Wall clock time and date at job start Mon Mar 30 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47126 * 239.99683 * 3 2 1 5 5 H 1.48496 * 109.47110 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46901 * 119.99530 * 3 2 1 7 7 C 1.39827 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 162.55907 * 7 2 1 9 9 C 1.41264 * 120.00451 * 342.55221 * 7 2 1 10 10 C 1.39976 * 120.02978 * 334.28708 * 9 7 2 11 11 C 1.40599 * 120.07704 * 180.29887 * 10 9 7 12 12 C 1.45579 * 129.14906 * 179.97438 * 11 10 9 13 13 C 1.31729 * 114.88197 * 180.02562 * 12 11 10 14 14 C 1.50696 * 124.24918 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.47077 * 90.00052 * 14 13 12 16 16 S 1.75266 * 111.49253 * 359.97438 * 13 12 11 17 17 C 1.40042 * 119.06024 * 359.97182 * 11 10 9 18 18 C 1.40902 * 120.14508 * 0.02562 * 17 11 10 19 19 O 1.35919 * 119.63648 * 180.02562 * 18 17 11 20 20 C 1.36139 * 120.73000 * 0.02562 * 18 17 11 21 21 H 0.96998 * 119.99646 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.96056 * 0.26939 * 10 9 7 23 23 H 1.07992 * 122.55950 * 0.02562 * 12 11 10 24 24 H 1.09003 * 109.46936 * 209.99376 * 14 13 12 25 25 H 1.08991 * 109.47235 * 329.99495 * 14 13 12 26 26 H 0.96699 * 114.00165 * 179.97438 * 15 14 13 27 27 H 0.96698 * 113.99824 * 270.02147 * 19 18 17 28 28 H 1.08001 * 119.97257 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0968 1.6964 1.2126 7 6 2.0082 -1.2110 0.0005 8 1 3.0510 -1.2326 -0.2798 9 6 1.3507 -2.4061 0.3679 10 6 0.2373 -2.3611 1.2150 11 6 -0.4141 -3.5506 1.5863 12 6 -1.5744 -3.7331 2.4464 13 6 -1.9543 -4.9842 2.6064 14 6 -3.1263 -5.4133 3.4509 15 8 -4.3079 -5.4395 2.6477 16 16 -0.9253 -6.0870 1.7137 17 6 0.0672 -4.7711 1.0965 18 6 1.1891 -4.7987 0.2446 19 8 1.6472 -5.9891 -0.2252 20 6 1.8195 -3.6463 -0.1132 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1215 -1.4118 1.5843 23 1 -2.0847 -2.9060 2.9172 24 1 -2.9388 -6.4086 3.8538 25 1 -3.2602 -4.7085 4.2714 26 1 -5.1036 -5.7081 3.1271 27 1 2.3108 -6.4063 0.3411 28 1 2.6787 -3.6818 -0.7666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338563.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:17 Heat of formation + Delta-G solvation = -84.331148 kcal Electronic energy + Delta-G solvation = -15305.404789 eV Core-core repulsion = 12604.405927 eV Total energy + Delta-G solvation = -2700.998862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36344 -38.48969 -37.66568 -36.38563 -34.45055 -31.41208 -30.19211 -27.69611 -26.72270 -23.58997 -22.56828 -21.24622 -19.73392 -18.44743 -18.31397 -17.71435 -17.05565 -16.45534 -16.35493 -15.69624 -15.12614 -14.96661 -14.66050 -14.07124 -13.85590 -13.45348 -13.29998 -12.82461 -12.69680 -12.47939 -12.12334 -12.02758 -11.73824 -11.58576 -11.26546 -10.97638 -10.92911 -10.03115 -9.28549 -8.70826 -8.42145 -6.39053 0.01805 0.66951 0.85780 1.30187 1.37914 1.40390 1.51960 1.60107 2.19038 2.58535 3.41388 3.45529 3.54727 3.99880 4.22994 4.34348 4.47365 4.52640 4.80040 4.88600 5.05480 5.18990 5.27029 5.44064 5.47456 5.76261 5.90667 6.05417 6.48643 6.75442 6.80553 6.93204 6.98063 8.26724 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.006889 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.807258 B = 4063.719282 C = 4986.922696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.086 0.914 9 C 0.093 3.907 10 C -0.174 4.174 11 C -0.057 4.057 12 C -0.116 4.116 13 C -0.171 4.171 14 C 0.153 3.847 15 O -0.588 6.588 16 S 0.062 5.938 17 C -0.278 4.278 18 C 0.151 3.849 19 O -0.507 6.507 20 C -0.221 4.221 21 H 0.291 0.709 22 H 0.111 0.889 23 H 0.146 0.854 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.403 0.597 27 H 0.399 0.601 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -5.573 7.519 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.104 0.896 9 C 0.089 3.911 10 C -0.196 4.196 11 C -0.063 4.063 12 C -0.147 4.147 13 C -0.286 4.286 14 C 0.074 3.926 15 O -0.398 6.398 16 S 0.323 5.677 17 C -0.393 4.393 18 C 0.103 3.897 19 O -0.319 6.319 20 C -0.242 4.242 21 H 0.102 0.898 22 H 0.129 0.871 23 H 0.163 0.837 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.254 0.746 27 H 0.256 0.744 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.217 -6.709 6.442 9.842 hybrid contribution 0.310 2.016 0.583 2.121 sum -2.907 -4.693 7.025 8.935 Atomic orbital electron populations 1.69910 1.09202 1.31051 1.34382 1.26827 0.95469 1.04772 0.90983 0.85166 0.78699 0.75117 0.80258 1.18207 1.19259 1.18152 1.19809 0.98576 0.91915 1.41380 0.89559 1.17578 0.91688 0.92656 0.89188 1.21142 1.00478 0.95149 1.02827 1.19364 0.95851 0.93176 0.97902 1.21063 0.96385 0.97319 0.99975 1.23931 1.02660 0.96382 1.05671 1.20531 0.80774 1.01417 0.89915 1.86561 1.19199 1.92315 1.41720 1.83072 1.26205 1.08387 1.50055 1.22681 1.06750 0.97059 1.12827 1.17239 0.92745 0.85240 0.94497 1.84717 1.62087 1.33606 1.51498 1.21113 1.04452 0.92153 1.06466 0.89784 0.87097 0.83662 0.90359 0.89412 0.74594 0.74416 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.59 10.99 21.81 0.24 -42.35 15 2 C 0.04 1.75 5.12 85.21 0.44 2.19 15 3 Si 0.99 36.97 29.59 68.60 2.03 39.00 15 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 6 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 7 C -0.49 -25.68 9.03 23.40 0.21 -25.47 15 8 H 0.09 4.28 7.90 -2.91 -0.02 4.26 15 9 C 0.09 5.03 5.55 -21.43 -0.12 4.91 15 10 C -0.17 -9.35 8.75 23.27 0.20 -9.15 15 11 C -0.06 -2.81 6.03 -20.37 -0.12 -2.94 15 12 C -0.12 -4.80 10.21 23.45 0.24 -4.56 15 13 C -0.17 -6.21 6.00 24.97 0.15 -6.06 15 14 C 0.15 3.83 7.47 71.23 0.53 4.36 15 15 O -0.59 -15.17 13.64 -148.98 -2.03 -17.20 15 16 S 0.06 2.41 23.17 -56.49 -1.31 1.10 15 17 C -0.28 -13.20 6.46 23.36 0.15 -13.05 15 18 C 0.15 7.10 6.67 22.43 0.15 7.25 15 19 O -0.51 -20.08 13.45 -92.63 -1.25 -21.32 15 20 C -0.22 -11.03 9.62 22.47 0.22 -10.81 15 21 H 0.29 13.65 8.30 -92.71 -0.77 12.88 15 22 H 0.11 6.15 6.17 -2.91 -0.02 6.13 15 23 H 0.15 5.42 8.06 -2.91 -0.02 5.39 15 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.40 5.23 9.12 -74.06 -0.68 4.55 15 27 H 0.40 11.36 9.06 -74.06 -0.67 10.69 15 28 H 0.12 5.52 8.06 -2.91 -0.02 5.49 15 Total: -1.00 -67.12 266.03 -0.39 -67.52 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.12 Total: 26.59 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 2.05 Total: -53.34 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.24 Total: -42.35 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -3.28 Total: -38.53 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -67.12 -0.39 -67.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338563.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.816 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds