Wall clock time and date at job start Mon Mar 30 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86800 * 120.00207 * 2 1 4 4 H 1.48501 * 109.47152 * 269.99767 * 3 2 1 5 5 H 1.48501 * 109.46824 * 29.99511 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99476 * 3 2 1 7 7 C 1.40119 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99472 * 180.02562 * 7 2 1 9 9 C 1.39873 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.36988 * 124.82427 * 180.30051 * 9 7 2 11 11 C 1.39709 * 115.04485 * 180.16805 * 10 9 7 12 12 C 1.42035 * 128.45169 * 179.81279 * 11 10 9 13 13 C 1.35754 * 120.55948 * 179.72272 * 12 11 10 14 14 C 1.39550 * 120.58363 * 359.97438 * 13 12 11 15 15 O 1.35788 * 119.95298 * 180.02562 * 14 13 12 16 16 C 1.38276 * 120.09976 * 359.97438 * 14 13 12 17 17 C 1.50699 * 119.87556 * 180.02562 * 16 14 13 18 18 O 1.42899 * 109.47202 * 89.99675 * 17 16 14 19 19 C 1.39452 * 120.24578 * 0.02562 * 16 14 13 20 20 S 1.75449 * 124.82713 * 359.97438 * 9 7 2 21 21 H 0.97005 * 119.99710 * 0.02562 * 1 2 3 22 22 H 1.07996 * 122.47651 * 0.02562 * 10 9 7 23 23 H 1.08003 * 119.71542 * 359.70155 * 12 11 10 24 24 H 1.08002 * 119.71191 * 180.02562 * 13 12 11 25 25 H 0.96695 * 114.00615 * 89.98806 * 15 14 13 26 26 H 1.08998 * 109.47234 * 209.99636 * 17 16 14 27 27 H 1.09003 * 109.47311 * 329.99977 * 17 16 14 28 28 H 0.96705 * 113.99754 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4395 2.6526 0.6999 6 1 3.5396 1.4401 0.7001 7 6 2.0086 -1.2135 0.0005 8 1 3.0887 -1.2135 0.0010 9 6 1.3092 -2.4248 0.0005 10 6 1.8919 -3.6646 0.0069 11 6 0.9980 -4.7382 0.0019 12 6 1.2876 -6.1287 0.0027 13 6 0.2840 -7.0428 0.0028 14 6 -1.0499 -6.6327 0.0027 15 8 -2.0437 -7.5581 0.0033 16 6 -1.3612 -5.2855 0.0030 17 6 -2.8034 -4.8483 0.0034 18 8 -3.2589 -4.7103 1.3508 19 6 -0.3456 -4.3299 0.0029 20 16 -0.4391 -2.5724 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 2.9631 -3.8019 0.0130 23 1 2.3151 -6.4616 0.0028 24 1 0.5198 -8.0968 0.0038 25 1 -2.3314 -7.8258 0.8868 26 1 -2.8930 -3.8910 -0.5102 27 1 -3.4095 -5.5945 -0.5104 28 1 -4.1813 -4.4303 1.4274 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343937.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:02 Heat of formation + Delta-G solvation = -99.992951 kcal Electronic energy + Delta-G solvation = -15499.550166 eV Core-core repulsion = 12797.872157 eV Total energy + Delta-G solvation = -2701.678009 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60222 -38.12676 -37.53795 -36.44474 -34.26844 -32.39980 -30.40785 -26.87573 -26.79652 -24.02578 -22.44897 -20.94146 -19.70163 -19.14512 -18.37693 -17.45683 -16.90352 -16.58496 -15.99304 -15.61546 -15.02005 -14.75848 -14.49727 -14.19937 -13.85430 -13.61191 -13.23702 -13.05857 -12.88907 -12.32247 -12.25248 -11.95468 -11.90154 -11.35722 -11.00549 -10.97132 -10.79801 -10.22340 -9.11915 -8.93313 -8.29302 -6.56003 0.15792 0.58426 1.25538 1.34405 1.38469 1.53521 1.77634 1.87507 2.12955 2.73184 3.13913 3.55542 3.65497 4.08797 4.11941 4.32887 4.48440 4.63869 4.88288 4.89641 5.01226 5.27755 5.34019 5.45617 5.67089 5.69014 5.89906 6.01581 6.14862 6.42382 6.52996 6.90212 7.02159 7.93523 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.007017 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.926119 B = 3989.430127 C = 4682.475503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.017 3.983 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.254 1.254 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.021 3.979 10 C -0.392 4.392 11 C -0.018 4.018 12 C -0.142 4.142 13 C -0.126 4.126 14 C 0.042 3.958 15 O -0.496 6.496 16 C -0.072 4.072 17 C 0.129 3.871 18 O -0.578 6.578 19 C -0.263 4.263 20 S 0.137 5.863 21 H 0.313 0.687 22 H 0.106 0.894 23 H 0.127 0.873 24 H 0.146 0.854 25 H 0.394 0.606 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -2.216 0.777 4.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.202 4.202 3 Si 0.833 3.167 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.445 4.445 8 H 0.122 0.878 9 C -0.098 4.098 10 C -0.417 4.417 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.004 4.004 15 O -0.306 6.306 16 C -0.077 4.077 17 C 0.052 3.948 18 O -0.387 6.387 19 C -0.377 4.377 20 S 0.397 5.603 21 H 0.127 0.873 22 H 0.124 0.876 23 H 0.145 0.855 24 H 0.163 0.837 25 H 0.250 0.750 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.672 -1.183 0.293 4.828 hybrid contribution 1.028 -0.354 0.337 1.138 sum -3.644 -1.538 0.629 4.005 Atomic orbital electron populations 1.68664 1.09155 1.32733 1.32001 1.27322 0.95887 1.06016 0.90988 0.84664 0.78674 0.73308 0.80094 1.17988 1.18235 1.17700 1.19682 0.96280 0.89383 1.39111 0.87844 1.21860 0.95841 0.96779 0.95340 1.19732 0.98001 0.90621 1.33302 1.18366 0.92087 0.94487 0.97592 1.20740 0.99453 0.90610 1.05360 1.20860 0.91505 1.00169 1.02097 1.17846 0.87620 0.86497 1.08455 1.84687 1.53238 1.58361 1.34343 1.19359 0.93853 0.92074 1.02461 1.20752 0.90886 0.99210 0.83989 1.86527 1.34193 1.91787 1.26158 1.23658 0.96346 1.02291 1.15450 1.84518 1.04700 0.92274 1.78830 0.87306 0.87586 0.85460 0.83661 0.75012 0.93901 0.90693 0.75487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.51 10.58 21.86 0.23 -37.28 15 2 C 0.02 0.76 5.50 85.30 0.47 1.23 15 3 Si 1.01 33.66 29.56 68.60 2.03 35.68 15 4 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 5 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 6 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 7 C -0.41 -20.91 9.26 23.12 0.21 -20.70 15 8 H 0.10 4.96 7.85 -2.91 -0.02 4.93 15 9 C 0.02 1.15 6.11 22.37 0.14 1.28 15 10 C -0.39 -20.98 10.14 22.33 0.23 -20.76 15 11 C -0.02 -0.90 5.86 -21.45 -0.13 -1.02 15 12 C -0.14 -6.12 10.03 22.64 0.23 -5.89 15 13 C -0.13 -4.84 9.89 22.01 0.22 -4.62 15 14 C 0.04 1.68 6.68 22.60 0.15 1.83 15 15 O -0.50 -16.07 12.50 -91.18 -1.14 -17.21 15 16 C -0.07 -3.19 5.55 -19.56 -0.11 -3.30 15 17 C 0.13 4.71 6.80 71.24 0.48 5.20 15 18 O -0.58 -19.52 13.64 -148.98 -2.03 -21.55 15 19 C -0.26 -13.23 6.30 23.09 0.15 -13.09 15 20 S 0.14 7.06 19.39 -56.49 -1.10 5.96 15 21 H 0.31 12.88 8.30 -92.70 -0.77 12.11 15 22 H 0.11 5.43 8.06 -2.91 -0.02 5.41 15 23 H 0.13 4.82 8.06 -2.91 -0.02 4.79 15 24 H 0.15 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.39 9.33 9.06 -74.06 -0.67 8.66 15 26 H 0.04 1.60 7.57 -2.39 -0.02 1.58 15 27 H 0.08 2.38 7.51 -2.39 -0.02 2.36 15 28 H 0.40 8.55 9.12 -74.05 -0.68 7.87 15 Total: -1.00 -64.23 262.68 -0.10 -64.33 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.12 Total: 29.90 kcal Atomic # 6 Polarization: -61.87 SS G_CDS: 2.04 Total: -59.83 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.23 Total: -37.28 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -3.17 Total: -38.77 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.68 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -1.10 Total: 5.96 kcal Total: -64.23 -0.10 -64.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343937.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds