Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30893 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48503 * 109.47155 * 270.00250 * 3 2 1 5 5 H 1.48498 * 109.47230 * 30.00035 * 3 2 1 6 6 H 1.48502 * 109.46963 * 150.00249 * 3 2 1 7 7 C 1.39872 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99953 * 162.58712 * 7 2 1 9 9 C 1.40909 * 120.00521 * 342.58086 * 7 2 1 10 10 C 1.40435 * 120.11294 * 334.43158 * 9 7 2 11 11 C 1.37871 * 119.88217 * 180.02562 * 10 9 7 12 12 C 1.37834 * 120.76043 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.54591 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47253 * 359.97438 * 13 12 11 15 15 C 1.41280 * 120.90632 * 359.97438 * 12 11 10 16 16 C 1.45686 * 129.16162 * 180.02562 * 15 12 11 17 17 O 1.36160 * 122.61281 * 359.95706 * 16 15 12 18 18 C 1.32174 * 114.77933 * 179.97438 * 16 15 12 19 19 S 1.75293 * 111.33690 * 0.26885 * 18 16 15 20 20 C 1.39460 * 119.01196 * 0.02562 * 15 12 11 21 21 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.06043 * 0.04543 * 10 9 7 23 23 H 1.07998 * 119.61966 * 179.97438 * 11 10 9 24 24 H 1.08997 * 109.47231 * 120.00186 * 13 12 11 25 25 H 1.09002 * 109.47057 * 240.00190 * 13 12 11 26 26 H 0.96696 * 114.00098 * 180.02562 * 14 13 12 27 27 H 0.96699 * 114.00017 * 269.99849 * 17 16 15 28 28 H 1.07999 * 124.33225 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0082 -1.2114 -0.0005 8 1 3.0512 -1.2327 -0.2805 9 6 1.3522 -2.4039 0.3642 10 6 0.2328 -2.3615 1.2112 11 6 -0.4051 -3.5313 1.5655 12 6 0.0429 -4.7481 1.0981 13 6 -0.6747 -6.0097 1.5032 14 8 -1.7683 -5.6808 2.3622 15 6 1.1657 -4.8287 0.2444 16 6 1.7872 -6.0048 -0.3498 17 8 1.3236 -7.2670 -0.1356 18 6 2.8363 -5.7513 -1.1127 19 16 3.1783 -4.0332 -1.1764 20 6 1.8218 -3.6542 -0.1230 21 1 -0.4850 0.8401 0.0004 22 1 -0.1279 -1.4144 1.5841 23 1 -1.2653 -3.4939 2.2174 24 1 -1.0502 -6.5157 0.6138 25 1 0.0162 -6.6673 2.0308 26 1 -2.2763 -6.4467 2.6630 27 1 1.7194 -7.7069 0.6292 28 1 3.4117 -6.5063 -1.6276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396342702.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -83.503368 kcal Electronic energy + Delta-G solvation = -15687.558076 eV Core-core repulsion = 12986.595109 eV Total energy + Delta-G solvation = -2700.962967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47668 -38.49080 -37.54431 -35.74420 -34.03246 -32.21329 -29.95257 -28.36222 -25.36953 -24.05750 -22.26578 -21.70887 -19.61927 -18.34006 -17.99214 -17.54385 -16.78407 -16.34377 -16.12186 -15.80346 -15.50940 -14.88426 -14.69594 -13.94666 -13.67843 -13.53773 -12.95318 -12.89938 -12.85078 -12.42897 -12.15281 -11.95646 -11.68011 -11.38014 -11.24971 -11.05099 -10.84625 -9.86087 -9.16073 -8.76942 -8.39556 -6.36896 0.11407 0.78612 0.94127 1.33681 1.37243 1.40854 1.51314 1.62750 2.16618 2.63137 3.41971 3.49737 3.58154 3.98520 4.35864 4.53017 4.66232 4.76533 4.78522 4.92621 5.02156 5.20094 5.34924 5.48000 5.67567 5.88401 6.04526 6.16509 6.53839 6.75792 6.81509 6.84623 7.07738 8.22886 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.008708 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.604059 B = 3214.698994 C = 4329.225466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.484 4.484 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.196 4.196 11 C -0.073 4.073 12 C -0.195 4.195 13 C 0.155 3.845 14 O -0.588 6.588 15 C -0.076 4.076 16 C 0.092 3.908 17 O -0.481 6.481 18 C -0.232 4.232 19 S 0.080 5.920 20 C -0.238 4.238 21 H 0.293 0.707 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.395 0.605 27 H 0.401 0.599 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -8.236 1.447 8.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.097 0.903 9 C 0.111 3.889 10 C -0.219 4.219 11 C -0.092 4.092 12 C -0.199 4.199 13 C 0.078 3.922 14 O -0.396 6.396 15 C -0.083 4.083 16 C 0.034 3.966 17 O -0.293 6.293 18 C -0.366 4.366 19 S 0.341 5.659 20 C -0.353 4.353 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.130 0.870 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.244 0.756 27 H 0.259 0.741 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.638 -6.588 0.078 7.526 hybrid contribution -0.953 -0.580 1.135 1.592 sum 2.685 -7.168 1.213 7.749 Atomic orbital electron populations 1.69903 1.09141 1.31098 1.33706 1.26798 0.95483 1.04662 0.90976 0.85178 0.79195 0.75548 0.79749 1.18458 1.18725 1.18014 1.19690 0.98169 0.92181 1.41176 0.90260 1.17310 0.91941 0.90335 0.89297 1.21154 1.00639 0.97269 1.02870 1.20512 0.98275 0.92045 0.98416 1.19249 0.99214 0.95201 1.06244 1.20440 0.87041 0.92640 0.92052 1.86446 1.45842 1.38771 1.68549 1.19143 0.97387 0.92022 0.99789 1.18018 0.94382 0.84169 1.00006 1.84824 1.67822 1.23312 1.53345 1.25321 1.02662 1.00716 1.07941 1.83383 1.30981 0.98786 1.52770 1.22716 1.05170 0.97211 1.10186 0.89652 0.87362 0.87049 0.93383 0.92132 0.75578 0.74116 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.52 10.99 21.82 0.24 -42.28 15 2 C 0.04 1.88 5.13 85.23 0.44 2.32 15 3 Si 0.98 37.67 29.59 68.60 2.03 39.70 15 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 5 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 7 C -0.48 -25.98 8.82 23.32 0.21 -25.78 15 8 H 0.08 4.12 7.75 -2.90 -0.02 4.09 15 9 C 0.12 6.43 5.59 -21.11 -0.12 6.31 15 10 C -0.20 -10.72 8.67 22.72 0.20 -10.53 15 11 C -0.07 -3.65 9.31 22.09 0.21 -3.45 15 12 C -0.20 -8.90 5.96 -19.21 -0.11 -9.02 15 13 C 0.16 5.42 6.11 71.23 0.44 5.85 15 14 O -0.59 -19.14 12.07 -148.98 -1.80 -20.94 15 15 C -0.08 -3.50 5.98 -20.31 -0.12 -3.62 15 16 C 0.09 3.45 6.85 23.19 0.16 3.60 15 17 O -0.48 -14.12 11.94 -95.38 -1.14 -15.25 15 18 C -0.23 -7.99 10.99 66.81 0.73 -7.26 15 19 S 0.08 3.26 22.83 -56.49 -1.29 1.97 15 20 C -0.24 -11.94 6.36 23.54 0.15 -11.79 15 21 H 0.29 13.71 8.30 -92.71 -0.77 12.94 15 22 H 0.11 6.10 6.19 -2.91 -0.02 6.08 15 23 H 0.11 5.29 6.92 -2.91 -0.02 5.27 15 24 H 0.05 1.64 7.93 -2.39 -0.02 1.62 15 25 H 0.06 1.78 7.93 -2.39 -0.02 1.76 15 26 H 0.39 7.80 9.12 -74.06 -0.68 7.13 15 27 H 0.40 7.58 9.07 -74.06 -0.67 6.90 15 28 H 0.19 5.06 8.06 -2.91 -0.02 5.03 15 Total: -1.00 -66.05 259.77 0.10 -65.95 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.12 Total: 24.20 kcal Atomic # 6 Polarization: -55.52 SS G_CDS: 2.17 Total: -53.35 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.24 Total: -42.28 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.94 Total: -36.19 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.29 Total: 1.97 kcal Total: -66.05 0.10 -65.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396342702.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.549 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds