Wall clock time and date at job start Mon Mar 30 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86800 * 119.99787 * 2 1 4 4 H 1.48496 * 109.47340 * 269.99671 * 3 2 1 5 5 H 1.48504 * 109.47249 * 29.99985 * 3 2 1 6 6 H 1.48500 * 109.47102 * 149.99757 * 3 2 1 7 7 C 1.39957 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00010 * 197.83744 * 7 2 1 9 9 C 1.40578 * 120.00349 * 17.84479 * 7 2 1 10 10 C 1.40250 * 120.36088 * 24.83373 * 9 7 2 11 11 C 1.38058 * 120.09560 * 179.78072 * 10 9 7 12 12 O 1.35918 * 119.52023 * 180.25741 * 11 10 9 13 13 C 1.38683 * 120.96237 * 0.50803 * 11 10 9 14 14 C 1.50702 * 119.30028 * 179.74537 * 13 11 10 15 15 O 1.42898 * 109.47139 * 269.73202 * 14 13 11 16 16 C 1.39539 * 121.39743 * 359.47431 * 13 11 10 17 17 S 1.76074 * 130.56491 * 180.23232 * 16 13 11 18 18 C 1.75507 * 91.51397 * 180.02562 * 17 16 13 19 19 C 1.32726 * 110.67881 * 359.97438 * 18 17 16 20 20 C 1.39787 * 120.11896 * 0.27127 * 16 13 11 21 21 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 22 22 H 1.07999 * 119.95737 * 0.02562 * 10 9 7 23 23 H 0.96701 * 113.99606 * 270.25034 * 12 11 10 24 24 H 1.09000 * 109.46873 * 149.73219 * 14 13 11 25 25 H 1.08999 * 109.47114 * 29.73306 * 14 13 11 26 26 H 0.96700 * 114.00011 * 180.02562 * 15 14 13 27 27 H 1.08000 * 124.65935 * 180.02562 * 18 17 16 28 28 H 1.08005 * 122.08979 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4403 0.7001 7 6 2.0083 -1.2121 0.0005 8 1 3.0494 -1.2344 0.2871 9 6 1.3562 -2.4004 -0.3720 10 6 0.2340 -2.3598 -1.2122 11 6 -0.3995 -3.5306 -1.5783 12 8 -1.4829 -3.4780 -2.3973 13 6 0.0504 -4.7592 -1.1183 14 6 -0.6729 -6.0132 -1.5369 15 8 -1.7040 -6.3064 -0.5920 16 6 1.1619 -4.8592 -0.2807 17 16 1.9352 -6.2714 0.4320 18 6 3.1351 -5.2694 1.2299 19 6 2.9327 -3.9869 0.9547 20 6 1.8456 -3.7070 0.1182 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1328 -1.4116 -1.5766 23 1 -2.3253 -3.3928 -1.9301 24 1 0.0321 -6.8437 -1.5748 25 1 -1.1144 -5.8662 -2.5226 26 1 -2.2119 -7.1029 -0.7985 27 1 3.9295 -5.6450 1.8578 28 1 3.5663 -3.2078 1.3523 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338095.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:01 Heat of formation + Delta-G solvation = -83.621472 kcal Electronic energy + Delta-G solvation = -15766.093757 eV Core-core repulsion = 13065.125669 eV Total energy + Delta-G solvation = -2700.968088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42660 -38.24130 -37.45730 -36.22987 -34.35992 -32.16006 -29.26641 -28.45835 -25.47660 -24.11206 -22.48638 -20.99893 -20.00718 -18.36342 -18.16362 -17.88336 -16.80548 -16.54463 -16.11532 -15.59247 -15.12354 -14.69556 -14.49061 -14.15620 -13.88521 -13.44004 -13.15539 -13.00585 -12.73535 -12.37371 -12.27759 -12.01309 -11.65839 -11.47134 -11.10337 -10.96230 -10.86844 -10.05505 -9.02127 -8.82647 -8.51278 -6.45389 0.10323 0.73509 0.92614 1.34850 1.37416 1.47102 1.52242 1.72238 2.12235 2.46258 3.37271 3.63582 3.87802 4.24093 4.27811 4.33238 4.59446 4.78185 4.80768 4.98335 5.07567 5.24300 5.33212 5.46334 5.80570 5.85953 5.89104 6.02373 6.34197 6.63142 6.68423 7.01204 7.07499 8.07362 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023116 B = 0.008851 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.993855 B = 3162.827094 C = 4213.814439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.251 1.251 7 C -0.449 4.449 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.252 4.252 11 C 0.170 3.830 12 O -0.509 6.509 13 C -0.254 4.254 14 C 0.150 3.850 15 O -0.586 6.586 16 C -0.071 4.071 17 S 0.053 5.947 18 C -0.257 4.257 19 C -0.084 4.084 20 C -0.222 4.222 21 H 0.299 0.701 22 H 0.114 0.886 23 H 0.397 0.603 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.388 0.612 27 H 0.186 0.814 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -4.381 -0.086 4.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.475 4.475 8 H 0.112 0.888 9 C 0.131 3.869 10 C -0.274 4.274 11 C 0.123 3.877 12 O -0.321 6.321 13 C -0.262 4.262 14 C 0.073 3.927 15 O -0.394 6.394 16 C -0.187 4.187 17 S 0.314 5.686 18 C -0.390 4.390 19 C -0.114 4.114 20 C -0.228 4.228 21 H 0.110 0.890 22 H 0.132 0.868 23 H 0.254 0.746 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.237 0.763 27 H 0.203 0.797 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.071 -5.318 -0.211 5.429 hybrid contribution -0.280 1.805 0.104 1.830 sum 0.791 -3.513 -0.107 3.602 Atomic orbital electron populations 1.69877 1.09446 1.31872 1.30202 1.27042 0.95586 1.05186 0.90832 0.85016 0.79202 0.74669 0.79876 1.18461 1.18767 1.17452 1.19949 0.98904 0.91646 1.37021 0.88800 1.18646 0.90126 0.90678 0.87493 1.21133 1.03704 0.96661 1.05905 1.17945 0.88467 0.91517 0.89738 1.84565 1.16437 1.96091 1.34976 1.18583 1.01876 0.94635 1.11146 1.20468 0.88376 0.92786 0.91031 1.86611 1.49970 1.50135 1.52671 1.22346 0.99329 0.96376 1.00604 1.83173 1.26537 1.08565 1.50294 1.25092 1.06723 0.95635 1.11534 1.19820 0.96917 0.96772 0.97852 1.19581 1.02143 0.93463 1.07635 0.89019 0.86795 0.74628 0.93823 0.92553 0.76278 0.79709 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.75 10.97 21.83 0.24 -38.51 15 2 C 0.03 1.56 5.13 85.25 0.44 2.00 15 3 Si 0.99 34.84 29.60 68.60 2.03 36.87 15 4 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 5 H -0.26 -8.73 7.11 99.48 0.71 -8.02 15 6 H -0.25 -8.48 7.11 99.48 0.71 -7.77 15 7 C -0.45 -22.76 8.82 23.26 0.21 -22.55 15 8 H 0.09 4.48 7.51 -2.91 -0.02 4.45 15 9 C 0.14 7.31 5.75 -19.66 -0.11 7.20 15 10 C -0.25 -13.47 8.58 22.72 0.19 -13.28 15 11 C 0.17 8.36 6.63 22.33 0.15 8.51 15 12 O -0.51 -21.53 12.40 -92.63 -1.15 -22.68 15 13 C -0.25 -12.01 5.56 -19.44 -0.11 -12.11 15 14 C 0.15 5.70 6.76 71.24 0.48 6.18 15 15 O -0.59 -20.63 13.64 -148.98 -2.03 -22.66 15 16 C -0.07 -3.41 6.29 22.96 0.14 -3.26 15 17 S 0.05 2.07 22.55 -56.49 -1.27 0.80 15 18 C -0.26 -9.56 11.11 66.65 0.74 -8.82 15 19 C -0.08 -3.65 9.75 21.52 0.21 -3.44 15 20 C -0.22 -11.18 6.02 -19.92 -0.12 -11.30 15 21 H 0.30 12.97 8.30 -92.71 -0.77 12.20 15 22 H 0.11 6.27 6.16 -2.91 -0.02 6.25 15 23 H 0.40 13.58 9.06 -74.06 -0.67 12.91 15 24 H 0.04 1.54 7.54 -2.39 -0.02 1.52 15 25 H 0.06 2.00 7.44 -2.39 -0.02 1.98 15 26 H 0.39 8.79 9.12 -74.06 -0.68 8.12 15 27 H 0.19 5.32 8.06 -2.91 -0.02 5.30 15 28 H 0.14 5.42 7.71 -2.91 -0.02 5.40 15 Total: -1.00 -62.88 261.77 -0.08 -62.96 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.12 Total: 34.09 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 2.22 Total: -50.88 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.24 Total: -38.51 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -3.18 Total: -45.34 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.27 Total: 0.80 kcal Total: -62.88 -0.08 -62.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338095.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.658 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds