Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30961 * 1 3 3 Si 1.86804 * 119.99889 * 2 1 4 4 H 1.48493 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47038 * 300.00421 * 3 2 1 6 6 H 1.48505 * 109.46698 * 60.00627 * 3 2 1 7 7 C 1.39818 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00493 * 197.84904 * 7 2 1 9 9 C 1.40830 * 120.00050 * 17.84162 * 7 2 1 10 10 C 1.41250 * 120.25748 * 24.88860 * 9 7 2 11 11 C 1.35102 * 120.45073 * 179.97438 * 10 9 7 12 12 C 1.42221 * 121.03328 * 359.97438 * 11 10 9 13 13 C 1.40503 * 128.53811 * 179.69894 * 12 11 10 14 14 C 1.32509 * 115.86703 * 179.86771 * 13 12 11 15 15 C 1.50698 * 124.61275 * 180.17951 * 14 13 12 16 16 O 1.42901 * 109.47110 * 90.24024 * 15 14 13 17 17 S 1.75482 * 110.76952 * 0.40953 * 14 13 12 18 18 C 1.39952 * 119.05854 * 0.02562 * 12 11 10 19 19 C 1.39607 * 120.14213 * 359.97438 * 18 12 11 20 20 O 1.35654 * 120.08274 * 179.97438 * 19 18 12 21 21 H 0.96996 * 120.00328 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.76927 * 359.95593 * 10 9 7 23 23 H 1.07998 * 119.47660 * 180.02562 * 11 10 9 24 24 H 1.08005 * 122.06973 * 0.02562 * 13 12 11 25 25 H 1.08996 * 109.46871 * 210.23713 * 15 14 13 26 26 H 1.09005 * 109.47261 * 330.23781 * 15 14 13 27 27 H 0.96699 * 113.99858 * 180.02562 * 16 15 14 28 28 H 0.96699 * 113.99757 * 270.02052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 3.7035 1.3465 0.0006 5 1 1.8847 2.3965 -1.2124 6 1 1.8849 2.3964 1.2126 7 6 2.0088 -1.2108 -0.0005 8 1 3.0498 -1.2335 0.2861 9 6 1.3555 -2.4010 -0.3747 10 6 0.2261 -2.3569 -1.2219 11 6 -0.4032 -3.4963 -1.5838 12 6 0.0521 -4.7630 -1.1246 13 6 -0.4803 -6.0350 -1.3944 14 6 0.1502 -7.0565 -0.8331 15 6 -0.2486 -8.5009 -0.9931 16 8 0.4281 -9.0599 -2.1207 17 16 1.5087 -6.4978 0.1269 18 6 1.1701 -4.8199 -0.2847 19 6 1.8242 -3.6456 0.0923 20 8 2.9075 -3.7020 0.9068 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1369 -1.4058 -1.5826 23 1 -1.2651 -3.4443 -2.2325 24 1 -1.3481 -6.1720 -2.0225 25 1 0.0239 -9.0546 -0.0947 26 1 -1.3258 -8.5656 -1.1470 27 1 0.2182 -9.9895 -2.2843 28 1 2.6943 -3.6517 1.8487 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396338595.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = -84.700684 kcal Electronic energy + Delta-G solvation = -15345.699327 eV Core-core repulsion = 12644.684440 eV Total energy + Delta-G solvation = -2701.014887 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35709 -38.37421 -37.38632 -36.48664 -34.49063 -31.26679 -30.55712 -28.29202 -25.66425 -24.01911 -22.41250 -21.05680 -19.65629 -18.74821 -18.35743 -17.43932 -17.16245 -16.38914 -16.24966 -15.46000 -15.18057 -14.89950 -14.49584 -14.15762 -13.92543 -13.44127 -13.30559 -12.97002 -12.72170 -12.46737 -12.16578 -11.89702 -11.64086 -11.51739 -11.05388 -11.00406 -10.90972 -10.14102 -9.21526 -8.89631 -8.39398 -6.42300 0.05618 0.76697 0.88552 1.25892 1.33188 1.38287 1.53597 1.69812 2.14893 2.58819 3.38559 3.61924 3.85822 4.12514 4.30706 4.38484 4.55444 4.62037 4.78000 4.94769 5.02571 5.19380 5.26180 5.38122 5.78260 5.81482 5.91765 6.04699 6.37475 6.64374 6.68260 6.97668 7.23813 8.09914 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.005907 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.189263 B = 4739.159445 C = 5176.082259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.209 4.209 13 C -0.067 4.067 14 C -0.238 4.238 15 C 0.162 3.838 16 O -0.590 6.590 17 S 0.042 5.958 18 C -0.110 4.110 19 C -0.052 4.052 20 O -0.494 6.494 21 H 0.299 0.701 22 H 0.122 0.878 23 H 0.126 0.874 24 H 0.150 0.850 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.399 0.601 28 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -7.187 -0.419 7.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.080 3.920 10 C -0.172 4.172 11 C -0.095 4.095 12 C -0.215 4.215 13 C -0.097 4.097 14 C -0.353 4.353 15 C 0.083 3.917 16 O -0.400 6.400 17 S 0.304 5.696 18 C -0.226 4.226 19 C -0.105 4.105 20 O -0.302 6.302 21 H 0.110 0.890 22 H 0.140 0.860 23 H 0.144 0.856 24 H 0.168 0.832 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.250 0.750 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.791 -7.306 -0.120 7.523 hybrid contribution -1.136 1.034 -0.166 1.545 sum -2.927 -6.272 -0.286 6.927 Atomic orbital electron populations 1.69875 1.08986 1.31777 1.31560 1.26907 0.95601 1.04788 0.90802 0.85031 0.79211 0.75317 0.79507 1.18506 1.18195 1.18432 1.19798 0.98553 0.91709 1.37921 0.89955 1.18125 0.91585 0.91956 0.90379 1.20894 0.98587 0.97838 0.99849 1.20678 0.99140 0.90509 0.99128 1.18072 0.99975 0.94742 1.08756 1.19920 1.00646 0.90039 0.99115 1.23747 1.02704 0.99387 1.09418 1.20345 0.96232 0.86175 0.88911 1.86572 1.71661 1.32058 1.49662 1.83447 1.33860 0.97320 1.54938 1.22983 0.99557 0.96377 1.03652 1.17699 0.96837 0.90397 1.05518 1.84719 1.30247 1.95760 1.19445 0.88974 0.85986 0.85576 0.83204 0.91614 0.89599 0.75019 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.07 10.97 21.81 0.24 -37.83 15 2 C 0.04 1.77 5.13 85.21 0.44 2.21 15 3 Si 0.99 35.51 29.60 68.60 2.03 37.54 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 5 H -0.26 -8.76 7.11 99.48 0.71 -8.06 15 6 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 7 C -0.45 -23.58 8.69 23.29 0.20 -23.37 15 8 H 0.08 4.31 7.63 -2.91 -0.02 4.29 15 9 C 0.09 4.62 5.57 -21.24 -0.12 4.50 15 10 C -0.15 -7.73 8.58 22.29 0.19 -7.54 15 11 C -0.07 -3.43 9.99 22.54 0.23 -3.21 15 12 C -0.21 -9.74 5.88 -21.32 -0.13 -9.86 15 13 C -0.07 -2.63 9.97 21.68 0.22 -2.41 15 14 C -0.24 -8.72 6.06 24.55 0.15 -8.57 15 15 C 0.16 4.22 7.50 71.24 0.53 4.75 15 16 O -0.59 -15.46 13.64 -148.98 -2.03 -17.49 15 17 S 0.04 1.75 23.24 -56.49 -1.31 0.44 15 18 C -0.11 -5.42 6.42 23.02 0.15 -5.27 15 19 C -0.05 -2.72 6.76 23.27 0.16 -2.56 15 20 O -0.49 -24.01 12.74 -89.70 -1.14 -25.16 15 21 H 0.30 12.56 8.30 -92.71 -0.77 11.79 15 22 H 0.12 6.19 6.16 -2.91 -0.02 6.17 15 23 H 0.13 4.93 8.06 -2.91 -0.02 4.91 15 24 H 0.15 4.85 8.06 -2.91 -0.02 4.83 15 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 26 H 0.09 1.74 8.14 -2.38 -0.02 1.73 15 27 H 0.40 5.41 9.12 -74.06 -0.68 4.74 15 28 H 0.37 14.93 9.06 -74.06 -0.67 14.26 15 Total: -1.00 -64.30 264.72 -0.32 -64.62 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.12 Total: 29.21 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 2.02 Total: -51.34 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.24 Total: -37.83 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -3.18 Total: -42.65 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.31 Total: 0.44 kcal Total: -64.30 -0.32 -64.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396338595.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.077 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds