Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30968 * 1 3 3 Si 1.86806 * 119.99598 * 2 1 4 4 H 1.48499 * 109.47062 * 275.40095 * 3 2 1 5 5 H 1.48492 * 109.47498 * 35.40080 * 3 2 1 6 6 H 1.48503 * 109.46799 * 155.40230 * 3 2 1 7 7 C 1.39815 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99810 * 341.78126 * 7 2 1 9 9 C 1.40826 * 120.00046 * 162.05299 * 7 2 1 10 10 C 1.41247 * 120.25771 * 329.42958 * 9 7 2 11 11 C 1.35098 * 120.44745 * 179.72457 * 10 9 7 12 12 C 1.50701 * 119.48514 * 180.30581 * 11 10 9 13 13 O 1.42906 * 109.46978 * 0.22305 * 12 11 10 14 14 C 1.42224 * 121.03622 * 0.53632 * 11 10 9 15 15 C 1.40503 * 128.54032 * 179.74742 * 14 11 10 16 16 C 1.32507 * 115.86542 * 179.97438 * 15 14 11 17 17 S 1.75485 * 110.77152 * 359.97438 * 16 15 14 18 18 C 1.39959 * 119.05293 * 359.74572 * 14 11 10 19 19 C 1.39595 * 120.14515 * 359.97438 * 18 14 11 20 20 O 1.35658 * 120.08801 * 179.97438 * 19 18 14 21 21 H 0.97004 * 119.99903 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.77214 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47772 * 120.22467 * 12 11 10 24 24 H 1.08996 * 109.47096 * 240.22992 * 12 11 10 25 25 H 0.96696 * 113.99949 * 179.97438 * 13 12 11 26 26 H 1.07996 * 122.07208 * 0.02562 * 15 14 11 27 27 H 1.08003 * 124.61044 * 180.02562 * 16 15 14 28 28 H 0.96702 * 113.99736 * 270.02304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6179 0.0000 4 1 2.3769 2.1124 -1.3939 5 1 1.5028 2.6171 0.8110 6 1 3.5936 1.4100 0.5828 7 6 2.0088 -1.2108 0.0005 8 1 1.5094 -2.1226 0.2934 9 6 3.3657 -1.2406 -0.3752 10 6 3.8637 -0.3139 -1.3177 11 6 5.1659 -0.3355 -1.6769 12 6 5.6756 0.6677 -2.6792 13 8 4.6036 1.5200 -3.0875 14 6 6.0623 -1.2933 -1.1274 15 6 7.4325 -1.4610 -1.3892 16 6 8.0309 -2.4429 -0.7307 17 16 6.8931 -3.2753 0.3143 18 6 5.5795 -2.2205 -0.1968 19 6 4.2362 -2.1990 0.1821 20 8 3.7693 -3.0986 1.0838 21 1 -0.4850 0.8401 0.0004 22 1 3.1998 0.4194 -1.7512 23 1 6.4637 1.2677 -2.2244 24 1 6.0737 0.1433 -3.5479 25 1 4.8598 2.1923 -3.7335 26 1 7.9653 -0.8284 -2.0836 27 1 9.0767 -2.6958 -0.8238 28 1 3.4401 -3.9173 0.6882 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396338410.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -58.563983 kcal Electronic energy + Delta-G solvation = -15927.217969 eV Core-core repulsion = 13227.336455 eV Total energy + Delta-G solvation = -2699.881514 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.05598 -36.76788 -35.97911 -34.62747 -33.01487 -30.21107 -29.17846 -25.60870 -24.60829 -22.70101 -20.33676 -19.96413 -17.97509 -17.22382 -16.96230 -15.64699 -15.51169 -14.65526 -14.63734 -14.35792 -13.74556 -13.44757 -13.15210 -12.71012 -12.29067 -11.97210 -11.75266 -11.48021 -11.01043 -10.89485 -10.49907 -10.19279 -10.11933 -9.89524 -9.75236 -9.44515 -9.07251 -8.44118 -7.56374 -7.20790 -6.82877 -4.59036 1.60651 2.31998 2.46795 2.88071 2.97345 3.12176 3.20259 3.32755 3.88291 4.24655 4.59029 4.99849 5.38932 5.51119 5.60953 5.72091 5.81595 5.97511 6.19896 6.43260 6.67737 6.73879 6.84043 7.04410 7.24457 7.42032 7.49885 7.73513 7.93637 8.06176 8.25929 8.48777 8.89475 9.78232 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.010468 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.863324 B = 2674.171512 C = 3687.250794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.081 3.919 3 Si 0.908 3.092 4 H -0.250 1.250 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.397 4.397 8 H 0.100 0.900 9 C 0.081 3.919 10 C -0.174 4.174 11 C -0.028 4.028 12 C 0.119 3.881 13 O -0.565 6.565 14 C -0.199 4.199 15 C -0.075 4.075 16 C -0.267 4.267 17 S 0.028 5.972 18 C -0.078 4.078 19 C -0.006 4.006 20 O -0.480 6.480 21 H 0.292 0.708 22 H 0.127 0.873 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.373 0.627 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.558 1.419 -4.493 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.175 1.175 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.424 4.424 8 H 0.118 0.882 9 C 0.074 3.926 10 C -0.193 4.193 11 C -0.030 4.030 12 C 0.041 3.959 13 O -0.369 6.369 14 C -0.204 4.204 15 C -0.105 4.105 16 C -0.400 4.400 17 S 0.288 5.712 18 C -0.193 4.193 19 C -0.059 4.059 20 O -0.287 6.287 21 H 0.102 0.898 22 H 0.144 0.856 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.219 0.781 26 H 0.138 0.862 27 H 0.165 0.835 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.323 0.358 -2.682 8.752 hybrid contribution 0.373 1.767 -1.693 2.475 sum 8.696 2.125 -4.375 9.964 Atomic orbital electron populations 1.69729 1.08220 1.31100 1.31496 1.26314 0.94888 1.02297 0.90653 0.86343 0.81140 0.79029 0.80204 1.17506 1.21456 1.16752 1.19418 0.92494 0.96508 1.34030 0.88245 1.17887 0.92888 0.91699 0.90095 1.20507 0.95181 1.02585 1.01038 1.18895 0.93426 0.94329 0.96378 1.20879 0.88409 0.90780 0.95821 1.86599 1.36896 1.48794 1.64607 1.17246 0.93265 1.03156 1.06766 1.19679 0.93283 0.97811 0.99745 1.24573 1.02468 1.05187 1.07778 1.83722 1.00480 1.38164 1.48850 1.22644 0.96913 0.99617 1.00148 1.17566 0.87907 0.99681 1.00726 1.84833 1.82543 1.28577 1.32730 0.89773 0.85586 0.92967 0.92879 0.78128 0.86215 0.83501 0.79376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.98 13.94 55.54 0.77 -19.21 15 2 C 0.08 2.06 5.40 -17.33 -0.09 1.97 15 3 Si 0.91 20.60 24.52 -169.99 -4.17 16.43 15 4 H -0.25 -5.50 6.71 56.52 0.38 -5.12 15 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.24 -5.88 6.87 56.52 0.39 -5.49 15 7 C -0.40 -10.51 9.16 -38.01 -0.35 -10.86 15 8 H 0.10 2.72 7.89 -52.48 -0.41 2.31 15 9 C 0.08 2.07 5.09 -106.75 -0.54 1.53 15 10 C -0.17 -4.19 6.39 -39.56 -0.25 -4.45 15 11 C -0.03 -0.61 5.90 -104.21 -0.62 -1.22 15 12 C 0.12 2.00 6.87 36.01 0.25 2.24 15 13 O -0.56 -9.45 12.04 -35.23 -0.42 -9.87 15 14 C -0.20 -4.31 5.85 -106.87 -0.62 -4.93 15 15 C -0.08 -1.38 9.69 -40.64 -0.39 -1.77 15 16 C -0.27 -4.67 11.10 28.82 0.32 -4.35 15 17 S 0.03 0.53 23.27 -107.50 -2.50 -1.97 15 18 C -0.08 -1.78 6.42 -38.43 -0.25 -2.03 15 19 C -0.01 -0.14 6.76 -38.05 -0.26 -0.40 15 20 O -0.48 -11.03 12.80 -18.68 -0.24 -11.26 15 21 H 0.29 6.68 8.30 -40.82 -0.34 6.34 15 22 H 0.13 3.05 3.60 -52.48 -0.19 2.86 15 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.37 3.91 9.12 45.56 0.42 4.33 15 26 H 0.12 1.81 7.89 -52.49 -0.41 1.40 15 27 H 0.15 2.09 8.06 -52.48 -0.42 1.67 15 28 H 0.35 6.62 9.06 45.56 0.41 7.03 15 LS Contribution 256.07 15.07 3.86 3.86 Total: -1.00 -29.93 256.07 -6.13 -36.07 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.63 Total: 10.22 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -2.81 Total: -24.26 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.77 Total: -19.21 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.66 Total: -21.13 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.43 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.50 Total: -1.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.93 -6.13 -36.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338410.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.495 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds