Wall clock time and date at job start Mon Mar 30 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86792 * 119.99537 * 2 1 4 4 H 1.48501 * 109.47158 * 239.99626 * 3 2 1 5 5 H 1.48497 * 109.47640 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47386 * 120.00070 * 3 2 1 7 7 C 1.39857 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00124 * 162.59346 * 7 2 1 9 9 C 1.41116 * 120.00482 * 342.59290 * 7 2 1 10 10 C 1.39871 * 120.09124 * 334.33819 * 9 7 2 11 11 C 1.40392 * 120.20651 * 179.97438 * 10 9 7 12 12 C 1.45670 * 129.05535 * 179.97438 * 11 10 9 13 13 C 1.31613 * 114.91031 * 179.97438 * 12 11 10 14 14 S 1.75251 * 111.55823 * 0.02562 * 13 12 11 15 15 C 1.40284 * 119.23166 * 359.72025 * 11 10 9 16 16 C 1.40212 * 120.26332 * 0.54708 * 15 11 10 17 17 C 1.50694 * 119.67421 * 179.72116 * 16 15 11 18 18 O 1.42905 * 109.47195 * 269.73398 * 17 16 15 19 19 C 1.37305 * 120.65968 * 359.45032 * 16 15 11 20 20 O 1.35754 * 120.08649 * 180.25001 * 19 16 15 21 21 H 0.96995 * 120.00446 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.89861 * 359.97438 * 10 9 7 23 23 H 1.07998 * 122.54699 * 359.97236 * 12 11 10 24 24 H 1.07999 * 124.22219 * 179.97438 * 13 12 11 25 25 H 1.09001 * 109.47165 * 149.72818 * 17 16 15 26 26 H 1.09004 * 109.46932 * 29.73138 * 17 16 15 27 27 H 0.96698 * 114.00000 * 59.99669 * 18 17 16 28 28 H 0.96702 * 114.00295 * 89.99981 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0969 1.6965 1.2125 7 6 2.0085 -1.2112 0.0005 8 1 3.0515 -1.2328 -0.2792 9 6 1.3515 -2.4052 0.3667 10 6 0.2377 -2.3621 1.2116 11 6 -0.4181 -3.5484 1.5770 12 6 -1.5812 -3.7272 2.4355 13 6 -1.9689 -4.9753 2.5910 14 16 -0.9461 -6.0833 1.6979 15 6 0.0534 -4.7727 1.0803 16 6 1.1739 -4.8092 0.2381 17 6 1.6729 -6.1323 -0.2827 18 8 2.6389 -6.6676 0.6242 19 6 1.8178 -3.6510 -0.1211 20 8 2.8985 -3.6994 -0.9412 21 1 -0.4850 0.8400 0.0004 22 1 -0.1190 -1.4132 1.5841 23 1 -2.0871 -2.8985 2.9086 24 1 -2.8116 -5.2789 3.1944 25 1 2.1330 -5.9878 -1.2602 26 1 0.8367 -6.8257 -0.3737 27 1 2.2981 -6.8221 1.5158 28 1 2.6819 -3.6369 -1.8816 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396339834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:05 Heat of formation + Delta-G solvation = -62.999912 kcal Electronic energy + Delta-G solvation = -15798.156919 eV Core-core repulsion = 13098.083048 eV Total energy + Delta-G solvation = -2700.073870 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.85932 -36.39862 -36.04692 -34.40214 -32.67196 -30.31481 -28.06289 -25.47392 -25.12992 -22.13252 -20.88609 -19.69102 -17.56589 -17.01948 -16.41665 -16.33639 -15.31061 -14.74105 -14.56523 -13.75007 -13.69120 -13.20532 -13.10893 -12.44526 -12.15014 -11.90190 -11.56539 -11.42704 -11.18321 -10.74432 -10.57062 -10.23340 -10.00091 -9.94530 -9.88091 -9.25401 -9.01109 -8.42474 -7.37557 -6.94272 -6.85145 -4.49564 1.74329 2.41837 2.45517 2.88298 2.95069 2.98908 3.02933 3.24475 3.81204 4.34240 5.02385 5.20529 5.42110 5.57016 5.57727 5.67071 6.06912 6.15369 6.38053 6.61458 6.70419 6.92149 6.99698 7.18458 7.24312 7.48871 7.72101 7.89652 8.05140 8.24908 8.54467 8.62480 8.90231 9.98642 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.008485 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.873752 B = 3299.259429 C = 4284.759401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.443 4.443 8 H 0.088 0.912 9 C 0.086 3.914 10 C -0.126 4.126 11 C -0.063 4.063 12 C -0.103 4.103 13 C -0.207 4.207 14 S -0.006 6.006 15 C -0.207 4.207 16 C -0.110 4.110 17 C 0.130 3.870 18 O -0.561 6.561 19 C 0.053 3.947 20 O -0.487 6.487 21 H 0.285 0.715 22 H 0.127 0.873 23 H 0.130 0.870 24 H 0.150 0.850 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.372 0.628 28 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -4.221 1.149 4.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.106 0.894 9 C 0.082 3.918 10 C -0.148 4.148 11 C -0.068 4.068 12 C -0.134 4.134 13 C -0.340 4.340 14 S 0.252 5.748 15 C -0.321 4.321 16 C -0.115 4.115 17 C 0.053 3.947 18 O -0.366 6.366 19 C 0.005 3.995 20 O -0.295 6.295 21 H 0.096 0.904 22 H 0.145 0.855 23 H 0.148 0.852 24 H 0.168 0.832 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.218 0.782 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.799 -5.611 0.995 5.976 hybrid contribution -0.586 2.418 0.176 2.494 sum -2.385 -3.193 1.171 4.154 Atomic orbital electron populations 1.69833 1.07632 1.29836 1.33987 1.25988 0.94799 1.01678 0.92129 0.86256 0.80071 0.79596 0.80265 1.18801 1.20251 1.18621 1.19485 0.98393 0.90521 1.38813 0.89393 1.17672 0.91642 0.91736 0.90723 1.21056 0.98752 0.95213 0.99808 1.19150 0.95572 0.93577 0.98549 1.21033 0.96621 0.96488 0.99306 1.24577 1.05233 0.96732 1.07476 1.83286 1.28772 1.11034 1.51700 1.21541 1.03785 0.94761 1.12001 1.19574 0.95092 0.95541 1.01300 1.20910 0.90732 0.90119 0.92986 1.86505 1.40088 1.85546 1.24451 1.18147 0.91328 0.91539 0.98450 1.84781 1.30087 1.95715 1.18878 0.90447 0.85491 0.85187 0.83232 0.89183 0.94130 0.78205 0.78212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.22 11.00 55.54 0.61 -18.61 15 2 C 0.07 1.73 5.12 -17.33 -0.09 1.64 15 3 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 15 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.44 -11.23 8.69 -37.88 -0.33 -11.56 15 8 H 0.09 2.21 7.65 -52.48 -0.40 1.80 15 9 C 0.09 2.22 5.56 -106.88 -0.59 1.62 15 10 C -0.13 -3.15 8.73 -38.16 -0.33 -3.49 15 11 C -0.06 -1.45 6.03 -105.35 -0.63 -2.08 15 12 C -0.10 -2.01 10.38 -38.48 -0.40 -2.41 15 13 C -0.21 -3.60 11.00 28.87 0.32 -3.28 15 14 S -0.01 -0.10 22.50 -107.50 -2.42 -2.52 15 15 C -0.21 -4.53 6.32 -38.07 -0.24 -4.77 15 16 C -0.11 -2.41 5.51 -104.22 -0.57 -2.98 15 17 C 0.13 2.45 6.79 36.00 0.24 2.70 15 18 O -0.56 -10.62 13.67 -35.23 -0.48 -11.10 15 19 C 0.05 1.25 6.68 -38.61 -0.26 0.99 15 20 O -0.49 -10.60 11.75 -18.97 -0.22 -10.82 15 21 H 0.28 6.32 8.30 -40.82 -0.34 5.99 15 22 H 0.13 3.25 6.18 -52.49 -0.32 2.92 15 23 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 24 H 0.15 2.07 8.06 -52.49 -0.42 1.65 15 25 H 0.09 1.61 7.48 -51.93 -0.39 1.22 15 26 H 0.04 0.70 7.57 -51.93 -0.39 0.31 15 27 H 0.37 6.02 9.08 45.56 0.41 6.44 15 28 H 0.36 6.34 9.06 45.56 0.41 6.75 15 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -28.13 262.07 -7.14 -35.28 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -0.66 Total: 14.57 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.89 Total: -23.62 kcal Atomic # 7 Polarization: -19.22 SS G_CDS: 0.61 Total: -18.61 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.70 Total: -21.93 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.42 Total: -2.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.13 -7.14 -35.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396339834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.721 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds