Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30968 * 1 3 3 Si 1.86806 * 119.99598 * 2 1 4 4 H 1.48499 * 109.47062 * 275.40095 * 3 2 1 5 5 H 1.48492 * 109.47498 * 35.40080 * 3 2 1 6 6 H 1.48503 * 109.46799 * 155.40230 * 3 2 1 7 7 C 1.39815 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99810 * 341.78126 * 7 2 1 9 9 C 1.40826 * 120.00046 * 162.05299 * 7 2 1 10 10 C 1.41247 * 120.25771 * 329.42958 * 9 7 2 11 11 C 1.35098 * 120.44745 * 179.72457 * 10 9 7 12 12 C 1.50701 * 119.48514 * 180.30581 * 11 10 9 13 13 O 1.42906 * 109.46978 * 0.22305 * 12 11 10 14 14 C 1.42224 * 121.03622 * 0.53632 * 11 10 9 15 15 C 1.40503 * 128.54032 * 179.74742 * 14 11 10 16 16 C 1.32507 * 115.86542 * 179.97438 * 15 14 11 17 17 S 1.75485 * 110.77152 * 359.97438 * 16 15 14 18 18 C 1.39959 * 119.05293 * 359.74572 * 14 11 10 19 19 C 1.39595 * 120.14515 * 359.97438 * 18 14 11 20 20 O 1.35658 * 120.08801 * 179.97438 * 19 18 14 21 21 H 0.97004 * 119.99903 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.77214 * 359.97438 * 10 9 7 23 23 H 1.08997 * 109.47772 * 120.22467 * 12 11 10 24 24 H 1.08996 * 109.47096 * 240.22992 * 12 11 10 25 25 H 0.96696 * 113.99949 * 179.97438 * 13 12 11 26 26 H 1.07996 * 122.07208 * 0.02562 * 15 14 11 27 27 H 1.08003 * 124.61044 * 180.02562 * 16 15 14 28 28 H 0.96702 * 113.99736 * 270.02304 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2436 1.6179 0.0000 4 1 2.3769 2.1124 -1.3939 5 1 1.5028 2.6171 0.8110 6 1 3.5936 1.4100 0.5828 7 6 2.0088 -1.2108 0.0005 8 1 1.5094 -2.1226 0.2934 9 6 3.3657 -1.2406 -0.3752 10 6 3.8637 -0.3139 -1.3177 11 6 5.1659 -0.3355 -1.6769 12 6 5.6756 0.6677 -2.6792 13 8 4.6036 1.5200 -3.0875 14 6 6.0623 -1.2933 -1.1274 15 6 7.4325 -1.4610 -1.3892 16 6 8.0309 -2.4429 -0.7307 17 16 6.8931 -3.2753 0.3143 18 6 5.5795 -2.2205 -0.1968 19 6 4.2362 -2.1990 0.1821 20 8 3.7693 -3.0986 1.0838 21 1 -0.4850 0.8401 0.0004 22 1 3.1998 0.4194 -1.7512 23 1 6.4637 1.2677 -2.2244 24 1 6.0737 0.1433 -3.5479 25 1 4.8598 2.1923 -3.7335 26 1 7.9653 -0.8284 -2.0836 27 1 9.0767 -2.6958 -0.8238 28 1 3.4401 -3.9173 0.6882 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338410.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = -82.348123 kcal Electronic energy + Delta-G solvation = -15928.249327 eV Core-core repulsion = 13227.336455 eV Total energy + Delta-G solvation = -2700.912872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74574 -38.32551 -37.44143 -36.38654 -34.73309 -31.86164 -30.86174 -27.28815 -26.17212 -24.39808 -21.98695 -21.60186 -19.70566 -18.95949 -18.32736 -17.30999 -17.22414 -16.30507 -16.17322 -15.83505 -15.28784 -15.10383 -14.84397 -14.43352 -13.89913 -13.61105 -13.39773 -13.08233 -12.70639 -12.65899 -12.12085 -11.79723 -11.65143 -11.56852 -11.43298 -11.05000 -10.81669 -10.04220 -9.29185 -9.04946 -8.45756 -6.50162 -0.01459 0.52494 0.84028 1.24828 1.28558 1.34399 1.41141 1.62044 2.07638 2.48934 3.18435 3.43231 3.70150 4.02868 4.25427 4.40575 4.50227 4.61582 4.62538 4.74585 5.02067 5.09831 5.20581 5.31640 5.60107 5.69465 5.82360 5.97555 6.13192 6.45262 6.60554 7.01814 7.15151 8.01618 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.010468 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.863324 B = 2674.171512 C = 3687.250794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.052 3.948 3 Si 0.960 3.040 4 H -0.238 1.238 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.447 4.447 8 H 0.066 0.934 9 C 0.063 3.937 10 C -0.193 4.193 11 C -0.037 4.037 12 C 0.122 3.878 13 O -0.590 6.590 14 C -0.185 4.185 15 C -0.091 4.091 16 C -0.233 4.233 17 S 0.044 5.956 18 C -0.117 4.117 19 C -0.024 4.024 20 O -0.493 6.493 21 H 0.299 0.701 22 H 0.121 0.879 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.400 0.600 26 H 0.165 0.835 27 H 0.193 0.807 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 2.193 -6.007 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.166 4.166 3 Si 0.783 3.217 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.057 3.943 10 C -0.213 4.213 11 C -0.039 4.039 12 C 0.045 3.955 13 O -0.399 6.399 14 C -0.192 4.192 15 C -0.121 4.121 16 C -0.366 4.366 17 S 0.304 5.696 18 C -0.233 4.233 19 C -0.077 4.077 20 O -0.301 6.301 21 H 0.110 0.890 22 H 0.138 0.862 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.250 0.750 26 H 0.182 0.818 27 H 0.210 0.790 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.669 1.131 -4.211 13.399 hybrid contribution -0.509 1.293 -1.261 1.877 sum 12.160 2.424 -5.473 13.554 Atomic orbital electron populations 1.69741 1.08921 1.32021 1.34434 1.26814 0.95421 1.04085 0.90264 0.85586 0.78823 0.76677 0.80635 1.16230 1.19933 1.19253 1.19262 0.93731 0.96109 1.38474 0.91581 1.18098 0.92735 0.92860 0.90617 1.20544 0.96601 1.02759 1.01373 1.19506 0.92544 0.95132 0.96725 1.20944 0.88476 0.90390 0.95726 1.86534 1.37663 1.49846 1.65867 1.17853 0.95058 1.01500 1.04798 1.19982 0.91593 0.99187 1.01289 1.25239 1.03919 1.02912 1.04563 1.83752 0.99500 1.37335 1.48963 1.23008 0.97363 1.01513 1.01407 1.17818 0.89000 0.99940 1.00903 1.84745 1.82771 1.29338 1.33271 0.88976 0.86178 0.90218 0.89791 0.74959 0.81787 0.78986 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.85 13.94 21.81 0.30 -44.54 15 2 C 0.05 2.80 5.40 85.20 0.46 3.26 15 3 Si 0.96 43.96 24.52 68.60 1.68 45.64 15 4 H -0.24 -10.26 6.71 99.48 0.67 -9.59 15 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 6 H -0.27 -13.09 6.87 99.48 0.68 -12.41 15 7 C -0.45 -25.55 9.16 23.29 0.21 -25.33 15 8 H 0.07 4.02 7.89 -2.91 -0.02 3.99 15 9 C 0.06 3.36 5.09 -21.24 -0.11 3.25 15 10 C -0.19 -9.39 6.39 22.29 0.14 -9.24 15 11 C -0.04 -1.52 5.90 -19.60 -0.12 -1.63 15 12 C 0.12 3.56 6.87 71.24 0.49 4.05 15 13 O -0.59 -17.86 12.04 -148.98 -1.79 -19.66 15 14 C -0.19 -7.45 5.85 -21.32 -0.12 -7.57 15 15 C -0.09 -2.79 9.69 21.68 0.21 -2.58 15 16 C -0.23 -6.70 11.10 66.68 0.74 -5.96 15 17 S 0.04 1.55 23.27 -56.49 -1.31 0.24 15 18 C -0.12 -5.23 6.42 23.01 0.15 -5.08 15 19 C -0.02 -1.23 6.76 23.26 0.16 -1.07 15 20 O -0.49 -23.69 12.80 -89.74 -1.15 -24.83 15 21 H 0.30 14.47 8.30 -92.71 -0.77 13.70 15 22 H 0.12 5.89 3.60 -2.91 -0.01 5.88 15 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.40 6.84 9.12 -74.06 -0.68 6.16 15 26 H 0.16 3.65 7.89 -2.91 -0.02 3.62 15 27 H 0.19 3.88 8.06 -2.91 -0.02 3.86 15 28 H 0.37 14.69 9.06 -74.06 -0.67 14.02 15 Total: -1.00 -68.61 256.07 -0.24 -68.85 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -0.18 Total: 22.22 kcal Atomic # 6 Polarization: -50.13 SS G_CDS: 2.21 Total: -47.92 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.30 Total: -44.54 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -2.94 Total: -44.49 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.31 Total: 0.24 kcal Total: -68.61 -0.24 -68.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338410.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.499 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds