Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31245 * 1 3 3 Si 1.86798 * 120.00289 * 2 1 4 4 H 1.48498 * 109.47594 * 239.99955 * 3 2 1 5 5 H 1.48506 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47541 * 119.99728 * 3 2 1 7 7 C 1.39564 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99998 * 200.39105 * 7 2 1 9 9 C 1.40668 * 119.99975 * 20.38848 * 7 2 1 10 10 C 1.37462 * 123.23342 * 33.86065 * 9 7 2 11 11 O 1.35245 * 124.57275 * 359.97438 * 10 9 7 12 12 S 1.75184 * 110.85687 * 179.97438 * 10 9 7 13 13 C 1.75875 * 92.75716 * 0.03702 * 12 10 9 14 14 C 1.39798 * 129.71187 * 179.97438 * 13 12 10 15 15 C 1.37653 * 120.47965 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.93924 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47310 * 269.97562 * 16 15 14 18 18 C 1.38646 * 120.11663 * 359.95878 * 15 14 13 19 19 C 1.37356 * 120.23953 * 0.02562 * 18 15 14 20 20 C 1.39286 * 110.62929 * 359.96135 * 13 12 10 21 21 H 0.97010 * 119.99925 * 0.02562 * 1 2 3 22 22 H 0.96700 * 113.99567 * 95.11837 * 11 10 9 23 23 H 1.07997 * 119.76351 * 0.02562 * 14 13 12 24 24 H 1.08997 * 109.47301 * 29.98294 * 16 15 14 25 25 H 1.09003 * 109.46579 * 149.97948 * 16 15 14 26 26 H 0.96700 * 113.99810 * 180.02562 * 17 16 15 27 27 H 1.07996 * 119.88003 * 180.02562 * 18 15 14 28 28 H 1.08008 * 119.77723 * 179.72710 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.1003 1.6964 -1.2124 5 1 1.2815 2.7464 -0.0006 6 1 3.1003 1.6964 1.2125 7 6 2.0103 -1.2087 0.0005 8 1 3.0395 -1.2378 0.3264 9 6 1.3730 -2.3889 -0.4233 10 6 0.4241 -2.4174 -1.4174 11 8 -0.0067 -1.3313 -2.0986 12 16 -0.1521 -4.0503 -1.6831 13 6 0.8969 -4.7139 -0.4371 14 6 1.0443 -6.0349 -0.0039 15 6 1.9334 -6.3454 1.0000 16 6 2.0821 -7.7734 1.4579 17 8 1.1616 -8.0314 2.5200 18 6 2.6926 -5.3467 1.5904 19 6 2.5618 -4.0431 1.1779 20 6 1.6569 -3.7064 0.1523 21 1 -0.4850 0.8401 -0.0004 22 1 0.4511 -1.1865 -2.9380 23 1 0.4563 -6.8175 -0.4602 24 1 1.8740 -8.4455 0.6254 25 1 3.1001 -7.9374 1.8115 26 1 1.2022 -8.9338 2.8652 27 1 3.3893 -5.5947 2.3774 28 1 3.1538 -3.2704 1.6460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396340822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = -77.507453 kcal Electronic energy + Delta-G solvation = -15481.210407 eV Core-core repulsion = 12780.507442 eV Total energy + Delta-G solvation = -2700.702965 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39327 -38.44727 -37.43650 -35.59366 -34.08770 -31.85074 -30.50087 -27.67031 -26.01865 -23.72649 -22.66609 -21.33071 -19.28164 -18.49429 -18.27786 -17.36291 -16.91276 -16.31049 -16.24338 -15.63256 -15.08214 -14.67881 -14.39408 -14.32611 -14.10110 -13.59917 -13.29210 -12.87905 -12.75525 -12.62508 -12.21636 -11.74218 -11.61930 -11.35658 -10.88489 -10.87913 -10.52870 -10.13175 -8.93750 -8.66994 -8.42219 -6.26208 0.03344 0.42506 0.98647 1.30762 1.40213 1.51117 1.67553 1.80533 2.25048 2.74098 3.26434 3.66285 3.88640 4.05133 4.16274 4.31138 4.47604 4.58681 4.66297 4.70946 5.01506 5.13685 5.22384 5.39511 5.54115 5.62565 5.82708 6.07989 6.43580 6.72721 6.90931 7.03075 7.34999 8.43986 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030550 B = 0.007116 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.313433 B = 3933.874478 C = 4627.746449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.042 3.958 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.054 3.946 10 C -0.160 4.160 11 O -0.426 6.426 12 S -0.039 6.039 13 C -0.135 4.135 14 C -0.083 4.083 15 C -0.095 4.095 16 C 0.128 3.872 17 O -0.591 6.591 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.086 4.086 21 H 0.281 0.719 22 H 0.343 0.657 23 H 0.135 0.865 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.400 0.600 27 H 0.155 0.845 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -10.704 1.867 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.507 4.507 8 H 0.099 0.901 9 C 0.043 3.957 10 C -0.320 4.320 11 O -0.229 6.229 12 S 0.219 5.781 13 C -0.251 4.251 14 C -0.106 4.106 15 C -0.098 4.098 16 C 0.051 3.949 17 O -0.401 6.401 18 C -0.130 4.130 19 C -0.111 4.111 20 C -0.095 4.095 21 H 0.091 0.909 22 H 0.194 0.806 23 H 0.153 0.847 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.250 0.750 27 H 0.173 0.827 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.130 -10.382 1.217 11.240 hybrid contribution 1.209 1.167 0.291 1.706 sum 5.339 -9.215 1.508 10.756 Atomic orbital electron populations 1.70045 1.09096 1.30010 1.32401 1.26571 0.95137 1.03899 0.92013 0.85316 0.78633 0.76094 0.79973 1.18573 1.20060 1.18243 1.18982 0.99037 0.91969 1.40754 0.90115 1.18230 0.93563 0.91749 0.92135 1.21645 1.14511 0.87695 1.08112 1.84909 1.61003 1.42058 1.34917 1.82874 1.48497 1.05025 1.41692 1.22445 1.02053 0.97764 1.02801 1.20578 0.99042 0.92711 0.98287 1.19796 0.97118 0.96764 0.96097 1.20953 0.93596 0.90183 0.90136 1.86557 1.62342 1.37469 1.53686 1.21060 1.00650 0.91125 1.00178 1.21127 0.97164 0.97380 0.95470 1.19775 0.98346 0.93280 0.98107 0.90851 0.80558 0.84701 0.91016 0.89978 0.74987 0.82712 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.42 11.04 21.78 0.24 -44.18 15 2 C 0.04 2.20 4.72 85.10 0.40 2.60 15 3 Si 0.98 39.55 29.61 68.60 2.03 41.59 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.28 -10.83 7.11 99.48 0.71 -10.13 15 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 7 C -0.48 -25.92 8.89 23.18 0.21 -25.71 15 8 H 0.08 4.15 7.92 -2.91 -0.02 4.13 15 9 C 0.05 2.99 5.51 -20.70 -0.11 2.88 15 10 C -0.16 -8.74 7.01 67.64 0.47 -8.26 15 11 O -0.43 -22.70 10.83 -85.28 -0.92 -23.62 15 12 S -0.04 -1.84 23.19 -56.49 -1.31 -3.15 15 13 C -0.14 -6.21 6.41 22.90 0.15 -6.06 15 14 C -0.08 -3.07 9.71 22.51 0.22 -2.85 15 15 C -0.10 -3.03 5.50 -19.91 -0.11 -3.14 15 16 C 0.13 2.73 7.17 71.24 0.51 3.24 15 17 O -0.59 -13.39 13.64 -148.98 -2.03 -15.42 15 18 C -0.11 -3.61 9.67 22.16 0.21 -3.39 15 19 C -0.09 -3.79 9.82 22.70 0.22 -3.57 15 20 C -0.09 -4.26 6.00 -20.22 -0.12 -4.38 15 21 H 0.28 14.63 8.31 -92.70 -0.77 13.86 15 22 H 0.34 15.40 9.06 -74.06 -0.67 14.73 15 23 H 0.14 4.32 8.06 -2.91 -0.02 4.29 15 24 H 0.07 1.24 8.08 -2.39 -0.02 1.22 15 25 H 0.08 1.29 8.09 -2.39 -0.02 1.27 15 26 H 0.40 4.27 9.12 -74.06 -0.68 3.60 15 27 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 28 H 0.13 4.94 8.03 -2.91 -0.02 4.92 15 Total: -1.00 -70.41 264.74 -0.07 -70.49 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.13 Total: 22.95 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 2.05 Total: -48.64 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.24 Total: -44.18 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -2.96 Total: -39.04 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -1.31 Total: -3.15 kcal Total: -70.41 -0.07 -70.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396340822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.021 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds