Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31096 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48503 * 109.47133 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.46744 * 30.00658 * 3 2 1 6 6 H 1.48497 * 109.46731 * 150.00321 * 3 2 1 7 7 C 1.39678 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99742 * 190.66034 * 7 2 1 9 9 C 1.40817 * 120.00155 * 10.66909 * 7 2 1 10 10 C 1.36476 * 123.30319 * 23.38928 * 9 7 2 11 11 S 1.69979 * 111.93243 * 180.21276 * 10 9 7 12 12 C 1.75797 * 93.22367 * 359.69813 * 11 10 9 13 13 C 1.39899 * 130.16286 * 180.02562 * 12 11 10 14 14 C 1.37655 * 120.49035 * 180.26689 * 13 12 11 15 15 C 1.50698 * 119.87376 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47468 * 89.99832 * 15 14 13 17 17 C 1.38545 * 120.24782 * 359.97438 * 14 13 12 18 18 C 1.38018 * 120.19517 * 0.06293 * 17 14 13 19 19 O 1.35836 * 119.89736 * 179.97438 * 18 17 14 20 20 C 1.39263 * 110.18556 * 0.29678 * 12 11 10 21 21 H 0.96999 * 120.00339 * 359.97438 * 1 2 3 22 22 H 1.08001 * 124.03169 * 359.94573 * 10 9 7 23 23 H 1.08000 * 119.75723 * 0.24080 * 13 12 11 24 24 H 1.09004 * 109.47030 * 209.99954 * 15 14 13 25 25 H 1.09002 * 109.47082 * 329.99314 * 15 14 13 26 26 H 0.96694 * 113.99790 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.89967 * 180.02562 * 17 14 13 28 28 H 0.96698 * 113.99794 * 269.94060 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2449 1.6178 0.0000 4 1 2.4923 2.0465 -1.4001 5 1 1.4424 2.6526 0.7002 6 1 3.5425 1.4401 0.7000 7 6 2.0093 -1.2097 -0.0005 8 1 3.0753 -1.2178 0.1725 9 6 1.3235 -2.4185 -0.2269 10 6 0.1323 -2.4917 -0.8889 11 16 -0.4394 -4.0891 -0.9925 12 6 0.9456 -4.7458 -0.1318 13 6 1.2491 -6.0668 0.2149 14 6 2.4036 -6.3602 0.9047 15 6 2.7165 -7.7880 1.2715 16 8 3.4725 -8.3949 0.2216 17 6 3.2790 -5.3479 1.2630 18 6 2.9982 -4.0378 0.9315 19 8 3.8605 -3.0500 1.2863 20 6 1.8192 -3.7218 0.2253 21 1 -0.4850 0.8400 0.0004 22 1 -0.3873 -1.6362 -1.2945 23 1 0.5724 -6.8622 -0.0604 24 1 3.2960 -7.8073 2.1945 25 1 1.7867 -8.3384 1.4148 26 1 3.7101 -9.3168 0.3904 27 1 4.1834 -5.5845 1.8038 28 1 3.6790 -2.6621 2.1533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345997.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = -86.300987 kcal Electronic energy + Delta-G solvation = -15544.132495 eV Core-core repulsion = 12843.048214 eV Total energy + Delta-G solvation = -2701.084281 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80941 -38.17991 -37.45042 -36.42493 -34.19913 -30.93307 -30.47792 -27.97935 -26.46083 -23.78932 -22.82405 -21.33206 -19.30230 -18.47832 -18.26028 -17.73943 -16.87731 -16.78022 -15.98484 -15.74887 -15.15734 -14.79462 -14.57574 -14.06463 -13.90691 -13.21911 -13.09465 -12.92923 -12.86920 -12.49851 -12.37481 -11.97271 -11.64015 -11.25209 -11.13750 -11.01644 -10.88154 -10.01258 -9.17196 -8.59078 -8.42474 -6.27013 0.03822 0.30572 1.09669 1.27986 1.37457 1.50686 1.87083 1.92752 2.23452 2.60964 3.28898 3.40933 3.70342 4.06753 4.12583 4.30214 4.36162 4.52274 4.59912 4.91076 4.98682 5.25209 5.29605 5.38557 5.54203 5.70456 5.89685 6.01691 6.55740 6.85529 6.91280 6.98361 7.03357 8.41584 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.007357 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.249578 B = 3805.195064 C = 4615.452381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.022 3.978 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.458 4.458 8 H 0.087 0.913 9 C 0.059 3.941 10 C -0.392 4.392 11 S 0.066 5.934 12 C -0.147 4.147 13 C -0.088 4.088 14 C -0.080 4.080 15 C 0.129 3.871 16 O -0.590 6.590 17 C -0.144 4.144 18 C 0.131 3.869 19 O -0.498 6.498 20 C -0.124 4.124 21 H 0.282 0.718 22 H 0.136 0.864 23 H 0.142 0.858 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.400 0.600 27 H 0.153 0.847 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -11.179 5.223 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.491 4.491 8 H 0.105 0.895 9 C 0.050 3.950 10 C -0.528 4.528 11 S 0.329 5.671 12 C -0.263 4.263 13 C -0.112 4.112 14 C -0.083 4.083 15 C 0.052 3.948 16 O -0.400 6.400 17 C -0.166 4.166 18 C 0.085 3.915 19 O -0.310 6.310 20 C -0.135 4.135 21 H 0.092 0.908 22 H 0.154 0.846 23 H 0.160 0.840 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.251 0.749 27 H 0.170 0.830 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.904 -11.052 3.764 12.031 hybrid contribution 0.968 1.594 1.048 2.139 sum 3.872 -9.458 4.811 11.296 Atomic orbital electron populations 1.69982 1.08828 1.29616 1.37892 1.26749 0.95595 1.04399 0.92255 0.85124 0.79046 0.75917 0.79115 1.19497 1.19441 1.17771 1.19458 0.96239 0.90406 1.42995 0.89529 1.17745 0.93130 0.91396 0.92703 1.24279 1.08226 0.98440 1.21826 1.81398 1.23069 1.00544 1.62063 1.22873 1.00077 0.97456 1.05858 1.20601 0.98616 0.92739 0.99231 1.19609 0.93653 0.96006 0.99008 1.20944 0.96378 0.87566 0.89893 1.86552 1.75592 1.32306 1.45529 1.21177 1.01034 0.90536 1.03808 1.18443 0.87474 0.88475 0.97107 1.84684 1.52159 1.52381 1.41736 1.20309 0.96106 0.94269 1.02795 0.90817 0.84631 0.83988 0.90220 0.90533 0.74917 0.82985 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.10 10.83 21.79 0.24 -45.86 15 2 C 0.02 1.17 5.36 85.15 0.46 1.63 15 3 Si 0.99 40.33 29.57 68.60 2.03 42.36 15 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 7 C -0.46 -25.58 8.70 23.25 0.20 -25.38 15 8 H 0.09 4.69 6.38 -2.91 -0.02 4.68 15 9 C 0.06 3.36 5.68 -20.88 -0.12 3.24 15 10 C -0.39 -22.06 9.50 67.41 0.64 -21.42 15 11 S 0.07 3.08 22.96 -56.49 -1.30 1.78 15 12 C -0.15 -6.69 6.44 22.92 0.15 -6.54 15 13 C -0.09 -3.21 9.70 22.53 0.22 -2.99 15 14 C -0.08 -2.54 5.50 -19.93 -0.11 -2.65 15 15 C 0.13 2.72 7.16 71.24 0.51 3.23 15 16 O -0.59 -13.11 13.64 -148.98 -2.03 -15.14 15 17 C -0.14 -4.95 9.60 22.29 0.21 -4.73 15 18 C 0.13 5.60 6.75 22.90 0.15 5.76 15 19 O -0.50 -20.02 11.43 -91.71 -1.05 -21.06 15 20 C -0.12 -6.22 6.04 -20.17 -0.12 -6.35 15 21 H 0.28 14.17 8.30 -92.71 -0.77 13.40 15 22 H 0.14 8.19 6.31 -2.91 -0.02 8.17 15 23 H 0.14 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.08 1.27 8.08 -2.39 -0.02 1.25 15 25 H 0.08 1.27 8.08 -2.39 -0.02 1.25 15 26 H 0.40 4.09 9.12 -74.06 -0.68 3.42 15 27 H 0.15 4.22 8.06 -2.91 -0.02 4.19 15 28 H 0.40 12.73 9.06 -74.06 -0.67 12.06 15 Total: -1.00 -70.60 261.64 -0.04 -70.63 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.12 Total: 23.50 kcal Atomic # 6 Polarization: -58.40 SS G_CDS: 2.19 Total: -56.21 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.24 Total: -45.86 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -3.08 Total: -36.21 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.30 Total: 1.78 kcal Total: -70.60 -0.04 -70.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345997.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.668 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds