Wall clock time and date at job start Mon Mar 30 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30948 * 1 3 3 Si 1.86796 * 120.00041 * 2 1 4 4 H 1.48503 * 109.46885 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47242 * 119.99572 * 3 2 1 6 6 H 1.48499 * 109.47541 * 239.99879 * 3 2 1 7 7 C 1.39860 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 153.21117 * 7 2 1 9 9 C 1.40756 * 119.99904 * 333.21172 * 7 2 1 10 10 C 1.42178 * 120.14426 * 322.90235 * 9 7 2 11 11 S 1.75905 * 130.45077 * 0.02562 * 10 9 7 12 12 C 1.75311 * 92.16287 * 179.97438 * 11 10 9 13 13 C 1.31902 * 111.29755 * 359.97438 * 12 11 10 14 14 C 1.50695 * 122.55767 * 180.02562 * 13 12 11 15 15 O 1.42909 * 109.47020 * 359.97438 * 14 13 12 16 16 C 1.39252 * 119.75152 * 179.97438 * 10 9 7 17 17 C 1.41615 * 119.10055 * 0.02562 * 16 10 9 18 18 C 1.37374 * 121.03531 * 359.97435 * 17 16 10 19 19 C 1.38678 * 120.68409 * 359.76313 * 18 17 16 20 20 O 1.35643 * 120.14051 * 180.24843 * 19 18 17 21 21 H 0.97007 * 119.99914 * 173.01298 * 1 2 3 22 22 H 1.08002 * 124.35079 * 179.97438 * 12 11 10 23 23 H 1.09002 * 109.47160 * 119.97872 * 14 13 12 24 24 H 1.08999 * 109.47288 * 239.98036 * 14 13 12 25 25 H 0.96693 * 113.99672 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.48202 * 180.02562 * 17 16 10 27 27 H 1.08000 * 119.66103 * 180.02562 * 18 17 16 28 28 H 0.96703 * 114.00203 * 265.49380 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 1.2784 2.7464 0.0006 5 1 3.0972 1.6964 1.2126 6 1 3.0973 1.6964 -1.2124 7 6 2.0088 -1.2112 0.0005 8 1 3.0018 -1.2616 -0.4210 9 6 1.4182 -2.3645 0.5505 10 6 0.6045 -2.2654 1.7121 11 16 0.1553 -0.8632 2.6745 12 6 -0.7985 -1.8404 3.7740 13 6 -0.7708 -3.1136 3.4303 14 6 -1.5063 -4.1782 4.2027 15 8 -2.1917 -3.5796 5.3045 16 6 0.0238 -3.4116 2.2489 17 6 0.2579 -4.6601 1.6230 18 6 1.0446 -4.7533 0.5007 19 6 1.6268 -3.6221 -0.0514 20 8 2.3975 -3.7261 -1.1627 21 1 -0.4850 -0.8339 -0.1022 22 1 -1.3393 -1.4501 4.6235 23 1 -2.2277 -4.6684 3.5489 24 1 -0.7940 -4.9146 4.5747 25 1 -2.6875 -4.2077 5.8474 26 1 -0.1897 -5.5530 2.0340 27 1 1.2080 -5.7168 0.0410 28 1 3.3434 -3.8076 -0.9792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396340677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:14 Heat of formation + Delta-G solvation = -66.765824 kcal Electronic energy + Delta-G solvation = -15821.174968 eV Core-core repulsion = 13120.937795 eV Total energy + Delta-G solvation = -2700.237173 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.67613 -37.21609 -35.75253 -34.39118 -32.80823 -29.70464 -27.75863 -26.50137 -24.85659 -21.67296 -21.35149 -18.94999 -18.17941 -17.24464 -16.94711 -15.79771 -14.82526 -14.69259 -14.40585 -14.04509 -13.94045 -13.68791 -12.96031 -12.30415 -12.08405 -11.87409 -11.67134 -11.30794 -11.03519 -10.77592 -10.43961 -10.16871 -10.03328 -9.75399 -9.69890 -9.32723 -8.74010 -8.34744 -7.45595 -7.25126 -6.45746 -4.56930 1.80097 2.51224 2.73598 3.05837 3.14275 3.27510 3.31518 3.34087 3.97979 4.40219 4.43355 4.99899 5.48168 5.54535 5.60524 5.75186 5.83113 6.08373 6.24090 6.59151 6.69376 6.96064 7.03176 7.22696 7.44138 7.60265 7.67233 7.77825 7.85792 7.91190 8.36496 8.60912 8.97024 9.92438 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.010387 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.733708 B = 2694.959112 C = 3818.685805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.031 3.969 3 Si 1.056 2.944 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.106 3.894 10 C -0.198 4.198 11 S 0.108 5.892 12 C -0.199 4.199 13 C -0.119 4.119 14 C 0.143 3.857 15 O -0.571 6.571 16 C -0.036 4.036 17 C -0.207 4.207 18 C -0.092 4.092 19 C -0.019 4.019 20 O -0.486 6.486 21 H 0.298 0.702 22 H 0.154 0.846 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.376 0.624 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -3.827 5.781 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.192 4.192 3 Si 0.879 3.121 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.536 4.536 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.314 4.314 11 S 0.375 5.625 12 C -0.334 4.334 13 C -0.133 4.133 14 C 0.063 3.937 15 O -0.376 6.376 16 C -0.044 4.044 17 C -0.229 4.229 18 C -0.112 4.112 19 C -0.067 4.067 20 O -0.293 6.293 21 H 0.110 0.890 22 H 0.172 0.828 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.222 0.778 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.627 0.031 5.267 5.304 hybrid contribution 0.034 -3.896 0.433 3.920 sum -0.594 -3.865 5.700 6.912 Atomic orbital electron populations 1.70460 1.07973 1.34208 1.25764 1.26965 0.95555 1.04186 0.92542 0.83737 0.76045 0.74124 0.78236 1.19402 1.19650 1.19967 1.20239 1.04019 0.93939 1.35391 0.89951 1.17245 0.90598 0.93462 0.88817 1.22452 1.11831 0.94825 1.02325 1.84181 1.49413 1.09009 1.19907 1.25122 1.05935 0.97688 1.04614 1.19384 1.02384 0.94238 0.97272 1.20491 0.93709 0.92849 0.86621 1.86463 1.69092 1.39012 1.43053 1.18665 0.97731 0.93972 0.94030 1.19909 1.08560 0.94291 1.00097 1.20615 0.98954 0.96634 0.95031 1.18310 1.04798 0.92004 0.91623 1.84791 1.19627 1.95554 1.29285 0.88952 0.82799 0.92898 0.92899 0.77831 0.88436 0.87988 0.79371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.10 11.45 55.54 0.64 -19.47 15 2 C 0.03 0.78 4.02 -17.32 -0.07 0.71 15 3 Si 1.06 21.68 30.01 -169.99 -5.10 16.58 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.51 -13.31 8.40 -38.02 -0.32 -13.63 15 8 H 0.08 2.10 7.93 -52.49 -0.42 1.68 15 9 C 0.11 2.77 5.01 -106.40 -0.53 2.24 15 10 C -0.20 -5.03 5.33 -37.69 -0.20 -5.23 15 11 S 0.11 2.52 19.90 -107.50 -2.14 0.38 15 12 C -0.20 -4.20 10.28 28.83 0.30 -3.90 15 13 C -0.12 -2.47 5.97 -103.66 -0.62 -3.09 15 14 C 0.14 2.30 7.32 36.00 0.26 2.57 15 15 O -0.57 -8.32 12.48 -35.23 -0.44 -8.76 15 16 C -0.04 -0.85 6.01 -105.36 -0.63 -1.48 15 17 C -0.21 -4.49 9.85 -38.61 -0.38 -4.87 15 18 C -0.09 -2.05 9.91 -39.73 -0.39 -2.44 15 19 C -0.02 -0.46 6.73 -38.39 -0.26 -0.71 15 20 O -0.49 -11.01 12.91 -18.63 -0.24 -11.25 15 21 H 0.30 8.29 7.31 -40.82 -0.30 8.00 15 22 H 0.15 2.96 7.41 -52.49 -0.39 2.57 15 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.38 3.28 9.12 45.56 0.42 3.69 15 26 H 0.10 1.82 8.04 -52.48 -0.42 1.39 15 27 H 0.10 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.35 6.37 9.06 45.56 0.41 6.78 15 LS Contribution 260.11 15.07 3.92 3.92 Total: -1.00 -30.06 260.11 -6.97 -37.04 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -0.76 Total: 11.41 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -2.85 Total: -29.85 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.64 Total: -19.47 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.68 Total: -20.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.10 Total: 16.58 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.14 Total: 0.38 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.06 -6.97 -37.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.728 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds