Wall clock time and date at job start Mon Mar 30 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47328 * 84.85383 * 3 2 1 5 5 H 1.48506 * 109.46906 * 204.85044 * 3 2 1 6 6 H 1.48501 * 109.47414 * 324.85031 * 3 2 1 7 7 C 1.39895 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99763 * 19.50826 * 7 2 1 9 9 C 1.40867 * 119.99981 * 199.49932 * 7 2 1 10 10 C 1.40363 * 120.23180 * 26.13951 * 9 7 2 11 11 C 1.38769 * 120.05295 * 179.76414 * 10 9 7 12 12 S 1.76066 * 130.39532 * 180.19275 * 11 10 9 13 13 C 1.75462 * 91.56100 * 180.29219 * 12 11 10 14 14 C 1.32434 * 110.87772 * 0.02562 * 13 12 11 15 15 C 1.50698 * 122.06021 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.47058 * 0.02562 * 15 14 13 17 17 C 1.40434 * 120.25589 * 0.50948 * 11 10 9 18 18 C 1.41810 * 119.08762 * 359.74648 * 17 11 10 19 19 C 1.35774 * 120.82581 * 359.97438 * 18 17 11 20 20 O 1.35831 * 119.87987 * 179.97438 * 19 18 17 21 21 H 0.96999 * 119.99805 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.97882 * 359.97438 * 10 9 7 23 23 H 1.08005 * 124.56454 * 179.97438 * 13 12 11 24 24 H 1.09002 * 109.47732 * 120.02204 * 15 14 13 25 25 H 1.09003 * 109.47579 * 240.02306 * 15 14 13 26 26 H 0.96697 * 113.99934 * 179.97438 * 16 15 14 27 27 H 1.08004 * 119.58929 * 180.02562 * 18 17 11 28 28 H 0.96702 * 113.99795 * 269.26527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3818 2.1092 1.3944 5 1 3.5908 1.4111 -0.5884 6 1 1.4992 2.6188 -0.8060 7 6 2.0085 -1.2116 0.0005 8 1 1.5149 -2.1201 -0.3114 9 6 3.3566 -1.2464 0.4078 10 6 3.8515 -0.2797 1.2970 11 6 5.1789 -0.3204 1.6995 12 16 6.0732 0.7332 2.7903 13 6 7.5446 -0.1937 2.5564 14 6 7.3399 -1.2013 1.7217 15 6 8.4379 -2.1610 1.3419 16 8 9.6454 -1.7926 2.0116 17 6 6.0357 -1.3207 1.2122 18 6 5.5236 -2.2878 0.3102 19 6 4.2240 -2.2545 -0.0815 20 8 3.7539 -3.1902 -0.9467 21 1 -0.4850 0.8401 -0.0004 22 1 3.1978 0.4945 1.6709 23 1 8.4901 0.0281 3.0289 24 1 8.1543 -3.1720 1.6343 25 1 8.5950 -2.1253 0.2638 26 1 10.3964 -2.3687 1.8138 27 1 6.1753 -3.0610 -0.0692 28 1 3.8259 -2.9368 -1.8772 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396341795.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:33 Heat of formation + Delta-G solvation = -61.177863 kcal Electronic energy + Delta-G solvation = -15612.608465 eV Core-core repulsion = 12912.613605 eV Total energy + Delta-G solvation = -2699.994860 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07106 -37.37053 -35.93171 -34.57001 -32.94265 -29.93658 -29.02938 -26.37516 -25.14609 -22.00049 -21.38186 -19.16759 -17.88057 -17.58066 -16.64411 -16.43743 -15.10649 -15.05879 -14.79442 -14.34515 -13.89902 -13.57166 -12.93368 -12.74501 -12.51416 -12.06500 -11.74619 -11.65718 -11.11206 -10.78839 -10.72744 -10.29613 -10.12862 -9.92313 -9.80395 -9.54755 -9.12382 -8.57207 -7.55143 -7.28714 -6.89589 -4.69580 1.65829 2.27580 2.46026 2.85861 2.88287 3.03921 3.09851 3.23660 3.78162 4.18848 4.37203 4.95201 5.29228 5.41016 5.65982 5.67533 5.78502 5.88664 6.32941 6.41542 6.62809 6.73048 6.79970 6.97504 7.24509 7.39642 7.44786 7.65034 7.71570 8.00169 8.16672 8.44759 8.73331 9.70062 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027636 B = 0.008414 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.924274 B = 3327.098940 C = 4156.393080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.080 3.920 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.240 1.240 6 H -0.287 1.287 7 C -0.402 4.402 8 H 0.105 0.895 9 C 0.085 3.915 10 C -0.233 4.233 11 C -0.051 4.051 12 S 0.004 5.996 13 C -0.229 4.229 14 C -0.055 4.055 15 C 0.137 3.863 16 O -0.571 6.571 17 C -0.195 4.195 18 C -0.071 4.071 19 C 0.030 3.970 20 O -0.493 6.493 21 H 0.293 0.707 22 H 0.108 0.892 23 H 0.155 0.845 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.376 0.624 27 H 0.106 0.894 28 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -0.613 -0.589 10.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.163 1.163 6 H -0.214 1.214 7 C -0.429 4.429 8 H 0.123 0.877 9 C 0.078 3.922 10 C -0.260 4.260 11 C -0.166 4.166 12 S 0.266 5.734 13 C -0.362 4.362 14 C -0.067 4.067 15 C 0.057 3.943 16 O -0.376 6.376 17 C -0.201 4.201 18 C -0.092 4.092 19 C -0.015 4.015 20 O -0.301 6.301 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.173 0.827 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.222 0.778 27 H 0.124 0.876 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.079 0.898 1.038 9.182 hybrid contribution 0.922 -0.648 -1.398 1.795 sum 10.001 0.250 -0.360 10.010 Atomic orbital electron populations 1.69718 1.08275 1.31213 1.30772 1.26389 0.94890 1.02365 0.90662 0.86236 0.81337 0.79020 0.79436 1.19110 1.16314 1.21437 1.19583 0.93100 0.96603 1.33574 0.87743 1.17801 0.93191 0.90346 0.90874 1.20026 0.93024 1.05885 1.07037 1.22110 0.97334 0.97458 0.99701 1.83752 1.03310 1.34965 1.51385 1.24311 1.00818 1.02255 1.08843 1.18266 0.93072 0.96851 0.98532 1.20620 0.82814 0.95784 0.95081 1.86469 1.20548 1.58253 1.72302 1.17165 0.92123 1.01670 1.09099 1.20411 0.94295 0.96762 0.97761 1.17836 0.90846 0.94513 0.98329 1.84795 1.85199 1.41722 1.18390 0.89664 0.87432 0.82727 0.92587 0.92646 0.77784 0.87603 0.77846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.38 13.93 55.55 0.77 -18.60 15 2 C 0.08 1.98 5.40 -17.33 -0.09 1.89 15 3 Si 0.91 20.06 24.45 -169.99 -4.16 15.90 15 4 H -0.27 -5.80 6.65 56.52 0.38 -5.42 15 5 H -0.24 -5.44 6.83 56.52 0.39 -5.05 15 6 H -0.29 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.40 -10.27 9.21 -37.97 -0.35 -10.62 15 8 H 0.10 2.81 7.82 -52.49 -0.41 2.40 15 9 C 0.08 2.09 5.20 -106.78 -0.55 1.53 15 10 C -0.23 -5.70 7.20 -38.59 -0.28 -5.98 15 11 C -0.05 -1.18 6.46 -38.56 -0.25 -1.43 15 12 S 0.00 0.08 23.29 -107.50 -2.50 -2.43 15 13 C -0.23 -4.40 10.31 28.81 0.30 -4.10 15 14 C -0.06 -1.07 5.82 -105.68 -0.61 -1.69 15 15 C 0.14 2.04 7.05 36.00 0.25 2.29 15 16 O -0.57 -7.67 12.45 -35.23 -0.44 -8.11 15 17 C -0.19 -4.23 5.87 -106.84 -0.63 -4.86 15 18 C -0.07 -1.49 9.59 -39.10 -0.38 -1.87 15 19 C 0.03 0.68 6.65 -39.14 -0.26 0.42 15 20 O -0.49 -10.05 12.77 -19.21 -0.25 -10.30 15 21 H 0.29 6.53 8.30 -40.82 -0.34 6.19 15 22 H 0.11 2.64 4.29 -52.49 -0.23 2.41 15 23 H 0.16 2.72 7.39 -52.48 -0.39 2.33 15 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.38 2.92 9.12 45.56 0.42 3.34 15 27 H 0.11 1.88 7.89 -52.48 -0.41 1.47 15 28 H 0.37 5.79 9.06 45.56 0.41 6.21 15 LS Contribution 256.39 15.07 3.86 3.86 Total: -1.00 -28.93 256.39 -6.19 -35.12 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -0.63 Total: 8.97 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.85 Total: -24.42 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.77 Total: -18.60 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.68 Total: -18.41 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.16 Total: 15.90 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.50 Total: -2.43 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.93 -6.19 -35.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341795.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.063 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds