Wall clock time and date at job start Mon Mar 30 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86796 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47339 * 240.00036 * 3 2 1 5 5 H 1.48503 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47041 * 120.00474 * 3 2 1 7 7 C 1.40115 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.39888 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.37013 * 124.83923 * 180.02562 * 9 7 2 11 11 C 1.39645 * 115.03258 * 179.97438 * 10 9 7 12 12 C 1.40313 * 112.93795 * 0.02562 * 11 10 9 13 13 S 1.75454 * 124.84155 * 359.97438 * 9 7 2 14 14 C 1.39528 * 119.88970 * 179.97438 * 12 11 10 15 15 C 1.50705 * 119.71234 * 180.29642 * 14 12 11 16 16 O 1.42897 * 109.47234 * 179.72107 * 15 14 12 17 17 C 1.37815 * 120.57416 * 0.02562 * 14 12 11 18 18 C 1.38706 * 120.31787 * 0.02562 * 17 14 12 19 19 C 1.37616 * 120.43232 * 359.97438 * 18 17 14 20 20 O 1.35738 * 119.89074 * 179.97438 * 19 18 17 21 21 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 22 22 H 1.08002 * 122.48634 * 359.97438 * 10 9 7 23 23 H 1.09000 * 109.47228 * 299.72281 * 15 14 12 24 24 H 1.09005 * 109.46625 * 59.72539 * 15 14 12 25 25 H 0.96700 * 114.00419 * 179.97438 * 16 15 14 26 26 H 1.07996 * 119.83587 * 180.02562 * 17 14 12 27 27 H 1.08003 * 119.78438 * 179.97438 * 18 17 14 28 28 H 0.96702 * 113.99316 * 90.00346 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6962 1.2125 7 6 2.0086 -1.2135 -0.0005 8 1 3.0887 -1.2135 -0.0001 9 6 1.3092 -2.4249 -0.0005 10 6 1.8916 -3.6651 -0.0005 11 6 0.9976 -4.7378 0.0000 12 6 -0.3452 -4.3306 -0.0001 13 16 -0.4391 -2.5729 0.0007 14 6 -1.3616 -5.2864 -0.0001 15 6 -2.8024 -4.8446 -0.0070 16 8 -3.6528 -5.9930 -0.0123 17 6 -1.0594 -6.6310 0.0005 18 6 0.2623 -7.0517 0.0017 19 6 1.2864 -6.1323 0.0017 20 8 2.5759 -6.5562 0.0034 21 1 -0.4850 0.8400 0.0004 22 1 2.9628 -3.8028 -0.0010 23 1 -3.0036 -4.2476 0.8825 24 1 -2.9946 -4.2461 -0.8976 25 1 -4.5968 -5.7834 -0.0164 26 1 -1.8557 -7.3607 0.0001 27 1 0.4893 -8.1076 0.0026 28 1 2.9503 -6.6798 -0.8795 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396341933.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:49 Heat of formation + Delta-G solvation = -101.340073 kcal Electronic energy + Delta-G solvation = -15426.108327 eV Core-core repulsion = 12724.371903 eV Total energy + Delta-G solvation = -2701.736425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51829 -38.23682 -37.31286 -36.47707 -34.83354 -31.51355 -30.78062 -27.16740 -26.38135 -24.19220 -22.41487 -20.84941 -20.07556 -18.80169 -18.25143 -17.11635 -16.96143 -16.33036 -15.96196 -15.83001 -15.58238 -15.00658 -14.60211 -13.92503 -13.72300 -13.55431 -13.16494 -13.07813 -12.70007 -12.53027 -12.05238 -12.01823 -11.89472 -11.45177 -11.23396 -11.02275 -10.83964 -9.85946 -9.23888 -8.95389 -8.20991 -6.57872 0.19967 0.54239 1.31244 1.33891 1.38139 1.51109 1.82819 1.83410 2.12273 2.76116 3.10359 3.36551 3.60770 4.11151 4.23729 4.40887 4.54118 4.55233 4.87577 4.92023 5.04048 5.27373 5.44722 5.47189 5.65657 5.78721 5.86562 6.03602 6.16899 6.37624 6.52355 6.94325 7.04032 7.92179 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.007583 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.534503 B = 3691.744778 C = 4709.588347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.019 3.981 3 Si 1.014 2.986 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.257 1.257 7 C -0.412 4.412 8 H 0.100 0.900 9 C 0.024 3.976 10 C -0.388 4.388 11 C -0.027 4.027 12 C -0.272 4.272 13 S 0.143 5.857 14 C -0.051 4.051 15 C 0.128 3.872 16 O -0.575 6.575 17 C -0.154 4.154 18 C -0.129 4.129 19 C 0.042 3.958 20 O -0.505 6.505 21 H 0.315 0.685 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.400 0.600 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -1.015 -1.699 4.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.200 4.200 3 Si 0.831 3.169 4 H -0.179 1.179 5 H -0.180 1.180 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.118 0.882 9 C -0.096 4.096 10 C -0.412 4.412 11 C -0.035 4.035 12 C -0.386 4.386 13 S 0.403 5.597 14 C -0.056 4.056 15 C 0.050 3.950 16 O -0.384 6.384 17 C -0.175 4.175 18 C -0.150 4.150 19 C -0.003 4.003 20 O -0.316 6.316 21 H 0.129 0.871 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.250 0.750 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.373 -0.123 -1.085 5.483 hybrid contribution 1.389 -0.241 -0.479 1.489 sum -3.984 -0.364 -1.564 4.296 Atomic orbital electron populations 1.68618 1.09010 1.32891 1.31809 1.27271 0.95927 1.05836 0.90949 0.84725 0.78464 0.73188 0.80490 1.17886 1.17957 1.18082 1.19639 0.96207 0.89468 1.39176 0.88170 1.21802 0.95977 0.96498 0.95281 1.19560 0.97705 0.90584 1.33380 1.18504 0.92733 0.93690 0.98613 1.23503 0.95709 1.02477 1.16953 1.84335 1.04515 0.91781 1.79107 1.19224 0.93207 0.92828 1.00355 1.20694 0.86509 0.87248 1.00515 1.86385 1.21780 1.32407 1.97780 1.20523 0.95622 0.94686 1.06624 1.21120 0.92205 0.99227 1.02415 1.18585 0.84048 0.89478 1.08235 1.84685 1.24688 1.88169 1.34041 0.87142 0.88435 0.92103 0.91932 0.74967 0.84131 0.84142 0.75395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.36 10.58 21.86 0.23 -36.13 15 2 C 0.02 0.87 5.50 85.30 0.47 1.33 15 3 Si 1.01 33.27 29.56 68.60 2.03 35.30 15 4 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 5 H -0.26 -7.68 7.11 99.48 0.71 -6.98 15 6 H -0.26 -8.32 7.11 99.48 0.71 -7.61 15 7 C -0.41 -20.88 9.26 23.13 0.21 -20.66 15 8 H 0.10 4.84 7.85 -2.91 -0.02 4.82 15 9 C 0.02 1.28 6.11 22.38 0.14 1.42 15 10 C -0.39 -21.16 9.98 22.32 0.22 -20.94 15 11 C -0.03 -1.41 5.86 -21.40 -0.13 -1.54 15 12 C -0.27 -13.35 6.31 23.09 0.15 -13.21 15 13 S 0.14 7.09 19.79 -56.49 -1.12 5.97 15 14 C -0.05 -2.19 5.90 -19.65 -0.12 -2.31 15 15 C 0.13 4.31 7.08 71.24 0.50 4.82 15 16 O -0.57 -16.09 12.10 -148.98 -1.80 -17.89 15 17 C -0.15 -6.15 9.36 22.28 0.21 -5.94 15 18 C -0.13 -5.18 9.92 22.23 0.22 -4.95 15 19 C 0.04 1.93 6.78 23.16 0.16 2.09 15 20 O -0.51 -20.73 13.35 -90.62 -1.21 -21.94 15 21 H 0.31 12.54 8.30 -92.71 -0.77 11.77 15 22 H 0.10 5.29 8.06 -2.91 -0.02 5.27 15 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.06 2.02 8.14 -2.38 -0.02 2.00 15 25 H 0.40 6.46 9.12 -74.06 -0.68 5.79 15 26 H 0.14 4.97 6.96 -2.91 -0.02 4.95 15 27 H 0.14 4.66 8.06 -2.91 -0.02 4.63 15 28 H 0.39 12.08 9.06 -74.06 -0.67 11.41 15 Total: -1.00 -64.08 262.46 0.04 -64.04 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.12 Total: 30.55 kcal Atomic # 6 Polarization: -61.93 SS G_CDS: 2.04 Total: -59.90 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.23 Total: -36.13 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -3.01 Total: -39.83 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 2.03 Total: 35.30 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.12 Total: 5.97 kcal Total: -64.08 0.04 -64.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396341933.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.304 kcal (2) G-P(sol) polarization free energy of solvation -64.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds