.151 0.849 25 H 0.187 0.813 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -4.724 1.608 6.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.165 4.165 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.505 4.505 8 H 0.103 0.897 9 C 0.102 3.898 10 C 0.010 3.990 11 O -0.288 6.288 12 C -0.125 4.125 13 C -0.209 4.209 14 C -0.123 4.123 15 C -0.376 4.376 16 S 0.292 5.708 17 C -0.201 4.201 18 C -0.220 4.220 19 C 0.076 3.924 20 O -0.390 6.390 21 H 0.097 0.903 22 H 0.225 0.775 23 H 0.141 0.859 24 H 0.169 0.831 25 H 0.205 0.795 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.037 -5.239 0.435 6.071 hybrid contribution 0.105 1.368 1.107 1.763 sum 3.142 -3.870 1.543 5.218 Atomic orbital electron populations 1.69830 1.09484 1.30736 1.30800 1.26524 0.94972 1.03782 0.91263 0.85293 0.79348 0.76403 0.79152 1.19352 1.19544 1.17650 1.19464 0.99052 0.92112 1.39854 0.89695 1.17951 0.89144 0.92515 0.90198 1.18231 1.01152 0.84805 0.94836 1.84962 1.63213 1.37412 1.43233 1.20814 1.00192 0.91104 1.00412 1.18071 1.06186 0.94999 1.01676 1.19966 1.00792 0.90553 1.00977 1.25086 1.07096 1.03841 1.01597 1.83440 1.50317 0.99853 1.37227 1.22517 1.01149 0.97022 0.99377 1.18956 1.09987 0.92289 1.00752 1.20522 0.91755 0.97631 0.82535 1.86662 1.40182 1.95107 1.17088 0.90275 0.77465 0.85926 0.83106 0.79537 0.93110 0.93977 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.67 11.31 21.82 0.25 -41.42 15 2 C 0.05 2.68 4.39 85.23 0.37 3.06 15 3 Si 0.98 37.12 29.60 68.60 2.03 39.15 15 4 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.48 -24.48 7.98 23.32 0.19 -24.29 15 8 H 0.09 4.16 6.70 -2.91 -0.02 4.14 15 9 C 0.11 5.69 5.34 -21.26 -0.11 5.57 15 10 C 0.06 2.78 6.11 22.56 0.14 2.92 15 11 O -0.48 -22.43 10.42 -91.59 -0.95 -23.39 15 12 C -0.10 -4.82 9.91 22.59 0.22 -4.59 15 13 C -0.20 -9.19 5.88 -21.30 -0.13 -9.31 15 14 C -0.09 -3.45 10.12 21.70 0.22 -3.23 15 15 C -0.24 -8.18 11.09 66.70 0.74 -7.44 15 16 S 0.03 1.19 22.57 -56.49 -1.28 -0.08 15 17 C -0.09 -4.03 6.29 22.93 0.14 -3.89 15 18 C -0.21 -10.58 5.59 -19.22 -0.11 -10.69 15 19 C 0.15 6.57 6.63 71.24 0.47 7.04 15 20 O -0.58 -25.11 13.64 -148.98 -2.03 -27.14 15 21 H 0.29 13.98 8.30 -92.71 -0.77 13.21 15 22 H 0.37 13.63 9.06 -74.06 -0.67 12.96 15 23 H 0.12 4.96 8.06 -2.91 -0.02 4.94 15 24 H 0.15 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.19 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.05 2.12 6.43 -2.39 -0.02 2.11 15 27 H 0.04 1.62 7.58 -2.38 -0.02 1.61 15 28 H 0.38 11.49 9.12 -74.05 -0.68 10.82 15 Total: -1.00 -65.84 259.57 0.05 -65.79 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.12 Total: 31.95 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 2.15 Total: -44.86 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.25 Total: -41.42 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -2.99 Total: -50.53 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.28 Total: -0.08 kcal Total: -65.84 0.05 -65.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396337461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.545 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds