Wall clock time and date at job start Mon Mar 30 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31096 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48503 * 109.47133 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.46744 * 30.00658 * 3 2 1 6 6 H 1.48497 * 109.46731 * 150.00321 * 3 2 1 7 7 C 1.39678 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99742 * 190.66034 * 7 2 1 9 9 C 1.40817 * 120.00155 * 10.66909 * 7 2 1 10 10 C 1.36476 * 123.30319 * 23.38928 * 9 7 2 11 11 S 1.69979 * 111.93243 * 180.21276 * 10 9 7 12 12 C 1.75797 * 93.22367 * 359.69813 * 11 10 9 13 13 C 1.39899 * 130.16286 * 180.02562 * 12 11 10 14 14 C 1.37655 * 120.49035 * 180.26689 * 13 12 11 15 15 C 1.50698 * 119.87376 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47468 * 89.99832 * 15 14 13 17 17 C 1.38545 * 120.24782 * 359.97438 * 14 13 12 18 18 C 1.38018 * 120.19517 * 0.06293 * 17 14 13 19 19 O 1.35836 * 119.89736 * 179.97438 * 18 17 14 20 20 C 1.39263 * 110.18556 * 0.29678 * 12 11 10 21 21 H 0.96999 * 120.00339 * 359.97438 * 1 2 3 22 22 H 1.08001 * 124.03169 * 359.94573 * 10 9 7 23 23 H 1.08000 * 119.75723 * 0.24080 * 13 12 11 24 24 H 1.09004 * 109.47030 * 209.99954 * 15 14 13 25 25 H 1.09002 * 109.47082 * 329.99314 * 15 14 13 26 26 H 0.96694 * 113.99790 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.89967 * 180.02562 * 17 14 13 28 28 H 0.96698 * 113.99794 * 269.94060 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 2.4923 2.0465 -1.4001 5 1 1.4424 2.6526 0.7002 6 1 3.5425 1.4401 0.7000 7 6 2.0093 -1.2097 -0.0005 8 1 3.0753 -1.2178 0.1725 9 6 1.3235 -2.4185 -0.2269 10 6 0.1323 -2.4917 -0.8889 11 16 -0.4394 -4.0891 -0.9925 12 6 0.9456 -4.7458 -0.1318 13 6 1.2491 -6.0668 0.2149 14 6 2.4036 -6.3602 0.9047 15 6 2.7165 -7.7880 1.2715 16 8 3.4725 -8.3949 0.2216 17 6 3.2790 -5.3479 1.2630 18 6 2.9982 -4.0378 0.9315 19 8 3.8605 -3.0500 1.2863 20 6 1.8192 -3.7218 0.2253 21 1 -0.4850 0.8400 0.0004 22 1 -0.3873 -1.6362 -1.2945 23 1 0.5724 -6.8622 -0.0604 24 1 3.2960 -7.8073 2.1945 25 1 1.7867 -8.3384 1.4148 26 1 3.7101 -9.3168 0.3904 27 1 4.1834 -5.5845 1.8038 28 1 3.6790 -2.6621 2.1533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396345997.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:17 Heat of formation + Delta-G solvation = -62.608742 kcal Electronic energy + Delta-G solvation = -15543.105122 eV Core-core repulsion = 12843.048214 eV Total energy + Delta-G solvation = -2700.056908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23549 -36.97219 -35.84656 -34.80982 -32.41468 -29.28951 -28.95304 -26.06349 -25.04924 -22.16325 -21.23268 -19.54487 -17.71015 -17.32472 -16.60364 -16.05583 -15.31968 -15.12239 -14.35534 -14.23897 -13.80527 -13.48813 -12.81872 -12.51701 -12.31145 -11.48779 -11.43339 -11.33045 -11.13234 -10.86697 -10.75741 -10.27792 -9.98071 -9.94254 -9.51689 -9.36711 -9.15275 -8.32491 -7.42678 -6.69148 -6.59445 -4.26405 1.66824 1.88704 2.80634 2.99442 3.12183 3.16216 3.63442 3.79272 4.03007 4.26553 4.63870 4.96035 5.22295 5.30076 5.38693 5.52981 5.64515 5.75437 6.10981 6.42513 6.52848 6.92485 6.98890 7.05629 7.24413 7.37564 7.68927 7.74052 8.01571 8.40620 8.55191 8.83773 8.94273 10.33165 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.007357 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.249578 B = 3805.195064 C = 4615.452381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.429 4.429 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.351 4.351 11 S 0.043 5.957 12 C -0.135 4.135 13 C -0.081 4.081 14 C -0.092 4.092 15 C 0.127 3.873 16 O -0.567 6.567 17 C -0.153 4.153 18 C 0.145 3.855 19 O -0.488 6.488 20 C -0.079 4.079 21 H 0.276 0.724 22 H 0.163 0.837 23 H 0.115 0.885 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.373 0.627 27 H 0.120 0.880 28 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -9.267 4.017 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.462 4.462 8 H 0.107 0.893 9 C 0.073 3.927 10 C -0.487 4.487 11 S 0.306 5.694 12 C -0.251 4.251 13 C -0.104 4.104 14 C -0.095 4.095 15 C 0.050 3.950 16 O -0.372 6.372 17 C -0.176 4.176 18 C 0.099 3.901 19 O -0.298 6.298 20 C -0.090 4.090 21 H 0.086 0.914 22 H 0.180 0.820 23 H 0.133 0.867 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.219 0.781 27 H 0.138 0.862 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.402 -9.103 2.540 9.554 hybrid contribution 1.362 1.168 1.366 2.255 sum 2.763 -7.935 3.906 9.266 Atomic orbital electron populations 1.69876 1.07289 1.28416 1.37637 1.25832 0.94829 1.01056 0.93310 0.86225 0.80201 0.80590 0.79140 1.19590 1.20582 1.18671 1.19208 0.96151 0.89320 1.41566 0.89334 1.17294 0.92758 0.89776 0.92884 1.24403 1.07379 0.96807 1.20140 1.81882 1.22809 1.03256 1.61405 1.22563 1.00579 0.96156 1.05806 1.20201 0.97305 0.93707 0.99226 1.18953 0.95263 0.93293 1.01983 1.20891 0.94403 0.90531 0.89211 1.86645 1.75495 1.29894 1.45152 1.20783 1.00060 0.91841 1.04906 1.18193 0.88028 0.87001 0.96867 1.84746 1.52565 1.52108 1.40382 1.20130 0.93836 0.94886 1.00196 0.91366 0.81986 0.86726 0.93112 0.93101 0.78088 0.86209 0.76010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.33 10.83 55.54 0.60 -20.73 15 2 C 0.06 1.66 5.36 -17.33 -0.09 1.57 15 3 Si 0.91 19.35 29.57 -169.99 -5.03 14.32 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.43 -11.54 8.70 -38.07 -0.33 -11.87 15 8 H 0.09 2.32 6.38 -52.49 -0.33 1.99 15 9 C 0.08 2.21 5.68 -106.19 -0.60 1.60 15 10 C -0.35 -9.36 9.50 30.10 0.29 -9.07 15 11 S 0.04 0.97 22.96 -107.50 -2.47 -1.50 15 12 C -0.14 -3.08 6.44 -38.58 -0.25 -3.33 15 13 C -0.08 -1.56 9.70 -39.17 -0.38 -1.94 15 14 C -0.09 -1.63 5.50 -104.72 -0.58 -2.21 15 15 C 0.13 1.68 7.16 36.00 0.26 1.93 15 16 O -0.57 -7.66 13.64 -35.23 -0.48 -8.14 15 17 C -0.15 -2.87 9.60 -39.55 -0.38 -3.25 15 18 C 0.15 3.15 6.75 -38.61 -0.26 2.89 15 19 O -0.49 -9.89 11.43 -19.23 -0.22 -10.11 15 20 C -0.08 -1.95 6.04 -105.10 -0.63 -2.58 15 21 H 0.28 6.71 8.30 -40.82 -0.34 6.37 15 22 H 0.16 4.56 6.31 -52.49 -0.33 4.23 15 23 H 0.11 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.05 0.56 8.08 -51.93 -0.42 0.14 15 25 H 0.05 0.57 8.08 -51.93 -0.42 0.15 15 26 H 0.37 2.83 9.12 45.56 0.42 3.25 15 27 H 0.12 1.93 8.06 -52.49 -0.42 1.50 15 28 H 0.38 6.16 9.06 45.56 0.41 6.57 15 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -31.30 261.64 -7.27 -38.57 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -0.66 Total: 9.90 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -2.96 Total: -26.26 kcal Atomic # 7 Polarization: -21.33 SS G_CDS: 0.60 Total: -20.73 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.70 Total: -18.25 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.47 Total: -1.50 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.30 -7.27 -38.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345997.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.042 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds