Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47155 * 270.00250 * 3 2 1 5 5 H 1.48498 * 109.47230 * 30.00035 * 3 2 1 6 6 H 1.48502 * 109.46963 * 150.00249 * 3 2 1 7 7 C 1.39872 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99953 * 162.58712 * 7 2 1 9 9 C 1.40909 * 120.00521 * 342.58086 * 7 2 1 10 10 C 1.40435 * 120.11294 * 334.43158 * 9 7 2 11 11 C 1.37871 * 119.88217 * 180.02562 * 10 9 7 12 12 C 1.37834 * 120.76043 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.54591 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47253 * 359.97438 * 13 12 11 15 15 C 1.41280 * 120.90632 * 359.97438 * 12 11 10 16 16 C 1.45686 * 129.16162 * 180.02562 * 15 12 11 17 17 O 1.36160 * 122.61281 * 359.95706 * 16 15 12 18 18 C 1.32174 * 114.77933 * 179.97438 * 16 15 12 19 19 S 1.75293 * 111.33690 * 0.26885 * 18 16 15 20 20 C 1.39460 * 119.01196 * 0.02562 * 15 12 11 21 21 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.06043 * 0.04543 * 10 9 7 23 23 H 1.07998 * 119.61966 * 179.97438 * 11 10 9 24 24 H 1.08997 * 109.47231 * 120.00186 * 13 12 11 25 25 H 1.09002 * 109.47057 * 240.00190 * 13 12 11 26 26 H 0.96696 * 114.00098 * 180.02562 * 14 13 12 27 27 H 0.96699 * 114.00017 * 269.99849 * 17 16 15 28 28 H 1.07999 * 124.33225 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0082 -1.2114 -0.0005 8 1 3.0512 -1.2327 -0.2805 9 6 1.3522 -2.4039 0.3642 10 6 0.2328 -2.3615 1.2112 11 6 -0.4051 -3.5313 1.5655 12 6 0.0429 -4.7481 1.0981 13 6 -0.6747 -6.0097 1.5032 14 8 -1.7683 -5.6808 2.3622 15 6 1.1657 -4.8287 0.2444 16 6 1.7872 -6.0048 -0.3498 17 8 1.3236 -7.2670 -0.1356 18 6 2.8363 -5.7513 -1.1127 19 16 3.1783 -4.0332 -1.1764 20 6 1.8218 -3.6542 -0.1230 21 1 -0.4850 0.8401 0.0004 22 1 -0.1279 -1.4144 1.5841 23 1 -1.2653 -3.4939 2.2174 24 1 -1.0502 -6.5157 0.6138 25 1 0.0162 -6.6673 2.0308 26 1 -2.2763 -6.4467 2.6630 27 1 1.7194 -7.7069 0.6292 28 1 3.4117 -6.5063 -1.6276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396342702.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -61.657099 kcal Electronic energy + Delta-G solvation = -15686.610750 eV Core-core repulsion = 12986.595109 eV Total energy + Delta-G solvation = -2700.015642 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.84982 -36.96163 -36.06594 -34.01123 -32.39471 -30.43271 -28.22989 -26.63990 -23.68363 -22.33922 -20.52449 -20.09123 -17.88560 -16.87489 -16.45897 -15.88339 -15.11745 -14.64527 -14.60304 -14.21574 -14.03130 -13.20703 -13.00378 -12.22523 -12.11935 -11.84532 -11.35451 -11.26718 -11.11612 -10.77714 -10.57764 -10.30322 -10.07959 -9.66808 -9.65714 -9.37603 -9.15486 -8.13341 -7.36552 -6.96058 -6.66995 -4.46758 1.75505 2.52633 2.63029 2.97833 3.00490 3.05635 3.10328 3.28374 3.82384 4.44522 4.85651 4.87936 5.36358 5.45610 5.87156 6.08842 6.20214 6.31176 6.46012 6.63303 6.80874 6.97072 7.07327 7.27369 7.50184 7.76030 7.81277 7.97367 8.09939 8.21810 8.44078 8.64120 8.71576 10.00800 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.008708 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.604059 B = 3214.698994 C = 4329.225466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.170 4.170 11 C -0.061 4.061 12 C -0.188 4.188 13 C 0.147 3.853 14 O -0.571 6.571 15 C -0.061 4.061 16 C 0.095 3.905 17 O -0.487 6.487 18 C -0.251 4.251 19 S 0.073 5.927 20 C -0.204 4.204 21 H 0.285 0.715 22 H 0.125 0.875 23 H 0.107 0.893 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.367 0.633 27 H 0.376 0.624 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 -6.581 1.735 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.141 3.859 10 C -0.193 4.193 11 C -0.080 4.080 12 C -0.192 4.192 13 C 0.070 3.930 14 O -0.375 6.375 15 C -0.067 4.067 16 C 0.036 3.964 17 O -0.296 6.296 18 C -0.385 4.385 19 S 0.335 5.665 20 C -0.319 4.319 21 H 0.096 0.904 22 H 0.143 0.857 23 H 0.125 0.875 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.212 0.788 27 H 0.230 0.770 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.862 -4.880 0.340 5.668 hybrid contribution -0.659 -0.896 1.032 1.518 sum 2.202 -5.776 1.372 6.332 Atomic orbital electron populations 1.69850 1.07663 1.29791 1.32995 1.25929 0.94779 1.01543 0.92028 0.86251 0.80692 0.80098 0.79492 1.19222 1.19826 1.18191 1.19488 0.98051 0.91125 1.39404 0.90046 1.16990 0.91290 0.89018 0.88643 1.21197 0.99432 0.97200 1.01431 1.20387 0.98034 0.91682 0.97899 1.18678 0.99274 0.93849 1.07395 1.20551 0.86388 0.94836 0.91220 1.86512 1.45748 1.36486 1.68775 1.18628 0.97376 0.90812 0.99898 1.18271 0.94412 0.83828 0.99858 1.84870 1.67618 1.25202 1.51909 1.24975 1.03102 1.01499 1.08927 1.83514 1.32504 0.96791 1.53710 1.22337 1.03373 0.97074 1.09124 0.90393 0.85686 0.87472 0.93915 0.94950 0.78765 0.77016 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.99 55.54 0.61 -18.98 15 2 C 0.08 1.88 5.13 -17.34 -0.09 1.79 15 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.45 -11.69 8.82 -37.96 -0.33 -12.02 15 8 H 0.08 2.04 7.75 -52.48 -0.41 1.63 15 9 C 0.15 3.87 5.59 -106.55 -0.60 3.28 15 10 C -0.17 -4.40 8.67 -38.89 -0.34 -4.74 15 11 C -0.06 -1.48 9.31 -39.86 -0.37 -1.85 15 12 C -0.19 -4.33 5.96 -103.62 -0.62 -4.95 15 13 C 0.15 2.74 6.11 36.00 0.22 2.96 15 14 O -0.57 -9.90 12.07 -35.23 -0.43 -10.33 15 15 C -0.06 -1.41 5.98 -105.31 -0.63 -2.04 15 16 C 0.09 1.91 6.85 -38.54 -0.26 1.64 15 17 O -0.49 -8.17 11.94 -20.25 -0.24 -8.41 15 18 C -0.25 -4.72 10.99 28.81 0.32 -4.40 15 19 S 0.07 1.53 22.83 -107.50 -2.45 -0.92 15 20 C -0.20 -5.06 6.36 -37.62 -0.24 -5.30 15 21 H 0.29 6.47 8.30 -40.82 -0.34 6.13 15 22 H 0.13 3.29 6.19 -52.49 -0.32 2.97 15 23 H 0.11 2.48 6.92 -52.49 -0.36 2.11 15 24 H 0.04 0.79 7.93 -51.93 -0.41 0.38 15 25 H 0.03 0.54 7.93 -51.93 -0.41 0.13 15 26 H 0.37 4.17 9.12 45.56 0.42 4.59 15 27 H 0.38 4.46 9.07 45.56 0.41 4.87 15 28 H 0.15 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 259.77 15.07 3.91 3.91 Total: -1.00 -29.72 259.77 -7.21 -36.93 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -0.65 Total: 10.36 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -2.94 Total: -25.62 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.67 Total: -18.74 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.45 Total: -0.92 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.72 -7.21 -36.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342702.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.727 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds