Wall clock time and date at job start Mon Mar 30 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30975 * 1 3 3 Si 1.86804 * 119.99730 * 2 1 4 4 H 1.48496 * 109.46754 * 239.99718 * 3 2 1 5 5 H 1.48494 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46644 * 120.00282 * 3 2 1 7 7 C 1.39803 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99655 * 162.36737 * 7 2 1 9 9 C 1.40807 * 119.99955 * 342.36369 * 7 2 1 10 10 C 1.40511 * 120.03946 * 334.36106 * 9 7 2 11 11 C 1.37623 * 119.95133 * 179.97438 * 10 9 7 12 12 C 1.50704 * 119.66698 * 179.97438 * 11 10 9 13 13 O 1.42908 * 109.46600 * 0.02562 * 12 11 10 14 14 C 1.38567 * 120.67132 * 0.27789 * 11 10 9 15 15 O 1.35584 * 119.61848 * 179.70066 * 14 11 10 16 16 C 1.41965 * 120.76220 * 359.44422 * 14 11 10 17 17 C 1.45376 * 129.14197 * 180.22669 * 16 14 11 18 18 C 1.31918 * 114.88060 * 180.30249 * 17 16 14 19 19 S 1.75307 * 111.27749 * 0.02562 * 18 17 16 20 20 C 1.39182 * 118.95341 * 0.54919 * 16 14 11 21 21 H 0.96998 * 120.00279 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.02658 * 359.97438 * 10 9 7 23 23 H 1.08996 * 109.47190 * 240.00532 * 12 11 10 24 24 H 1.09000 * 109.47302 * 119.99935 * 12 11 10 25 25 H 0.96693 * 114.00017 * 299.99966 * 13 12 11 26 26 H 0.96705 * 113.99861 * 90.00262 * 15 14 11 27 27 H 1.08004 * 122.55897 * 0.28363 * 17 16 14 28 28 H 1.08008 * 124.36333 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3097 0.0000 0.0000 3 14 2.2437 1.6178 0.0000 4 1 3.0974 1.6964 -1.2125 5 1 1.2787 2.7464 0.0006 6 1 3.0975 1.6964 1.2125 7 6 2.0087 -1.2107 -0.0005 8 1 3.0506 -1.2325 -0.2839 9 6 1.3543 -2.4017 0.3684 10 6 0.2381 -2.3559 1.2207 11 6 -0.4005 -3.5210 1.5797 12 6 -1.5967 -3.4645 2.4946 13 8 -1.8647 -2.1052 2.8447 14 6 0.0490 -4.7460 1.1134 15 8 -0.5925 -5.8810 1.4855 16 6 1.1703 -4.8259 0.2463 17 6 1.7879 -5.9994 -0.3493 18 6 2.8324 -5.7486 -1.1151 19 16 3.1713 -4.0300 -1.1858 20 6 1.8223 -3.6527 -0.1219 21 1 -0.4850 0.8400 0.0004 22 1 -0.1184 -1.4072 1.5938 23 1 -1.3907 -4.0388 3.3978 24 1 -2.4636 -3.8860 1.9857 25 1 -1.1348 -1.6655 3.3018 26 1 -1.3114 -6.1389 0.8924 27 1 1.4200 -7.0002 -0.1776 28 1 3.4050 -6.5046 -1.6319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344748.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:39 Heat of formation + Delta-G solvation = -63.835203 kcal Electronic energy + Delta-G solvation = -15821.793668 eV Core-core repulsion = 13121.683576 eV Total energy + Delta-G solvation = -2700.110091 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.84362 -36.30974 -35.93756 -34.67295 -32.75982 -29.97216 -28.06993 -25.59590 -24.85710 -22.13790 -20.96850 -19.24153 -17.85532 -17.29086 -16.39944 -15.87238 -15.05380 -14.98834 -14.26886 -14.11339 -13.66533 -13.12445 -12.86309 -12.44105 -12.29639 -11.73867 -11.40731 -11.28616 -11.05032 -10.92961 -10.61735 -10.34883 -10.00215 -9.81017 -9.73478 -9.21725 -9.08689 -8.18323 -7.36859 -7.01380 -6.71647 -4.50490 1.82906 2.43941 2.61685 2.94485 2.97806 3.00961 3.14558 3.38357 3.78326 4.31127 5.04885 5.19847 5.40527 5.46975 5.82259 6.02603 6.05445 6.16677 6.42321 6.60377 6.80398 6.94646 7.03954 7.19035 7.28789 7.55207 7.69871 7.90330 8.21258 8.25394 8.49923 8.57066 8.79414 9.94577 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.011194 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.671721 B = 2500.801058 C = 4022.528418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.155 4.155 11 C -0.113 4.113 12 C 0.133 3.867 13 O -0.566 6.566 14 C -0.012 4.012 15 O -0.496 6.496 16 C -0.064 4.064 17 C -0.115 4.115 18 C -0.217 4.217 19 S 0.044 5.956 20 C -0.200 4.200 21 H 0.287 0.713 22 H 0.138 0.862 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.375 0.625 26 H 0.353 0.647 27 H 0.127 0.873 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 -3.411 0.673 3.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.137 3.863 10 C -0.178 4.178 11 C -0.115 4.115 12 C 0.055 3.945 13 O -0.371 6.371 14 C -0.060 4.060 15 O -0.302 6.302 16 C -0.071 4.071 17 C -0.148 4.148 18 C -0.351 4.351 19 S 0.306 5.694 20 C -0.315 4.315 21 H 0.099 0.901 22 H 0.155 0.845 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.222 0.778 26 H 0.205 0.795 27 H 0.145 0.855 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.484 -2.563 0.066 2.963 hybrid contribution -0.490 -0.204 0.331 0.626 sum 0.994 -2.768 0.397 2.967 Atomic orbital electron populations 1.69873 1.07466 1.30113 1.31937 1.25960 0.94846 1.01561 0.92209 0.86282 0.80187 0.79663 0.80321 1.18728 1.19993 1.18511 1.19475 0.98172 0.91114 1.38768 0.89955 1.16992 0.91180 0.89223 0.88869 1.20835 0.99025 0.96591 1.01320 1.20302 0.97811 0.93119 1.00268 1.20820 0.95454 0.82482 0.95719 1.86457 1.44319 1.25979 1.80343 1.17427 0.97248 0.84342 1.06958 1.84801 1.50396 1.42249 1.52797 1.19146 0.97856 0.91321 0.98804 1.20821 0.96767 0.98257 0.98909 1.24884 1.03437 0.99986 1.06791 1.83549 1.33944 0.98986 1.52893 1.22529 1.03404 0.97063 1.08515 0.90142 0.84505 0.93333 0.89654 0.77755 0.79508 0.85532 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.77 11.00 55.54 0.61 -18.16 15 2 C 0.08 1.78 5.12 -17.33 -0.09 1.69 15 3 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 15 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.45 -11.28 8.80 -38.03 -0.33 -11.62 15 8 H 0.08 2.03 7.75 -52.49 -0.41 1.62 15 9 C 0.14 3.68 5.59 -106.52 -0.60 3.09 15 10 C -0.15 -3.79 7.81 -38.95 -0.30 -4.10 15 11 C -0.11 -2.54 5.87 -104.72 -0.61 -3.16 15 12 C 0.13 2.53 6.86 36.01 0.25 2.78 15 13 O -0.57 -10.87 12.67 -35.23 -0.45 -11.32 15 14 C -0.01 -0.26 6.76 -38.03 -0.26 -0.52 15 15 O -0.50 -9.58 12.75 -18.45 -0.24 -9.82 15 16 C -0.06 -1.48 6.04 -105.28 -0.64 -2.12 15 17 C -0.12 -2.29 10.26 -38.65 -0.40 -2.69 15 18 C -0.22 -4.02 11.03 28.82 0.32 -3.70 15 19 S 0.04 0.92 22.83 -107.50 -2.45 -1.53 15 20 C -0.20 -4.89 6.36 -37.68 -0.24 -5.13 15 21 H 0.29 6.39 8.30 -40.82 -0.34 6.05 15 22 H 0.14 3.35 4.68 -52.49 -0.25 3.11 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.09 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.38 6.24 8.09 45.56 0.37 6.61 15 26 H 0.35 5.34 9.06 45.56 0.41 5.75 15 27 H 0.13 2.20 8.06 -52.48 -0.42 1.78 15 28 H 0.15 2.21 8.06 -52.48 -0.42 1.79 15 LS Contribution 260.93 15.07 3.93 3.93 Total: -1.00 -28.33 260.93 -7.22 -35.55 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.70 Total: 14.18 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -2.90 Total: -25.49 kcal Atomic # 7 Polarization: -18.77 SS G_CDS: 0.61 Total: -18.16 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.68 Total: -21.14 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.45 Total: -1.53 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.33 -7.22 -35.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344748.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.286 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds