Wall clock time and date at job start Mon Mar 30 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48499 * 109.46967 * 240.00083 * 3 2 1 5 5 H 1.48503 * 109.46786 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47296 * 119.99893 * 3 2 1 7 7 C 1.40166 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.39957 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.36955 * 124.83839 * 180.02562 * 9 7 2 11 11 C 1.39810 * 115.01951 * 179.97438 * 10 9 7 12 12 C 1.40200 * 112.89449 * 0.02562 * 11 10 9 13 13 S 1.75454 * 124.84134 * 359.97438 * 9 7 2 14 14 C 1.40041 * 119.74805 * 179.97438 * 12 11 10 15 15 O 1.35980 * 119.90165 * 179.97438 * 14 12 11 16 16 C 1.38116 * 120.19659 * 0.02562 * 14 12 11 17 17 C 1.38922 * 120.16740 * 0.02562 * 16 14 12 18 18 C 1.35912 * 120.69750 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.71200 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47279 * 359.97438 * 19 18 17 21 21 H 0.96997 * 119.99830 * 359.97438 * 1 2 3 22 22 H 1.07998 * 122.49285 * 359.71564 * 10 9 7 23 23 H 0.96695 * 113.99927 * 90.00062 * 15 14 12 24 24 H 1.07995 * 119.91929 * 179.97438 * 16 14 12 25 25 H 1.08001 * 119.64974 * 179.97438 * 17 16 14 26 26 H 1.09000 * 109.47183 * 119.99537 * 19 18 17 27 27 H 1.09001 * 109.47004 * 239.99891 * 19 18 17 28 28 H 0.96694 * 114.00415 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0954 1.6964 1.2124 7 6 2.0086 -1.2139 -0.0005 8 1 3.0885 -1.2139 -0.0010 9 6 1.3088 -2.4259 -0.0005 10 6 1.8911 -3.6655 -0.0005 11 6 0.9958 -4.7394 0.0000 12 6 -0.3455 -4.3312 -0.0001 13 16 -0.4395 -2.5740 0.0007 14 6 -1.3642 -5.2921 -0.0001 15 8 -2.6662 -4.8998 0.0003 16 6 -1.0505 -6.6372 0.0005 17 6 0.2778 -7.0442 0.0017 18 6 1.2836 -6.1301 0.0017 19 6 2.7166 -6.5963 0.0025 20 8 2.7528 -8.0249 0.0036 21 1 -0.4850 0.8400 0.0004 22 1 2.9622 -3.8033 -0.0051 23 1 -3.0430 -4.7861 -0.8829 24 1 -1.8396 -7.3744 0.0009 25 1 0.5136 -8.0981 0.0026 26 1 3.2214 -6.2205 -0.8875 27 1 3.2208 -6.2198 0.8925 28 1 3.6458 -8.3958 0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396345366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:06 Heat of formation + Delta-G solvation = -79.994714 kcal Electronic energy + Delta-G solvation = -15419.688092 eV Core-core repulsion = 12718.877272 eV Total energy + Delta-G solvation = -2700.810820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.85870 -36.87739 -35.89339 -34.69542 -32.92978 -29.79273 -29.07517 -25.81746 -24.47975 -22.39399 -20.63524 -19.42531 -18.11665 -16.96431 -16.85380 -15.77794 -15.38872 -14.55962 -14.39399 -14.19696 -13.78249 -13.39946 -13.00379 -12.24283 -12.10729 -11.86886 -11.57780 -11.48631 -11.24340 -10.75068 -10.52256 -10.39947 -10.12996 -9.82923 -9.68958 -9.36331 -9.06816 -8.11943 -7.42497 -7.23255 -6.34171 -4.75700 1.93402 2.36889 2.79035 2.81012 2.85345 3.24385 3.49702 3.53808 3.83205 4.49407 4.68268 4.91404 5.11530 5.70274 5.84631 6.03480 6.09162 6.15873 6.60999 6.62680 6.72873 7.00778 7.17562 7.29125 7.38410 7.43267 7.70078 7.76730 7.90071 8.01130 8.25521 8.34137 8.46202 9.59712 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.007421 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.084785 B = 3772.006329 C = 4773.407668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.052 3.948 3 Si 0.940 3.060 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.381 4.381 8 H 0.099 0.901 9 C 0.053 3.947 10 C -0.367 4.367 11 C 0.039 3.961 12 C -0.293 4.293 13 S 0.158 5.842 14 C 0.163 3.837 15 O -0.504 6.504 16 C -0.225 4.225 17 C -0.070 4.070 18 C -0.141 4.141 19 C 0.133 3.867 20 O -0.574 6.574 21 H 0.303 0.697 22 H 0.106 0.894 23 H 0.378 0.622 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -2.664 -1.615 3.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.170 4.170 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.415 4.415 8 H 0.117 0.883 9 C -0.067 4.067 10 C -0.392 4.392 11 C 0.030 3.970 12 C -0.408 4.408 13 S 0.418 5.582 14 C 0.115 3.885 15 O -0.313 6.313 16 C -0.246 4.246 17 C -0.091 4.091 18 C -0.143 4.143 19 C 0.056 3.944 20 O -0.378 6.378 21 H 0.116 0.884 22 H 0.124 0.876 23 H 0.232 0.768 24 H 0.128 0.872 25 H 0.135 0.865 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.005 -1.401 -0.997 1.720 hybrid contribution 2.046 -0.373 -0.484 2.136 sum 2.052 -1.774 -1.482 3.091 Atomic orbital electron populations 1.68630 1.07809 1.31315 1.32185 1.26344 0.95136 1.03068 0.92415 0.85783 0.79691 0.77783 0.80483 1.18311 1.19656 1.18297 1.19320 0.95697 0.88591 1.37850 0.88321 1.21522 0.95355 0.95846 0.93971 1.19550 0.97628 0.89971 1.32044 1.17590 0.91634 0.91922 0.95820 1.23888 0.95853 1.02707 1.18390 1.84892 1.04341 0.90922 1.78059 1.17706 0.81373 0.90394 0.99030 1.84772 1.23746 1.90234 1.32596 1.20670 0.96339 0.93839 1.13729 1.19955 0.91389 0.98731 0.98986 1.19094 0.93392 0.91858 1.09959 1.20695 0.95124 0.79271 0.99324 1.86446 1.32461 1.21118 1.97826 0.88379 0.87554 0.76765 0.87245 0.86520 0.93324 0.93308 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.93 10.59 55.56 0.59 -17.35 15 2 C 0.05 1.17 5.50 -17.28 -0.10 1.08 15 3 Si 0.94 16.60 29.56 -169.99 -5.03 11.58 15 4 H -0.26 -4.51 7.11 56.52 0.40 -4.11 15 5 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 6 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 7 C -0.38 -9.26 9.27 -38.21 -0.35 -9.62 15 8 H 0.10 2.24 7.85 -52.49 -0.41 1.83 15 9 C 0.05 1.36 6.11 -39.40 -0.24 1.12 15 10 C -0.37 -9.21 9.70 -39.46 -0.38 -9.59 15 11 C 0.04 0.96 5.82 -107.12 -0.62 0.33 15 12 C -0.29 -7.29 6.42 -38.17 -0.25 -7.53 15 13 S 0.16 3.94 20.10 -107.50 -2.16 1.78 15 14 C 0.16 3.69 6.73 -38.95 -0.26 3.43 15 15 O -0.50 -10.15 13.48 -19.68 -0.27 -10.42 15 16 C -0.22 -4.74 9.97 -39.37 -0.39 -5.13 15 17 C -0.07 -1.48 9.29 -40.16 -0.37 -1.86 15 18 C -0.14 -3.12 5.92 -104.01 -0.62 -3.74 15 19 C 0.13 2.41 6.88 36.01 0.25 2.66 15 20 O -0.57 -9.09 12.07 -35.23 -0.43 -9.52 15 21 H 0.30 6.28 8.29 -40.82 -0.34 5.94 15 22 H 0.11 2.50 7.91 -52.49 -0.41 2.09 15 23 H 0.38 5.73 9.06 45.56 0.41 6.15 15 24 H 0.11 2.02 8.06 -52.49 -0.42 1.60 15 25 H 0.12 2.27 6.90 -52.49 -0.36 1.90 15 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.37 3.77 9.12 45.56 0.42 4.18 15 LS Contribution 262.20 15.07 3.95 3.95 Total: -1.00 -29.35 262.20 -7.44 -36.78 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.76 Total: 12.04 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -3.34 Total: -28.85 kcal Atomic # 7 Polarization: -17.93 SS G_CDS: 0.59 Total: -17.35 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.69 Total: -19.93 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.16 Total: 1.78 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.35 -7.44 -36.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.212 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds