Wall clock time and date at job start Mon Mar 30 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86796 * 120.00436 * 2 1 4 4 H 1.48500 * 109.47365 * 270.00521 * 3 2 1 5 5 H 1.48505 * 109.46629 * 30.00152 * 3 2 1 6 6 H 1.48501 * 109.47156 * 149.99952 * 3 2 1 7 7 C 1.39980 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99424 * 199.94235 * 7 2 1 9 9 C 1.40411 * 120.00147 * 19.94380 * 7 2 1 10 10 C 1.47882 * 120.43007 * 39.62347 * 9 7 2 11 11 C 1.40092 * 129.14621 * 359.94442 * 10 9 7 12 12 C 1.32641 * 115.79668 * 180.02562 * 11 10 9 13 13 S 1.75502 * 110.65600 * 359.97438 * 12 11 10 14 14 C 1.39549 * 118.13189 * 179.97438 * 10 9 7 15 15 C 1.39865 * 120.17626 * 359.97438 * 14 10 9 16 16 C 1.50696 * 119.21500 * 179.97438 * 15 14 10 17 17 O 1.42901 * 109.47348 * 180.02562 * 16 15 14 18 18 C 1.37783 * 121.56852 * 0.02562 * 15 14 10 19 19 C 1.38355 * 121.01389 * 0.02562 * 18 15 14 20 20 O 1.35714 * 120.02131 * 179.97438 * 19 18 15 21 21 H 0.97006 * 119.99788 * 359.97438 * 1 2 3 22 22 H 1.08003 * 122.10739 * 0.02562 * 11 10 9 23 23 H 1.07999 * 124.67322 * 179.97438 * 12 11 10 24 24 H 1.08999 * 109.47532 * 300.00186 * 16 15 14 25 25 H 1.09006 * 109.47565 * 60.00081 * 16 15 14 26 26 H 0.96696 * 114.00132 * 180.02562 * 17 16 15 27 27 H 1.07995 * 119.49426 * 179.97438 * 18 15 14 28 28 H 0.96707 * 113.99676 * 84.95969 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4400 0.7001 7 6 2.0087 -1.2123 -0.0005 8 1 3.0402 -1.2405 0.3185 9 6 1.3697 -2.3916 -0.4158 10 6 0.4441 -2.3758 -1.5690 11 6 0.0636 -1.3009 -2.3830 12 6 -0.7934 -1.5873 -3.3540 13 16 -1.2104 -3.2919 -3.3290 14 6 -0.1644 -3.5753 -1.9409 15 6 0.1058 -4.7501 -1.2317 16 6 -0.5637 -6.0333 -1.6516 17 8 -0.1428 -7.0939 -0.7913 18 6 0.9688 -4.7620 -0.1576 19 6 1.6023 -3.6053 0.2607 20 8 2.4480 -3.6400 1.3215 21 1 -0.4850 0.8401 0.0004 22 1 0.4442 -0.3019 -2.2296 23 1 -1.1812 -0.8703 -4.0624 24 1 -1.6454 -5.9180 -1.5832 25 1 -0.2876 -6.2677 -2.6797 26 1 -0.5349 -7.9518 -1.0038 27 1 1.1528 -5.6882 0.3663 28 1 3.3521 -3.8984 1.0955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396339801.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:03 Heat of formation + Delta-G solvation = -55.302946 kcal Electronic energy + Delta-G solvation = -15890.770264 eV Core-core repulsion = 13191.030159 eV Total energy + Delta-G solvation = -2699.740105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.58341 -36.51287 -36.09278 -33.88601 -33.09184 -30.07842 -27.76354 -26.67985 -23.74164 -22.49601 -20.57669 -19.24183 -17.97525 -17.00036 -16.29046 -15.83087 -15.28052 -14.69232 -14.44664 -14.04875 -13.81847 -13.17356 -12.97283 -12.32619 -12.05617 -11.65817 -11.48176 -11.36664 -10.99799 -10.91275 -10.60404 -10.35943 -10.12399 -9.87503 -9.42634 -9.25498 -8.95743 -8.07723 -7.19421 -7.09574 -6.56106 -4.52338 1.90149 2.46592 2.63916 2.96732 2.99681 3.00590 3.04447 3.59125 3.77860 4.37372 4.74746 5.11121 5.51642 5.72750 5.91439 6.01758 6.12773 6.29692 6.58225 6.70002 6.88865 6.92930 7.12025 7.29029 7.52782 7.58920 7.66565 7.94052 8.05814 8.16065 8.44620 8.55897 9.07471 9.93875 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.009818 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.312800 B = 2851.285866 C = 3914.756321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.438 4.438 8 H 0.090 0.910 9 C 0.151 3.849 10 C -0.127 4.127 11 C -0.028 4.028 12 C -0.271 4.271 13 S -0.005 6.005 14 C -0.075 4.075 15 C -0.193 4.193 16 C 0.141 3.859 17 O -0.568 6.568 18 C -0.048 4.048 19 C -0.039 4.039 20 O -0.485 6.485 21 H 0.287 0.713 22 H 0.128 0.872 23 H 0.145 0.855 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.369 0.631 27 H 0.115 0.885 28 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -3.561 -4.328 5.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.108 0.892 9 C 0.145 3.855 10 C -0.135 4.135 11 C -0.057 4.057 12 C -0.404 4.404 13 S 0.255 5.745 14 C -0.191 4.191 15 C -0.200 4.200 16 C 0.064 3.936 17 O -0.372 6.372 18 C -0.069 4.069 19 C -0.086 4.086 20 O -0.291 6.291 21 H 0.098 0.902 22 H 0.145 0.855 23 H 0.162 0.838 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.215 0.785 27 H 0.133 0.867 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.327 -3.524 -4.651 5.984 hybrid contribution 1.108 1.189 0.307 1.654 sum -0.219 -2.335 -4.344 4.937 Atomic orbital electron populations 1.69899 1.07689 1.30172 1.31091 1.25972 0.94717 1.01376 0.92375 0.86325 0.80844 0.80207 0.79670 1.18877 1.19979 1.18180 1.19331 0.99378 0.91221 1.36685 0.89165 1.18649 0.87762 0.92498 0.86559 1.18853 1.05237 0.90633 0.98740 1.19786 0.94867 0.99219 0.91801 1.24583 1.10386 0.97381 1.08024 1.83308 1.51590 1.06732 1.32847 1.22006 1.01292 0.96991 0.98763 1.17872 1.08737 0.91052 1.02330 1.20607 0.96070 0.85596 0.91357 1.86500 1.72569 1.19622 1.58508 1.20515 0.95483 0.96795 0.94072 1.18269 1.03178 0.93098 0.94101 1.84870 1.21501 1.91340 1.31377 0.90156 0.85452 0.83760 0.94317 0.94302 0.78520 0.86692 0.79721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.14 10.81 55.55 0.60 -18.54 15 2 C 0.08 1.85 3.86 -17.30 -0.07 1.78 15 3 Si 0.91 17.71 29.60 -169.99 -5.03 12.68 15 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.44 -11.17 8.43 -38.11 -0.32 -11.49 15 8 H 0.09 2.21 7.91 -52.48 -0.42 1.79 15 9 C 0.15 3.96 5.51 -104.13 -0.57 3.38 15 10 C -0.13 -3.23 5.51 -104.77 -0.58 -3.81 15 11 C -0.03 -0.65 8.26 -40.78 -0.34 -0.99 15 12 C -0.27 -5.66 11.11 28.84 0.32 -5.34 15 13 S 0.00 -0.09 22.96 -107.50 -2.47 -2.56 15 14 C -0.08 -1.79 6.31 -38.48 -0.24 -2.03 15 15 C -0.19 -4.39 5.91 -104.18 -0.62 -5.01 15 16 C 0.14 2.59 7.07 36.00 0.25 2.85 15 17 O -0.57 -9.50 12.03 -35.23 -0.42 -9.92 15 18 C -0.05 -1.12 9.22 -39.70 -0.37 -1.49 15 19 C -0.04 -0.98 6.72 -38.54 -0.26 -1.23 15 20 O -0.49 -11.11 12.93 -18.85 -0.24 -11.35 15 21 H 0.29 6.51 8.30 -40.82 -0.34 6.17 15 22 H 0.13 2.99 6.08 -52.48 -0.32 2.67 15 23 H 0.14 2.57 8.06 -52.49 -0.42 2.14 15 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.37 3.97 9.12 45.56 0.42 4.39 15 27 H 0.12 2.56 6.88 -52.49 -0.36 2.20 15 28 H 0.35 6.24 9.06 45.56 0.41 6.66 15 LS Contribution 259.25 15.07 3.91 3.91 Total: -1.00 -29.65 259.25 -7.11 -36.77 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -0.67 Total: 12.38 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.78 Total: -23.37 kcal Atomic # 7 Polarization: -19.14 SS G_CDS: 0.60 Total: -18.54 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.67 Total: -21.27 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.47 Total: -2.56 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.65 -7.11 -36.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339801.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.536 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds