Wall clock time and date at job start Mon Mar 30 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48507 * 109.47090 * 239.99726 * 3 2 1 5 5 H 1.48503 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47536 * 119.99373 * 3 2 1 7 7 C 1.39918 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00345 * 197.82586 * 7 2 1 9 9 C 1.40533 * 119.99541 * 17.83310 * 7 2 1 10 10 C 1.40397 * 120.41861 * 24.76774 * 9 7 2 11 11 C 1.37490 * 120.12173 * 180.02562 * 10 9 7 12 12 C 1.38332 * 121.10944 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.25764 * 179.97438 * 12 11 10 14 14 O 1.42908 * 109.46755 * 359.97438 * 13 12 11 15 15 C 1.39319 * 121.48673 * 359.95474 * 12 11 10 16 16 S 1.76070 * 130.52696 * 180.02562 * 15 12 11 17 17 C 1.75498 * 91.55585 * 180.02562 * 16 15 12 18 18 O 1.35549 * 124.70380 * 180.02562 * 17 16 15 19 19 C 1.33672 * 110.58866 * 359.97438 * 17 16 15 20 20 C 1.39746 * 115.65910 * 0.02562 * 19 17 16 21 21 H 0.97005 * 119.99730 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.94328 * 0.04276 * 10 9 7 23 23 H 1.08004 * 119.44727 * 179.97438 * 11 10 9 24 24 H 1.08994 * 109.47430 * 119.99401 * 13 12 11 25 25 H 1.09006 * 109.47095 * 240.00164 * 13 12 11 26 26 H 0.96703 * 113.99810 * 179.97438 * 14 13 12 27 27 H 0.96703 * 113.99756 * 269.99400 * 18 17 16 28 28 H 1.07992 * 122.17069 * 180.26712 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6966 1.2125 7 6 2.0086 -1.2117 0.0005 8 1 3.0496 -1.2341 0.2869 9 6 1.3565 -2.3996 -0.3717 10 6 0.2320 -2.3602 -1.2114 11 6 -0.4016 -3.5262 -1.5713 12 6 0.0488 -4.7534 -1.1188 13 6 -0.6777 -6.0051 -1.5389 14 8 -1.7744 -5.6575 -2.3867 15 6 1.1591 -4.8583 -0.2839 16 16 1.9290 -6.2751 0.4234 17 6 3.1330 -5.2804 1.2240 18 8 4.1294 -5.7572 2.0096 19 6 2.9318 -3.9875 0.9506 20 6 1.8460 -3.7071 0.1167 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1359 -1.4124 -1.5756 23 1 -1.2659 -3.4832 -2.2174 24 1 0.0069 -6.6585 -2.0795 25 1 -1.0518 -6.5220 -0.6551 26 1 -2.2880 -6.4161 -2.6963 27 1 3.8931 -5.8285 2.9446 28 1 3.5694 -3.2103 1.3453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396339070.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:58 Heat of formation + Delta-G solvation = -81.133206 kcal Electronic energy + Delta-G solvation = -15491.464058 eV Core-core repulsion = 12790.603869 eV Total energy + Delta-G solvation = -2700.860189 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11311 -38.79141 -37.59092 -35.99126 -34.65617 -32.15808 -29.54799 -28.11971 -25.46926 -24.18851 -22.41018 -21.14794 -19.93379 -18.85694 -18.07272 -17.36263 -16.86538 -16.43528 -16.16844 -15.77552 -15.73093 -14.78151 -14.66016 -13.93232 -13.63698 -13.56024 -13.37057 -13.03717 -12.91321 -12.53881 -12.13312 -11.61881 -11.53151 -11.41103 -11.30499 -11.09842 -10.87872 -9.94958 -9.03165 -8.83239 -8.54726 -6.37106 0.00505 0.70661 0.81156 1.18197 1.37273 1.48244 1.52045 1.69223 2.13089 2.54877 3.42838 3.52423 3.55415 4.26371 4.45792 4.56589 4.63619 4.65583 4.71190 4.98757 5.09084 5.20666 5.37028 5.46491 5.77740 5.90949 6.00919 6.11405 6.49380 6.67388 6.69709 6.81271 7.04521 8.09311 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.008960 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.324374 B = 3124.183177 C = 4521.139274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.125 3.875 10 C -0.219 4.219 11 C -0.041 4.041 12 C -0.222 4.222 13 C 0.149 3.851 14 O -0.581 6.581 15 C -0.081 4.081 16 S 0.038 5.962 17 C -0.051 4.051 18 O -0.456 6.456 19 C -0.098 4.098 20 C -0.211 4.211 21 H 0.299 0.701 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.395 0.605 27 H 0.399 0.601 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -5.127 1.003 5.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.120 3.880 10 C -0.241 4.241 11 C -0.062 4.062 12 C -0.230 4.230 13 C 0.071 3.929 14 O -0.389 6.389 15 C -0.196 4.196 16 S 0.297 5.703 17 C -0.209 4.209 18 O -0.266 6.266 19 C -0.129 4.129 20 C -0.217 4.217 21 H 0.110 0.890 22 H 0.129 0.871 23 H 0.133 0.867 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.245 0.755 27 H 0.255 0.745 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.681 -5.977 0.651 6.050 hybrid contribution 0.003 1.653 0.514 1.731 sum 0.684 -4.324 1.165 4.530 Atomic orbital electron populations 1.69892 1.09311 1.31903 1.30397 1.26985 0.95562 1.05002 0.90887 0.85101 0.78813 0.74625 0.80445 1.18226 1.18626 1.17920 1.19873 0.98749 0.91967 1.37291 0.89403 1.18819 0.91010 0.90271 0.87890 1.21041 1.01221 0.97381 1.04427 1.20490 0.97476 0.91496 0.96727 1.18514 1.00135 0.95415 1.08889 1.20473 0.87175 0.92877 0.92354 1.86447 1.44948 1.38624 1.68859 1.22020 0.99592 0.95285 1.02727 1.83230 1.26418 1.08779 1.51911 1.21727 0.98761 0.92463 1.07983 1.84738 1.33951 1.84813 1.23119 1.20202 0.97353 0.95709 0.99643 1.19021 1.01178 0.93804 1.07651 0.88991 0.87106 0.86709 0.93121 0.93277 0.75516 0.74455 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.77 10.97 21.83 0.24 -38.54 15 2 C 0.04 1.66 5.13 85.24 0.44 2.10 15 3 Si 0.99 35.07 29.60 68.60 2.03 37.11 15 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 6 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 7 C -0.45 -23.10 8.82 23.24 0.20 -22.90 15 8 H 0.09 4.28 7.51 -2.91 -0.02 4.26 15 9 C 0.13 6.71 5.76 -19.63 -0.11 6.60 15 10 C -0.22 -11.57 8.66 22.62 0.20 -11.38 15 11 C -0.04 -2.00 9.29 22.12 0.21 -1.80 15 12 C -0.22 -10.11 5.91 -19.58 -0.12 -10.23 15 13 C 0.15 5.28 7.06 71.24 0.50 5.78 15 14 O -0.58 -18.77 12.04 -148.98 -1.79 -20.57 15 15 C -0.08 -3.78 6.29 22.94 0.14 -3.63 15 16 S 0.04 1.45 22.95 -56.49 -1.30 0.16 15 17 C -0.05 -2.01 7.55 66.78 0.50 -1.50 15 18 O -0.46 -14.85 13.64 -88.54 -1.21 -16.06 15 19 C -0.10 -4.37 9.79 21.60 0.21 -4.16 15 20 C -0.21 -10.61 6.02 -19.95 -0.12 -10.73 15 21 H 0.30 12.99 8.30 -92.70 -0.77 12.23 15 22 H 0.11 5.97 6.16 -2.91 -0.02 5.95 15 23 H 0.11 5.27 6.89 -2.91 -0.02 5.25 15 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.05 1.61 8.14 -2.38 -0.02 1.59 15 26 H 0.40 7.75 9.12 -74.06 -0.68 7.07 15 27 H 0.40 8.67 9.06 -74.06 -0.67 8.00 15 28 H 0.13 5.72 7.71 -2.91 -0.02 5.70 15 Total: -1.00 -62.30 261.82 -0.09 -62.39 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.12 Total: 27.36 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 2.06 Total: -51.85 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.24 Total: -38.54 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -3.00 Total: -36.62 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.11 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.30 Total: 0.16 kcal Total: -62.30 -0.09 -62.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339070.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.744 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds