Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31078 * 1 3 3 Si 1.86800 * 120.00252 * 2 1 4 4 H 1.48503 * 109.47210 * 274.76707 * 3 2 1 5 5 H 1.48497 * 109.47243 * 34.76692 * 3 2 1 6 6 H 1.48497 * 109.47289 * 154.76694 * 3 2 1 7 7 C 1.39705 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 336.08240 * 7 2 1 9 9 C 1.40808 * 120.00182 * 156.08396 * 7 2 1 10 10 C 1.36453 * 123.29778 * 138.28930 * 9 7 2 11 11 C 1.50696 * 124.03515 * 0.24419 * 10 9 7 12 12 O 1.42903 * 109.47069 * 86.74729 * 11 10 9 13 13 S 1.69979 * 111.93263 * 180.27043 * 10 9 7 14 14 C 1.75783 * 93.22712 * 359.97438 * 13 10 9 15 15 C 1.39241 * 110.20098 * 0.02562 * 14 13 10 16 16 C 1.40664 * 119.26872 * 179.97438 * 15 14 13 17 17 C 1.37470 * 120.42407 * 0.09539 * 16 15 14 18 18 C 1.38573 * 120.31411 * 359.90329 * 17 16 15 19 19 C 1.38136 * 120.12387 * 0.04212 * 18 17 16 20 20 O 1.35925 * 119.86791 * 179.97438 * 19 18 17 21 21 H 0.97002 * 119.99518 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47550 * 206.74601 * 11 10 9 23 23 H 1.08998 * 109.47169 * 326.74189 * 11 10 9 24 24 H 0.96702 * 113.99680 * 184.75984 * 12 11 10 25 25 H 1.08002 * 119.78632 * 179.97438 * 16 15 14 26 26 H 1.08004 * 119.84164 * 179.97438 * 17 16 15 27 27 H 1.07999 * 119.93794 * 180.02562 * 18 17 16 28 28 H 0.96697 * 113.99757 * 270.02116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 2.3916 2.1046 -1.3952 5 1 1.4964 2.6215 0.7984 6 1 3.5891 1.4131 0.5968 7 6 2.0093 -1.2099 -0.0005 8 1 1.5388 -2.1052 0.3783 9 6 3.3267 -1.2620 -0.4949 10 6 4.3257 -1.9695 0.1081 11 6 4.1445 -2.7810 1.3649 12 8 3.6978 -4.0947 1.0234 13 16 5.7990 -1.8256 -0.7273 14 6 5.1121 -0.7772 -1.9597 15 6 3.7611 -0.5567 -1.7049 16 6 3.0210 0.2609 -2.5781 17 6 3.6233 0.8351 -3.6723 18 6 4.9679 0.6158 -3.9260 19 6 5.7118 -0.1832 -3.0796 20 8 7.0301 -0.3952 -3.3336 21 1 -0.4849 0.8401 0.0004 22 1 5.0945 -2.8466 1.8952 23 1 3.4041 -2.3002 2.0042 24 1 3.4903 -4.6505 1.7871 25 1 1.9725 0.4372 -2.3886 26 1 3.0461 1.4610 -4.3368 27 1 5.4350 1.0703 -4.7872 28 1 7.2041 -1.1643 -3.8934 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396341279.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = -79.943626 kcal Electronic energy + Delta-G solvation = -15926.736227 eV Core-core repulsion = 13225.927622 eV Total energy + Delta-G solvation = -2700.808605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77197 -38.58258 -37.54900 -36.00179 -34.61527 -31.24582 -30.60680 -28.84551 -26.14801 -23.82265 -22.74323 -21.31709 -19.67958 -18.29809 -18.25489 -18.12952 -17.01488 -16.64520 -16.40369 -15.82746 -15.46073 -14.91842 -14.55410 -14.36687 -14.23083 -13.62601 -13.27343 -13.00132 -12.95000 -12.29659 -12.15375 -12.05704 -11.81790 -11.46020 -11.35387 -11.08247 -10.81104 -9.96695 -9.32187 -8.90492 -8.45472 -6.43002 -0.11554 0.21990 0.93775 1.11747 1.26840 1.38433 1.56781 1.65298 2.10238 2.57948 2.97546 3.29804 3.76163 3.99967 4.10436 4.25065 4.36234 4.49476 4.61741 4.75098 4.88995 5.10600 5.18044 5.24557 5.34250 5.49678 5.86537 5.97809 6.20477 6.55627 6.77864 6.81991 7.01451 8.18397 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.013869 C = 0.008593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.454174 B = 2018.415587 C = 3257.579458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.222 1.222 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.472 4.472 8 H 0.056 0.944 9 C 0.076 3.924 10 C -0.389 4.389 11 C 0.184 3.816 12 O -0.590 6.590 13 S 0.112 5.888 14 C -0.181 4.181 15 C -0.094 4.094 16 C -0.103 4.103 17 C -0.116 4.116 18 C -0.122 4.122 19 C 0.120 3.880 20 O -0.496 6.496 21 H 0.293 0.707 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.386 0.614 25 H 0.114 0.886 26 H 0.162 0.838 27 H 0.171 0.829 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 1.998 -5.382 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.145 1.145 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.066 3.934 10 C -0.505 4.505 11 C 0.106 3.894 12 O -0.397 6.397 13 S 0.377 5.623 14 C -0.297 4.297 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.143 4.143 19 C 0.070 3.930 20 O -0.309 6.309 21 H 0.104 0.896 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.235 0.765 25 H 0.132 0.868 26 H 0.179 0.821 27 H 0.188 0.812 28 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.858 2.142 -5.264 11.379 hybrid contribution -1.906 0.121 0.642 2.015 sum 7.952 2.264 -4.622 9.472 Atomic orbital electron populations 1.69883 1.08814 1.31216 1.36870 1.26436 0.94794 1.02914 0.90422 0.86314 0.79376 0.78439 0.81675 1.14496 1.19451 1.19949 1.18597 0.95927 0.96288 1.39601 0.92580 1.17665 0.93243 0.92493 0.90018 1.23370 0.97595 1.21068 1.08483 1.19844 0.96888 0.81262 0.91442 1.86596 1.89268 1.25720 1.38161 1.81471 1.10695 1.49625 1.20464 1.23390 0.97652 1.06016 1.02655 1.19641 0.93009 1.00740 0.96972 1.21197 0.99903 0.96323 0.94858 1.21124 0.95152 1.00530 0.96924 1.21482 0.93432 0.99431 0.99948 1.17837 0.83887 0.98650 0.92640 1.84758 1.19333 1.53062 1.73725 0.89628 0.92724 0.93779 0.76531 0.86819 0.82057 0.81200 0.73581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.41 13.94 21.80 0.30 -45.11 15 2 C 0.07 3.74 4.54 85.16 0.39 4.12 15 3 Si 0.92 41.69 24.43 68.60 1.68 43.36 15 4 H -0.22 -9.04 5.54 99.48 0.55 -8.49 15 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 6 H -0.27 -13.45 7.11 99.48 0.71 -12.74 15 7 C -0.47 -26.89 8.65 23.25 0.20 -26.69 15 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 9 C 0.08 4.04 4.68 -20.87 -0.10 3.95 15 10 C -0.39 -19.08 5.93 25.27 0.15 -18.93 15 11 C 0.18 7.95 7.08 71.23 0.50 8.45 15 12 O -0.59 -24.52 13.64 -148.98 -2.03 -26.56 15 13 S 0.11 4.75 22.85 -56.49 -1.29 3.46 15 14 C -0.18 -7.75 6.39 23.00 0.15 -7.61 15 15 C -0.09 -4.49 4.79 -20.25 -0.10 -4.59 15 16 C -0.10 -4.36 6.59 22.68 0.15 -4.21 15 17 C -0.12 -3.76 10.01 22.17 0.22 -3.54 15 18 C -0.12 -3.60 9.96 22.33 0.22 -3.38 15 19 C 0.12 4.16 6.73 22.73 0.15 4.31 15 20 O -0.50 -14.10 13.47 -92.70 -1.25 -15.35 15 21 H 0.29 14.17 8.30 -92.71 -0.77 13.40 15 22 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.04 1.97 7.65 -2.39 -0.02 1.96 15 24 H 0.39 11.22 9.12 -74.06 -0.68 10.55 15 25 H 0.11 5.05 5.73 -2.91 -0.02 5.03 15 26 H 0.16 3.92 8.06 -2.91 -0.02 3.89 15 27 H 0.17 3.51 8.06 -2.91 -0.02 3.49 15 28 H 0.41 7.46 9.06 -74.06 -0.67 6.79 15 Total: -1.00 -68.69 255.63 -0.93 -69.62 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.28 Total: 18.69 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 1.94 Total: -48.11 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.30 Total: -45.11 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -3.28 Total: -41.91 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.68 Total: 43.36 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.29 Total: 3.46 kcal Total: -68.69 -0.93 -69.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341279.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.324 kcal (2) G-P(sol) polarization free energy of solvation -68.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds