Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48499 * 109.46967 * 240.00083 * 3 2 1 5 5 H 1.48503 * 109.46786 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47296 * 119.99893 * 3 2 1 7 7 C 1.40166 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.39957 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.36955 * 124.83839 * 180.02562 * 9 7 2 11 11 C 1.39810 * 115.01951 * 179.97438 * 10 9 7 12 12 C 1.40200 * 112.89449 * 0.02562 * 11 10 9 13 13 S 1.75454 * 124.84134 * 359.97438 * 9 7 2 14 14 C 1.40041 * 119.74805 * 179.97438 * 12 11 10 15 15 O 1.35980 * 119.90165 * 179.97438 * 14 12 11 16 16 C 1.38116 * 120.19659 * 0.02562 * 14 12 11 17 17 C 1.38922 * 120.16740 * 0.02562 * 16 14 12 18 18 C 1.35912 * 120.69750 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.71200 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47279 * 359.97438 * 19 18 17 21 21 H 0.96997 * 119.99830 * 359.97438 * 1 2 3 22 22 H 1.07998 * 122.49285 * 359.71564 * 10 9 7 23 23 H 0.96695 * 113.99927 * 90.00062 * 15 14 12 24 24 H 1.07995 * 119.91929 * 179.97438 * 16 14 12 25 25 H 1.08001 * 119.64974 * 179.97438 * 17 16 14 26 26 H 1.09000 * 109.47183 * 119.99537 * 19 18 17 27 27 H 1.09001 * 109.47004 * 239.99891 * 19 18 17 28 28 H 0.96694 * 114.00415 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0954 1.6964 -1.2125 5 1 1.2766 2.7464 -0.0006 6 1 3.0954 1.6964 1.2124 7 6 2.0086 -1.2139 -0.0005 8 1 3.0885 -1.2139 -0.0010 9 6 1.3088 -2.4259 -0.0005 10 6 1.8911 -3.6655 -0.0005 11 6 0.9958 -4.7394 0.0000 12 6 -0.3455 -4.3312 -0.0001 13 16 -0.4395 -2.5740 0.0007 14 6 -1.3642 -5.2921 -0.0001 15 8 -2.6662 -4.8998 0.0003 16 6 -1.0505 -6.6372 0.0005 17 6 0.2778 -7.0442 0.0017 18 6 1.2836 -6.1301 0.0017 19 6 2.7166 -6.5963 0.0025 20 8 2.7528 -8.0249 0.0036 21 1 -0.4850 0.8400 0.0004 22 1 2.9622 -3.8033 -0.0051 23 1 -3.0430 -4.7861 -0.8829 24 1 -1.8396 -7.3744 0.0009 25 1 0.5136 -8.0981 0.0026 26 1 3.2214 -6.2205 -0.8875 27 1 3.2208 -6.2198 0.8925 28 1 3.6458 -8.3958 0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = -101.033491 kcal Electronic energy + Delta-G solvation = -15420.600402 eV Core-core repulsion = 12718.877272 eV Total energy + Delta-G solvation = -2701.723130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53913 -38.39768 -37.41237 -36.38218 -34.66081 -31.38570 -30.86231 -27.54600 -26.06788 -24.15493 -22.30622 -21.17666 -19.89548 -18.58352 -18.26705 -17.44933 -17.00538 -16.17638 -15.87243 -15.73928 -15.51077 -15.01027 -14.62336 -13.90511 -13.73089 -13.53763 -13.18903 -13.04887 -12.93527 -12.33234 -12.00747 -11.99152 -11.79922 -11.38952 -11.20696 -11.02650 -10.92654 -9.87410 -9.22863 -8.93542 -8.19037 -6.59299 0.20830 0.61470 1.31277 1.35098 1.40685 1.52378 1.82982 1.90080 2.13173 2.77798 3.14970 3.42859 3.48666 4.18237 4.32313 4.49753 4.57180 4.62984 4.87308 4.90210 5.02996 5.33270 5.44181 5.49324 5.67649 5.71915 5.92748 6.03433 6.18454 6.45646 6.51970 6.92472 6.97405 7.92923 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.007421 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.084785 B = 3772.006329 C = 4773.407668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.016 3.984 3 Si 1.015 2.985 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.407 4.407 8 H 0.107 0.893 9 C 0.024 3.976 10 C -0.388 4.388 11 C 0.016 3.984 12 C -0.321 4.321 13 S 0.134 5.866 14 C 0.152 3.848 15 O -0.508 6.508 16 C -0.218 4.218 17 C -0.072 4.072 18 C -0.154 4.154 19 C 0.141 3.859 20 O -0.579 6.579 21 H 0.313 0.687 22 H 0.111 0.889 23 H 0.399 0.601 24 H 0.139 0.861 25 H 0.138 0.862 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -2.964 -1.723 4.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.203 4.203 3 Si 0.832 3.168 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.441 4.441 8 H 0.125 0.875 9 C -0.096 4.096 10 C -0.413 4.413 11 C 0.008 3.992 12 C -0.436 4.436 13 S 0.393 5.607 14 C 0.104 3.896 15 O -0.320 6.320 16 C -0.238 4.238 17 C -0.092 4.092 18 C -0.156 4.156 19 C 0.064 3.936 20 O -0.388 6.388 21 H 0.127 0.873 22 H 0.129 0.871 23 H 0.257 0.743 24 H 0.157 0.843 25 H 0.156 0.844 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.484 -1.742 -1.119 2.126 hybrid contribution 1.829 -0.411 -0.460 1.930 sum 2.313 -2.153 -1.579 3.532 Atomic orbital electron populations 1.68670 1.09237 1.32839 1.31617 1.27345 0.95850 1.06097 0.91027 0.84707 0.78379 0.73041 0.80626 1.17672 1.18443 1.17827 1.19706 0.96359 0.89252 1.38740 0.87542 1.21885 0.95726 0.96872 0.95068 1.19695 0.98017 0.90228 1.33355 1.17873 0.91618 0.93177 0.96503 1.24169 0.96916 1.02650 1.19818 1.84667 1.04736 0.92232 1.79042 1.17875 0.81812 0.90732 0.99222 1.84706 1.22597 1.90187 1.34540 1.21045 0.97320 0.93702 1.11737 1.20276 0.91238 0.99637 0.98085 1.19539 0.96013 0.91026 1.09012 1.20487 0.92688 0.80603 0.99821 1.86360 1.35131 1.19529 1.97780 0.87318 0.87076 0.74326 0.84283 0.84384 0.92671 0.92867 0.75152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.27 10.59 21.87 0.23 -37.04 15 2 C 0.02 0.72 5.50 85.32 0.47 1.19 15 3 Si 1.01 33.08 29.56 68.60 2.03 35.11 15 4 H -0.25 -7.96 7.11 99.48 0.71 -7.26 15 5 H -0.26 -7.94 7.11 99.48 0.71 -7.24 15 6 H -0.25 -8.08 7.11 99.48 0.71 -7.37 15 7 C -0.41 -20.19 9.27 23.16 0.21 -19.98 15 8 H 0.11 4.91 7.85 -2.91 -0.02 4.89 15 9 C 0.02 1.28 6.11 22.39 0.14 1.42 15 10 C -0.39 -20.04 9.70 22.35 0.22 -19.82 15 11 C 0.02 0.82 5.82 -21.48 -0.13 0.70 15 12 C -0.32 -16.18 6.42 23.18 0.15 -16.03 15 13 S 0.13 6.89 20.10 -56.49 -1.14 5.76 15 14 C 0.15 6.79 6.73 22.68 0.15 6.95 15 15 O -0.51 -20.02 13.48 -93.32 -1.26 -21.27 15 16 C -0.22 -8.73 9.97 22.40 0.22 -8.50 15 17 C -0.07 -2.91 9.29 21.89 0.20 -2.71 15 18 C -0.15 -6.69 5.92 -19.47 -0.12 -6.81 15 19 C 0.14 4.91 6.88 71.24 0.49 5.40 15 20 O -0.58 -16.73 12.07 -148.98 -1.80 -18.53 15 21 H 0.31 12.92 8.29 -92.71 -0.77 12.15 15 22 H 0.11 5.38 7.91 -2.91 -0.02 5.36 15 23 H 0.40 11.69 9.06 -74.06 -0.67 11.02 15 24 H 0.14 4.68 8.06 -2.91 -0.02 4.65 15 25 H 0.14 4.94 6.90 -2.91 -0.02 4.92 15 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.40 6.80 9.12 -74.06 -0.68 6.13 15 Total: -1.00 -63.30 262.20 -0.04 -63.34 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.12 Total: 30.85 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 2.02 Total: -58.20 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.23 Total: -37.04 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -3.06 Total: -39.81 kcal Atomic # 14 Polarization: 33.08 SS G_CDS: 2.03 Total: 35.11 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.14 Total: 5.76 kcal Total: -63.30 -0.04 -63.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.698 kcal (2) G-P(sol) polarization free energy of solvation -63.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds