Wall clock time and date at job start Mon Mar 30 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31092 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46903 * 300.00075 * 3 2 1 6 6 H 1.48492 * 109.46897 * 60.00548 * 3 2 1 7 7 C 1.39686 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99991 * 195.79507 * 7 2 1 9 9 C 1.40815 * 119.99738 * 15.79785 * 7 2 1 10 10 C 1.36471 * 123.29915 * 229.28910 * 9 7 2 11 11 C 1.50700 * 124.03418 * 359.97438 * 10 9 7 12 12 O 1.42908 * 109.46939 * 84.67215 * 11 10 9 13 13 S 1.69980 * 111.93477 * 180.02562 * 10 9 7 14 14 C 1.75793 * 93.22449 * 359.97438 * 13 10 9 15 15 C 1.39901 * 130.16886 * 179.97438 * 14 13 10 16 16 C 1.37657 * 120.48940 * 180.02562 * 15 14 13 17 17 C 1.38541 * 120.25265 * 0.02562 * 16 15 14 18 18 C 1.38020 * 120.19743 * 0.18391 * 17 16 15 19 19 O 1.35825 * 119.90776 * 179.73648 * 18 17 16 20 20 C 1.39274 * 110.18149 * 0.02562 * 14 13 10 21 21 H 0.97002 * 119.99748 * 4.44719 * 1 2 3 22 22 H 1.09000 * 109.47540 * 204.67307 * 11 10 9 23 23 H 1.08995 * 109.47341 * 324.67436 * 11 10 9 24 24 H 0.96701 * 113.99811 * 179.97438 * 12 11 10 25 25 H 1.07993 * 119.75604 * 0.02562 * 15 14 13 26 26 H 1.08000 * 119.87195 * 180.02562 * 16 15 14 27 27 H 1.08003 * 119.90726 * 180.02562 * 17 16 15 28 28 H 0.96697 * 113.99672 * 269.86638 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 3.7050 1.3464 -0.0006 5 1 1.8862 2.3964 -1.2125 6 1 1.8863 2.3963 1.2125 7 6 2.0093 -1.2097 -0.0005 8 1 3.0587 -1.2275 0.2540 9 6 1.3451 -2.4060 -0.3331 10 6 1.4199 -3.5397 0.4230 11 6 2.2164 -3.6526 1.6973 12 8 1.4346 -3.1702 2.7920 13 16 0.5086 -4.8096 -0.2449 14 6 -0.0277 -3.8395 -1.6093 15 6 -0.8584 -4.1749 -2.6840 16 6 -1.1517 -3.2458 -3.6564 17 6 -0.6256 -1.9664 -3.5808 18 6 0.1995 -1.6160 -2.5314 19 8 0.7163 -0.3616 -2.4659 20 6 0.5056 -2.5557 -1.5253 21 1 -0.4850 0.8376 -0.0651 22 1 2.4790 -4.6962 1.8704 23 1 3.1261 -3.0585 1.6110 24 1 1.8854 -3.2134 3.6464 25 1 -1.2725 -5.1700 -2.7511 26 1 -1.7944 -3.5153 -4.4815 27 1 -0.8598 -1.2417 -4.3467 28 1 1.5701 -0.2644 -2.9094 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:25 Heat of formation + Delta-G solvation = -51.125743 kcal Electronic energy + Delta-G solvation = -16164.584622 eV Core-core repulsion = 13465.025654 eV Total energy + Delta-G solvation = -2699.558968 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.93017 -36.19955 -35.67931 -34.44516 -32.18166 -29.41201 -28.53742 -26.62924 -24.18612 -22.12159 -20.94932 -19.32429 -17.70773 -16.53265 -16.39581 -15.67824 -15.10495 -14.67586 -14.62066 -14.07879 -13.59982 -13.05777 -12.60284 -12.40897 -12.07518 -11.58106 -11.38784 -11.27764 -10.91756 -10.83726 -10.45573 -10.09840 -9.87189 -9.73273 -9.29071 -9.01729 -8.65327 -8.13700 -7.39336 -6.64654 -6.29929 -4.26543 1.82807 2.02472 2.78861 3.07702 3.20386 3.23309 3.54008 3.70045 4.15722 4.52437 5.15766 5.20476 5.54912 5.60148 5.79584 5.90857 6.07683 6.18465 6.44036 6.52173 6.66603 6.83181 7.03270 7.17312 7.26248 7.40114 7.61457 8.01166 8.38885 8.57910 8.65041 8.78097 9.05682 10.51074 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.013781 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.377882 B = 2031.367906 C = 3382.307832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.111 3.889 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.475 4.475 8 H 0.076 0.924 9 C 0.162 3.838 10 C -0.380 4.380 11 C 0.193 3.807 12 O -0.562 6.562 13 S 0.052 5.948 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.184 4.184 18 C 0.184 3.816 19 O -0.471 6.471 20 C -0.073 4.073 21 H 0.276 0.724 22 H 0.021 0.979 23 H 0.045 0.955 24 H 0.354 0.646 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -3.343 -4.023 5.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.108 4.108 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.507 4.507 8 H 0.094 0.906 9 C 0.152 3.848 10 C -0.496 4.496 11 C 0.114 3.886 12 O -0.365 6.365 13 S 0.316 5.684 14 C -0.239 4.239 15 C -0.141 4.141 16 C -0.125 4.125 17 C -0.206 4.206 18 C 0.137 3.863 19 O -0.279 6.279 20 C -0.083 4.083 21 H 0.087 0.913 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.198 0.802 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.637 -4.454 -3.571 5.744 hybrid contribution 1.319 2.211 -0.223 2.584 sum 1.956 -2.243 -3.795 4.823 Atomic orbital electron populations 1.69817 1.07443 1.29001 1.34143 1.25378 0.94315 0.99563 0.91550 0.86490 0.80436 0.82516 0.78304 1.19134 1.19727 1.20688 1.18671 0.96690 0.90403 1.44968 0.90607 1.17156 0.88006 0.92539 0.87136 1.22435 1.21928 1.01098 1.04136 1.19793 0.91476 0.94149 0.83172 1.86817 1.44862 1.87721 1.17083 1.81669 1.51378 1.16152 1.19226 1.22565 1.03050 0.98249 1.00025 1.20282 1.00304 0.99298 0.94218 1.20543 1.00428 0.93090 0.98481 1.21005 1.03263 0.96974 0.99391 1.18169 0.93874 0.82988 0.91266 1.84920 1.38641 1.25402 1.78927 1.20022 0.99744 0.91488 0.97076 0.91341 0.96112 0.93647 0.80206 0.86971 0.86520 0.86497 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.37 11.39 55.54 0.63 -20.74 15 2 C 0.11 2.86 3.18 -17.33 -0.06 2.80 15 3 Si 0.90 19.33 29.45 -169.99 -5.01 14.32 15 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.47 -12.57 7.96 -38.07 -0.30 -12.87 15 8 H 0.08 1.97 7.60 -52.49 -0.40 1.57 15 9 C 0.16 4.30 5.19 -106.20 -0.55 3.74 15 10 C -0.38 -9.54 5.93 -34.95 -0.21 -9.75 15 11 C 0.19 4.25 7.05 36.01 0.25 4.50 15 12 O -0.56 -12.59 13.64 -35.23 -0.48 -13.07 15 13 S 0.05 1.16 22.89 -107.50 -2.46 -1.30 15 14 C -0.12 -2.84 6.44 -38.57 -0.25 -3.09 15 15 C -0.12 -2.28 10.06 -39.17 -0.39 -2.68 15 16 C -0.10 -1.87 10.02 -39.68 -0.40 -2.27 15 17 C -0.18 -3.57 9.95 -39.55 -0.39 -3.96 15 18 C 0.18 4.15 6.28 -38.60 -0.24 3.91 15 19 O -0.47 -10.26 9.26 -19.19 -0.18 -10.44 15 20 C -0.07 -1.83 5.58 -105.09 -0.59 -2.42 15 21 H 0.28 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.05 0.98 7.50 -51.93 -0.39 0.59 15 24 H 0.35 5.67 9.12 45.56 0.42 6.08 15 25 H 0.11 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.12 1.65 8.06 -52.49 -0.42 1.22 15 27 H 0.12 1.96 8.06 -52.48 -0.42 1.53 15 28 H 0.37 6.53 9.06 45.56 0.41 6.95 15 LS Contribution 259.50 15.07 3.91 3.91 Total: -1.00 -32.02 259.50 -7.49 -39.51 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.79 Total: 9.87 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -3.13 Total: -22.07 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.63 Total: -20.74 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.66 Total: -23.51 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.01 Total: 14.32 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.46 Total: -1.30 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.02 -7.49 -39.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.616 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds