Wall clock time and date at job start Mon Mar 30 2020 06:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48501 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47057 * 299.99417 * 3 2 1 6 6 H 1.48496 * 109.47465 * 59.99881 * 3 2 1 7 7 C 1.39697 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99647 * 191.09853 * 7 2 1 9 9 C 1.40798 * 120.00010 * 11.10196 * 7 2 1 10 10 C 1.36442 * 123.29913 * 22.42013 * 9 7 2 11 11 S 1.69967 * 111.96327 * 180.23085 * 10 9 7 12 12 C 1.75800 * 93.23413 * 359.69228 * 11 10 9 13 13 C 1.39770 * 130.14649 * 180.02562 * 12 11 10 14 14 C 1.38117 * 120.32285 * 180.29564 * 13 12 11 15 15 O 1.35896 * 119.96396 * 179.97438 * 14 13 12 16 16 C 1.39145 * 120.06693 * 0.02562 * 14 13 12 17 17 C 1.50707 * 119.89161 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.46849 * 180.02562 * 17 16 14 19 19 C 1.37310 * 120.21439 * 0.02562 * 16 14 13 20 20 C 1.39369 * 110.18019 * 0.30501 * 12 11 10 21 21 H 0.97006 * 119.99996 * 359.97438 * 1 2 3 22 22 H 1.08007 * 124.01908 * 359.96168 * 10 9 7 23 23 H 1.07995 * 119.83879 * 0.29885 * 13 12 11 24 24 H 0.96698 * 114.00323 * 270.02465 * 15 14 13 25 25 H 1.09001 * 109.46839 * 300.02223 * 17 16 14 26 26 H 1.08996 * 109.47140 * 60.02357 * 17 16 14 27 27 H 0.96704 * 113.99961 * 180.02562 * 18 17 16 28 28 H 1.08000 * 119.80617 * 179.97438 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 3.7048 1.3464 -0.0006 5 1 1.8861 2.3964 -1.2126 6 1 1.8861 2.3965 1.2124 7 6 2.0093 -1.2098 0.0005 8 1 3.0742 -1.2185 0.1806 9 6 1.3250 -2.4179 -0.2337 10 6 0.1291 -2.4869 -0.8869 11 16 -0.4402 -4.0841 -1.0038 12 6 0.9529 -4.7478 -0.1615 13 6 1.2610 -6.0708 0.1673 14 6 2.4260 -6.3672 0.8475 15 8 2.7181 -7.6561 1.1639 16 6 3.3004 -5.3472 1.2098 17 6 4.5702 -5.6750 1.9524 18 8 5.2952 -4.4710 2.2107 19 6 3.0095 -4.0430 0.8940 20 6 1.8280 -3.7252 0.2005 21 1 -0.4850 0.8401 0.0004 22 1 -0.3957 -1.6281 -1.2790 23 1 0.5848 -6.8653 -0.1118 24 1 2.3770 -7.9369 2.0241 25 1 4.3239 -6.1605 2.8967 26 1 5.1819 -6.3449 1.3481 27 1 6.1260 -4.6065 2.6866 28 1 3.6927 -3.2565 1.1788 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:09 Heat of formation + Delta-G solvation = -63.796742 kcal Electronic energy + Delta-G solvation = -15500.478525 eV Core-core repulsion = 12800.370102 eV Total energy + Delta-G solvation = -2700.108424 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38460 -36.80918 -36.56824 -34.33606 -32.00856 -30.61367 -27.81099 -26.48427 -25.01127 -22.03667 -21.42303 -19.31721 -18.24870 -17.13352 -16.47526 -16.21029 -15.18512 -14.90117 -14.61544 -14.31778 -14.13788 -13.23521 -12.98965 -12.43269 -12.24731 -11.88810 -11.44586 -11.29702 -11.08780 -10.85117 -10.51654 -10.39785 -10.20347 -9.77416 -9.65553 -9.34725 -9.12842 -8.48169 -7.28991 -6.71191 -6.61067 -4.28611 1.70045 1.91610 2.80584 2.97542 3.11735 3.17695 3.63377 3.81749 4.02174 4.33183 4.41294 4.67514 5.30388 5.33687 5.47424 5.56280 5.68543 6.09690 6.20727 6.41518 6.57589 6.80071 7.06679 7.08022 7.22288 7.38549 7.72713 7.81135 7.98788 8.04441 8.50393 8.80742 8.91820 10.31583 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.008270 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.484134 B = 3384.757366 C = 4605.650684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.067 3.933 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.432 4.432 8 H 0.077 0.923 9 C 0.078 3.922 10 C -0.351 4.351 11 S 0.042 5.958 12 C -0.132 4.132 13 C -0.118 4.118 14 C 0.096 3.904 15 O -0.499 6.499 16 C -0.147 4.147 17 C 0.135 3.865 18 O -0.566 6.566 19 C -0.033 4.033 20 C -0.068 4.068 21 H 0.276 0.724 22 H 0.164 0.836 23 H 0.120 0.880 24 H 0.379 0.621 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.376 0.624 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -8.145 3.824 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.095 0.905 9 C 0.070 3.930 10 C -0.487 4.487 11 S 0.305 5.695 12 C -0.247 4.247 13 C -0.143 4.143 14 C 0.049 3.951 15 O -0.308 6.308 16 C -0.152 4.152 17 C 0.058 3.942 18 O -0.371 6.371 19 C -0.053 4.053 20 C -0.079 4.079 21 H 0.087 0.913 22 H 0.181 0.819 23 H 0.138 0.862 24 H 0.233 0.767 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.222 0.778 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.081 -8.205 2.285 9.057 hybrid contribution 1.702 1.188 1.415 2.512 sum 4.783 -7.016 3.700 9.262 Atomic orbital electron populations 1.69865 1.07282 1.28388 1.37378 1.25778 0.94849 1.01022 0.93140 0.86181 0.80742 0.80963 0.78359 1.18487 1.19950 1.20112 1.18997 0.95604 0.89728 1.42152 0.90528 1.17332 0.92918 0.89848 0.92914 1.24403 1.07086 0.96802 1.20400 1.81878 1.22519 1.03058 1.62025 1.22561 1.00629 0.95973 1.05578 1.20426 0.96761 0.94263 1.02800 1.17658 0.93759 0.82421 1.01248 1.84806 1.79525 1.25497 1.40979 1.19506 0.97236 0.93466 1.04943 1.20567 0.90649 0.85907 0.97103 1.86542 1.38263 1.32101 1.80167 1.20601 0.94876 0.95155 0.94679 1.19849 0.94657 0.94129 0.99226 0.91315 0.81884 0.86208 0.76702 0.93360 0.92743 0.77780 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.35 10.79 55.54 0.60 -20.75 15 2 C 0.07 1.74 5.36 -17.33 -0.09 1.65 15 3 Si 0.91 19.34 29.57 -169.99 -5.03 14.31 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.06 15 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.43 -11.72 9.07 -38.07 -0.35 -12.06 15 8 H 0.08 2.01 7.69 -52.48 -0.40 1.60 15 9 C 0.08 2.13 5.69 -106.18 -0.60 1.53 15 10 C -0.35 -9.34 9.51 30.08 0.29 -9.05 15 11 S 0.04 0.95 22.96 -107.50 -2.47 -1.52 15 12 C -0.13 -3.00 6.44 -38.59 -0.25 -3.24 15 13 C -0.12 -2.30 10.00 -39.05 -0.39 -2.69 15 14 C 0.10 1.72 6.67 -39.29 -0.26 1.45 15 15 O -0.50 -7.18 12.92 -19.41 -0.25 -7.43 15 16 C -0.15 -2.76 5.88 -104.62 -0.61 -3.37 15 17 C 0.14 1.96 6.90 36.01 0.25 2.21 15 18 O -0.57 -8.25 12.11 -35.23 -0.43 -8.68 15 19 C -0.03 -0.74 9.19 -39.01 -0.36 -1.10 15 20 C -0.07 -1.68 6.03 -105.17 -0.63 -2.31 15 21 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 22 H 0.16 4.57 6.26 -52.48 -0.33 4.24 15 23 H 0.12 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.38 3.55 9.06 45.56 0.41 3.96 15 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.38 3.27 9.12 45.56 0.42 3.69 15 28 H 0.13 2.99 6.78 -52.49 -0.36 2.63 15 LS Contribution 261.95 15.07 3.95 3.95 Total: -1.00 -30.93 261.95 -7.30 -38.24 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -0.66 Total: 8.88 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.02 Total: -27.00 kcal Atomic # 7 Polarization: -21.35 SS G_CDS: 0.60 Total: -20.75 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.68 Total: -16.11 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.47 Total: -1.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.93 -7.30 -38.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.561 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds