Wall clock time and date at job start Mon Mar 30 2020 06:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47132 * 274.69024 * 3 2 1 5 5 H 1.48498 * 109.47128 * 34.69343 * 3 2 1 6 6 H 1.48502 * 109.46759 * 154.68772 * 3 2 1 7 7 C 1.39911 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99628 * 197.92572 * 7 2 1 9 9 C 1.40920 * 119.99716 * 17.92291 * 7 2 1 10 10 C 1.40330 * 120.07431 * 25.01832 * 9 7 2 11 11 C 1.38292 * 119.84350 * 179.97438 * 10 9 7 12 12 O 1.35966 * 119.67734 * 179.72077 * 11 10 9 13 13 C 1.38298 * 120.64023 * 359.97438 * 11 10 9 14 14 C 1.41336 * 120.85282 * 359.97438 * 13 11 10 15 15 C 1.45486 * 129.11698 * 179.97438 * 14 13 11 16 16 C 1.31863 * 114.88309 * 180.02562 * 15 14 13 17 17 C 1.50703 * 124.33307 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.47034 * 89.99629 * 17 16 15 19 19 S 1.75300 * 111.33962 * 0.02562 * 16 15 14 20 20 C 1.39423 * 119.04576 * 0.02562 * 14 13 11 21 21 H 0.96998 * 120.00144 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.08019 * 359.97438 * 10 9 7 23 23 H 0.96705 * 113.99657 * 90.00581 * 12 11 10 24 24 H 1.08000 * 119.57554 * 179.97438 * 13 11 10 25 25 H 1.07996 * 122.55712 * 0.02562 * 15 14 13 26 26 H 1.08989 * 109.47321 * 209.99796 * 17 16 15 27 27 H 1.09003 * 109.46467 * 330.00288 * 17 16 15 28 28 H 0.96707 * 113.99667 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3911 2.1037 -1.3953 5 1 1.4933 2.6220 0.7969 6 1 3.5863 1.4136 0.5986 7 6 2.0084 -1.2117 -0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3550 -2.4023 -0.3766 10 6 0.2360 -2.3535 -1.2220 11 6 -0.4012 -3.5248 -1.5885 12 8 -1.4886 -3.4732 -2.4031 13 6 0.0537 -4.7478 -1.1303 14 6 1.1787 -4.8299 -0.2786 15 6 1.8048 -6.0067 0.3042 16 6 2.8519 -5.7581 1.0663 17 6 3.6585 -6.8163 1.7739 18 8 4.7198 -7.2545 0.9233 19 16 3.1847 -4.0392 1.1521 20 6 1.8297 -3.6559 0.0980 21 1 -0.4850 0.8400 0.0004 22 1 -0.1268 -1.4034 -1.5855 23 1 -1.2769 -3.5236 -3.3454 24 1 -0.4572 -5.6519 -1.4270 25 1 1.4399 -7.0074 0.1263 26 1 4.0758 -6.4020 2.6915 27 1 3.0148 -7.6618 2.0167 28 1 5.2813 -7.9376 1.3149 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396341390.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:14 Heat of formation + Delta-G solvation = -86.510920 kcal Electronic energy + Delta-G solvation = -15345.393123 eV Core-core repulsion = 12644.299738 eV Total energy + Delta-G solvation = -2701.093384 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25331 -38.44300 -37.62215 -36.39211 -34.31224 -31.44664 -30.35300 -27.46954 -26.69671 -23.58809 -22.66609 -21.22093 -19.46426 -18.38977 -18.35582 -17.87661 -16.89424 -16.51449 -16.25793 -15.68802 -15.08923 -14.81582 -14.67438 -14.21624 -13.89454 -13.37617 -13.15833 -12.91100 -12.79814 -12.50022 -12.30246 -12.04225 -11.55148 -11.43761 -11.13868 -11.00937 -10.90966 -10.09241 -9.08961 -8.81618 -8.48701 -6.46031 0.08585 0.67064 0.91913 1.31610 1.35917 1.44673 1.49754 1.66869 2.14328 2.58073 3.30625 3.46870 3.69257 4.06421 4.28803 4.41220 4.44887 4.57753 4.76129 4.93371 5.06659 5.12982 5.29877 5.38483 5.68354 5.77317 5.94374 6.05741 6.33590 6.69330 6.72303 6.95748 7.12254 8.17789 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020948 B = 0.008281 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.311510 B = 3380.288789 C = 4573.167997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.481 4.481 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.226 4.226 11 C 0.130 3.870 12 O -0.513 6.513 13 C -0.247 4.247 14 C -0.050 4.050 15 C -0.114 4.114 16 C -0.177 4.177 17 C 0.155 3.845 18 O -0.586 6.586 19 S 0.054 5.946 20 C -0.246 4.246 21 H 0.294 0.706 22 H 0.114 0.886 23 H 0.398 0.602 24 H 0.123 0.877 25 H 0.160 0.840 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -7.714 1.640 9.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.509 4.509 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.249 4.249 11 C 0.085 3.915 12 O -0.325 6.325 13 C -0.270 4.270 14 C -0.057 4.057 15 C -0.146 4.146 16 C -0.292 4.292 17 C 0.076 3.924 18 O -0.396 6.396 19 S 0.318 5.682 20 C -0.361 4.361 21 H 0.105 0.895 22 H 0.132 0.868 23 H 0.255 0.745 24 H 0.141 0.859 25 H 0.177 0.823 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.605 -6.271 2.573 8.795 hybrid contribution -0.692 -0.279 -0.931 1.193 sum 4.913 -6.550 1.642 8.351 Atomic orbital electron populations 1.69905 1.09161 1.31256 1.32860 1.26838 0.95474 1.04722 0.90885 0.85141 0.79171 0.75425 0.79796 1.18231 1.18745 1.18039 1.19734 0.98368 0.92254 1.40529 0.90304 1.17142 0.91403 0.90429 0.88767 1.21279 1.00982 0.97167 1.05504 1.18135 0.86855 0.92337 0.94188 1.84716 1.30200 1.96400 1.21144 1.20554 1.00761 0.96555 1.09090 1.19193 0.96272 0.91712 0.98523 1.21041 0.96819 0.98461 0.98302 1.24046 1.01433 0.97741 1.06023 1.20490 0.88163 0.93347 0.90447 1.86549 1.44983 1.62128 1.45938 1.83356 1.32299 0.99933 1.52601 1.22980 1.04996 0.97665 1.10441 0.89496 0.86800 0.74518 0.85895 0.82254 0.91098 0.88974 0.74635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.24 10.98 21.82 0.24 -42.00 15 2 C 0.04 1.92 5.12 85.24 0.44 2.36 15 3 Si 0.99 37.69 29.60 68.60 2.03 39.72 15 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 6 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 7 C -0.48 -26.04 8.82 23.33 0.21 -25.84 15 8 H 0.08 4.18 7.74 -2.91 -0.02 4.16 15 9 C 0.13 7.12 5.59 -21.13 -0.12 7.00 15 10 C -0.23 -12.28 8.59 22.79 0.20 -12.09 15 11 C 0.13 6.35 6.66 22.30 0.15 6.50 15 12 O -0.51 -21.51 13.48 -93.16 -1.26 -22.77 15 13 C -0.25 -11.46 10.03 23.05 0.23 -11.23 15 14 C -0.05 -2.33 6.03 -20.36 -0.12 -2.46 15 15 C -0.11 -4.40 10.22 23.33 0.24 -4.16 15 16 C -0.18 -6.41 6.01 24.87 0.15 -6.26 15 17 C 0.15 3.84 7.48 71.24 0.53 4.37 15 18 O -0.59 -14.43 13.64 -148.98 -2.03 -16.46 15 19 S 0.05 2.35 22.78 -56.49 -1.29 1.07 15 20 C -0.25 -12.63 6.36 23.54 0.15 -12.48 15 21 H 0.29 13.76 8.30 -92.71 -0.77 12.99 15 22 H 0.11 6.42 6.16 -2.91 -0.02 6.40 15 23 H 0.40 12.04 9.06 -74.05 -0.67 11.37 15 24 H 0.12 4.97 8.06 -2.91 -0.02 4.95 15 25 H 0.16 4.97 8.06 -2.91 -0.02 4.95 15 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.40 4.83 9.12 -74.05 -0.68 4.15 15 Total: -1.00 -68.64 265.49 -0.38 -69.02 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.12 Total: 25.69 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 2.05 Total: -54.27 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -3.29 Total: -39.23 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.29 Total: 1.07 kcal Total: -68.64 -0.38 -69.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341390.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.489 kcal (2) G-P(sol) polarization free energy of solvation -68.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds