Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31078 * 1 3 3 Si 1.86800 * 120.00252 * 2 1 4 4 H 1.48503 * 109.47210 * 274.76707 * 3 2 1 5 5 H 1.48497 * 109.47243 * 34.76692 * 3 2 1 6 6 H 1.48497 * 109.47289 * 154.76694 * 3 2 1 7 7 C 1.39705 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 336.08240 * 7 2 1 9 9 C 1.40808 * 120.00182 * 156.08396 * 7 2 1 10 10 C 1.36453 * 123.29778 * 138.28930 * 9 7 2 11 11 C 1.50696 * 124.03515 * 0.24419 * 10 9 7 12 12 O 1.42903 * 109.47069 * 86.74729 * 11 10 9 13 13 S 1.69979 * 111.93263 * 180.27043 * 10 9 7 14 14 C 1.75783 * 93.22712 * 359.97438 * 13 10 9 15 15 C 1.39241 * 110.20098 * 0.02562 * 14 13 10 16 16 C 1.40664 * 119.26872 * 179.97438 * 15 14 13 17 17 C 1.37470 * 120.42407 * 0.09539 * 16 15 14 18 18 C 1.38573 * 120.31411 * 359.90329 * 17 16 15 19 19 C 1.38136 * 120.12387 * 0.04212 * 18 17 16 20 20 O 1.35925 * 119.86791 * 179.97438 * 19 18 17 21 21 H 0.97002 * 119.99518 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47550 * 206.74601 * 11 10 9 23 23 H 1.08998 * 109.47169 * 326.74189 * 11 10 9 24 24 H 0.96702 * 113.99680 * 184.75984 * 12 11 10 25 25 H 1.08002 * 119.78632 * 179.97438 * 16 15 14 26 26 H 1.08004 * 119.84164 * 179.97438 * 17 16 15 27 27 H 1.07999 * 119.93794 * 180.02562 * 18 17 16 28 28 H 0.96697 * 113.99757 * 270.02116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 2.3916 2.1046 -1.3952 5 1 1.4964 2.6215 0.7984 6 1 3.5891 1.4131 0.5968 7 6 2.0093 -1.2099 -0.0005 8 1 1.5388 -2.1052 0.3783 9 6 3.3267 -1.2620 -0.4949 10 6 4.3257 -1.9695 0.1081 11 6 4.1445 -2.7810 1.3649 12 8 3.6978 -4.0947 1.0234 13 16 5.7990 -1.8256 -0.7273 14 6 5.1121 -0.7772 -1.9597 15 6 3.7611 -0.5567 -1.7049 16 6 3.0210 0.2609 -2.5781 17 6 3.6233 0.8351 -3.6723 18 6 4.9679 0.6158 -3.9260 19 6 5.7118 -0.1832 -3.0796 20 8 7.0301 -0.3952 -3.3336 21 1 -0.4849 0.8401 0.0004 22 1 5.0945 -2.8466 1.8952 23 1 3.4041 -2.3002 2.0042 24 1 3.4903 -4.6505 1.7871 25 1 1.9725 0.4372 -2.3886 26 1 3.0461 1.4610 -4.3368 27 1 5.4350 1.0703 -4.7872 28 1 7.2041 -1.1643 -3.8934 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396341279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = -55.341209 kcal Electronic energy + Delta-G solvation = -15925.669386 eV Core-core repulsion = 13225.927622 eV Total energy + Delta-G solvation = -2699.741764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24309 -37.02794 -35.97146 -34.31384 -32.78334 -29.61737 -29.05892 -27.01859 -24.43931 -22.25763 -21.17649 -19.47707 -18.15579 -16.62352 -16.57935 -16.48477 -15.31998 -15.07115 -14.79014 -14.27451 -13.90754 -13.09434 -12.91588 -12.64792 -12.57315 -11.99718 -11.66384 -11.40951 -11.12658 -10.60341 -10.43068 -10.39518 -10.17404 -9.79120 -9.69094 -9.26517 -9.12050 -8.31649 -7.66436 -6.99129 -6.74127 -4.47251 1.49801 1.75268 2.58328 2.88545 3.12106 3.20151 3.35275 3.46114 3.94258 4.19635 4.60395 4.88604 5.35839 5.41666 5.55503 5.84324 5.95541 6.01913 6.20102 6.32415 6.48849 6.67645 6.79365 6.89216 7.00325 7.09746 7.36304 7.81205 8.00509 8.27215 8.38984 8.47706 8.74330 10.03662 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.013869 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.454174 B = 2018.415587 C = 3257.579458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.094 3.906 3 Si 0.872 3.128 4 H -0.247 1.247 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.440 4.440 8 H 0.098 0.902 9 C 0.101 3.899 10 C -0.376 4.376 11 C 0.185 3.815 12 O -0.572 6.572 13 S 0.086 5.914 14 C -0.155 4.155 15 C -0.064 4.064 16 C -0.074 4.074 17 C -0.134 4.134 18 C -0.137 4.137 19 C 0.112 3.888 20 O -0.497 6.497 21 H 0.284 0.716 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.360 0.640 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 0.582 -3.296 7.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.172 1.172 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.472 4.472 8 H 0.116 0.884 9 C 0.091 3.909 10 C -0.492 4.492 11 C 0.107 3.893 12 O -0.376 6.376 13 S 0.351 5.649 14 C -0.271 4.271 15 C -0.074 4.074 16 C -0.094 4.094 17 C -0.156 4.156 18 C -0.157 4.157 19 C 0.062 3.938 20 O -0.306 6.306 21 H 0.094 0.906 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.205 0.795 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.720 0.754 -3.165 8.378 hybrid contribution -1.417 0.689 0.069 1.578 sum 6.303 1.443 -3.097 7.169 Atomic orbital electron populations 1.69872 1.07879 1.30036 1.35036 1.25974 0.94376 1.01053 0.91153 0.87030 0.81890 0.81096 0.80436 1.17155 1.20770 1.17267 1.18772 0.94500 0.96919 1.36980 0.88438 1.17403 0.93442 0.91110 0.88937 1.22718 0.96234 1.22355 1.07865 1.19823 0.95884 0.81214 0.92426 1.86696 1.89111 1.25811 1.36033 1.81816 1.12723 1.49538 1.20849 1.23063 0.97884 1.04967 1.01192 1.19609 0.91742 0.99129 0.96912 1.21119 1.00323 0.94746 0.93210 1.20643 0.94369 1.02145 0.98428 1.21004 0.94067 1.01126 0.99544 1.17674 0.82961 0.99475 0.93654 1.84819 1.21078 1.51652 1.73019 0.90564 0.95466 0.92621 0.79527 0.85418 0.85993 0.85755 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.85 13.94 55.54 0.77 -20.08 15 2 C 0.09 2.40 4.54 -17.33 -0.08 2.32 15 3 Si 0.87 19.96 24.43 -169.99 -4.15 15.80 15 4 H -0.25 -5.32 5.54 56.52 0.31 -5.01 15 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 6 H -0.25 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.44 -11.85 8.65 -38.06 -0.33 -12.18 15 8 H 0.10 2.82 8.06 -52.49 -0.42 2.40 15 9 C 0.10 2.60 4.68 -106.18 -0.50 2.10 15 10 C -0.38 -9.07 5.93 -34.95 -0.21 -9.28 15 11 C 0.18 3.93 7.08 36.00 0.25 4.18 15 12 O -0.57 -11.77 13.64 -35.23 -0.48 -12.26 15 13 S 0.09 1.85 22.85 -107.50 -2.46 -0.60 15 14 C -0.15 -3.45 6.39 -38.46 -0.25 -3.69 15 15 C -0.06 -1.53 4.79 -105.22 -0.50 -2.04 15 16 C -0.07 -1.62 6.59 -38.95 -0.26 -1.88 15 17 C -0.13 -2.45 10.01 -39.74 -0.40 -2.85 15 18 C -0.14 -2.37 9.96 -39.50 -0.39 -2.77 15 19 C 0.11 2.16 6.73 -38.87 -0.26 1.90 15 20 O -0.50 -8.17 13.47 -19.50 -0.26 -8.44 15 21 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.06 1.19 7.65 -51.93 -0.40 0.79 15 24 H 0.36 5.25 9.12 45.56 0.42 5.67 15 25 H 0.13 2.84 5.73 -52.49 -0.30 2.54 15 26 H 0.12 1.83 8.06 -52.48 -0.42 1.41 15 27 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.38 4.40 9.06 45.56 0.41 4.82 15 LS Contribution 255.63 15.07 3.85 3.85 Total: -1.00 -30.57 255.63 -6.43 -37.00 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.78 Total: 8.90 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -2.92 Total: -24.18 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.77 Total: -20.08 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.74 Total: -20.69 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.15 Total: 15.80 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.46 Total: -0.60 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.57 -6.43 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.346 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds