Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31093 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48498 * 109.46949 * 270.00136 * 3 2 1 5 5 H 1.48497 * 109.46683 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99747 * 3 2 1 7 7 C 1.39679 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 190.66562 * 7 2 1 9 9 C 1.40809 * 120.00375 * 10.66738 * 7 2 1 10 10 C 1.36487 * 123.29760 * 23.38706 * 9 7 2 11 11 S 1.69982 * 111.93223 * 180.02562 * 10 9 7 12 12 C 1.75802 * 93.22384 * 359.97438 * 11 10 9 13 13 C 1.39895 * 130.16169 * 180.02562 * 12 11 10 14 14 C 1.37649 * 120.48699 * 179.97438 * 13 12 11 15 15 C 1.38550 * 120.25261 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.90084 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47409 * 0.02562 * 16 15 14 18 18 C 1.38018 * 120.19226 * 0.27223 * 15 14 13 19 19 O 1.35829 * 119.89739 * 179.72469 * 18 15 14 20 20 C 1.39264 * 110.18405 * 0.02562 * 12 11 10 21 21 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 22 22 H 1.07996 * 124.03177 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.75614 * 359.95509 * 13 12 11 24 24 H 1.08009 * 119.87354 * 180.02562 * 14 13 12 25 25 H 1.09000 * 109.46909 * 239.99867 * 16 15 14 26 26 H 1.09003 * 109.46686 * 119.99928 * 16 15 14 27 27 H 0.96698 * 114.00103 * 180.02562 * 17 16 15 28 28 H 0.96698 * 114.00124 * 90.00597 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4424 2.6526 0.7000 6 1 3.5425 1.4402 0.7001 7 6 2.0093 -1.2097 0.0005 8 1 3.0753 -1.2176 0.1737 9 6 1.3236 -2.4187 -0.2246 10 6 0.1323 -2.4924 -0.8866 11 16 -0.4369 -4.0905 -0.9933 12 6 0.9452 -4.7459 -0.1268 13 6 1.2488 -6.0665 0.2206 14 6 2.4037 -6.3594 0.9100 15 6 3.2793 -5.3468 1.2672 16 6 4.5411 -5.6764 2.0224 17 8 4.6068 -7.0859 2.2482 18 6 2.9963 -4.0365 0.9387 19 8 3.8561 -3.0479 1.2967 20 6 1.8190 -3.7215 0.2290 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3871 -1.6373 -1.2933 23 1 0.5720 -6.8621 -0.0539 24 1 2.6285 -7.3826 1.1728 25 1 4.5386 -5.1544 2.9793 26 1 5.4064 -5.3615 1.4390 27 1 5.3948 -7.3706 2.7309 28 1 4.5366 -2.8600 0.6358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396346146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = -61.758196 kcal Electronic energy + Delta-G solvation = -15688.505574 eV Core-core repulsion = 12988.485549 eV Total energy + Delta-G solvation = -2700.020026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34263 -36.70149 -36.02965 -34.78205 -32.31388 -30.01521 -27.92692 -26.28452 -25.15153 -22.07746 -21.28723 -19.21727 -18.11606 -17.27126 -16.43291 -16.03583 -15.09227 -14.72848 -14.57679 -14.45499 -14.04679 -13.32289 -12.95477 -12.36911 -12.24762 -11.73439 -11.34206 -11.18458 -11.06589 -10.88897 -10.69601 -10.42582 -10.09962 -9.79576 -9.52422 -9.35455 -9.09391 -8.28099 -7.35942 -6.65999 -6.57286 -4.24767 1.79094 1.86708 2.84428 2.99942 3.11514 3.14973 3.72486 3.84036 4.02842 4.30025 4.36370 4.92719 5.30877 5.33611 5.46952 5.65116 5.74738 5.93284 6.22047 6.41041 6.68636 6.85708 7.04795 7.06722 7.24192 7.41713 7.72195 7.73420 8.01151 8.33963 8.53246 8.83614 8.94391 10.34947 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.008534 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.498016 B = 3280.347344 C = 4416.513556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.355 4.355 11 S 0.040 5.960 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.089 4.089 15 C -0.149 4.149 16 C 0.135 3.865 17 O -0.571 6.571 18 C 0.152 3.848 19 O -0.485 6.485 20 C -0.086 4.086 21 H 0.276 0.724 22 H 0.162 0.838 23 H 0.115 0.885 24 H 0.129 0.871 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.376 0.624 28 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -7.166 1.249 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.074 3.926 10 C -0.491 4.491 11 S 0.303 5.697 12 C -0.246 4.246 13 C -0.132 4.132 14 C -0.110 4.110 15 C -0.153 4.153 16 C 0.058 3.942 17 O -0.376 6.376 18 C 0.106 3.894 19 O -0.294 6.294 20 C -0.097 4.097 21 H 0.086 0.914 22 H 0.179 0.821 23 H 0.133 0.867 24 H 0.146 0.854 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.222 0.778 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.434 -7.437 0.765 8.692 hybrid contribution 2.289 1.649 0.592 2.883 sum 6.723 -5.787 1.357 8.974 Atomic orbital electron populations 1.69873 1.07278 1.28386 1.37562 1.25800 0.94849 1.01013 0.93324 0.86227 0.80277 0.80739 0.78916 1.19652 1.20507 1.18723 1.19038 0.95703 0.89428 1.41486 0.90109 1.17265 0.92926 0.89654 0.92731 1.24359 1.07403 0.96790 1.20516 1.81884 1.23532 1.03311 1.60927 1.22645 1.00166 0.96403 1.05339 1.20395 0.97880 0.93654 1.01319 1.20413 0.93372 0.98713 0.98458 1.19517 0.98115 0.92400 1.05309 1.20582 0.94865 0.80830 0.97963 1.86449 1.47936 1.23326 1.79868 1.17891 0.89983 0.85428 0.96141 1.84786 1.44257 1.54700 1.45693 1.19963 0.95230 0.94888 0.99572 0.91358 0.82056 0.86687 0.85356 0.92528 0.93198 0.77764 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.60 10.83 55.54 0.60 -21.00 15 2 C 0.07 1.68 5.36 -17.33 -0.09 1.59 15 3 Si 0.91 19.29 29.57 -169.99 -5.03 14.27 15 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.42 -11.30 8.70 -38.07 -0.33 -11.63 15 8 H 0.08 2.02 6.29 -52.49 -0.33 1.69 15 9 C 0.08 2.23 5.68 -106.20 -0.60 1.63 15 10 C -0.35 -9.45 9.50 30.10 0.29 -9.16 15 11 S 0.04 0.91 22.96 -107.50 -2.47 -1.56 15 12 C -0.13 -2.95 6.44 -38.58 -0.25 -3.20 15 13 C -0.11 -2.12 10.06 -39.18 -0.39 -2.51 15 14 C -0.09 -1.63 9.35 -39.68 -0.37 -2.00 15 15 C -0.15 -2.77 5.88 -104.59 -0.62 -3.39 15 16 C 0.13 1.94 6.87 36.01 0.25 2.19 15 17 O -0.57 -7.35 12.13 -35.23 -0.43 -7.78 15 18 C 0.15 3.23 6.73 -38.61 -0.26 2.97 15 19 O -0.49 -9.46 10.90 -19.20 -0.21 -9.67 15 20 C -0.09 -2.09 6.04 -105.10 -0.63 -2.72 15 21 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 22 H 0.16 4.54 6.31 -52.49 -0.33 4.21 15 23 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 24 H 0.13 2.10 6.99 -52.48 -0.37 1.74 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 27 H 0.38 2.79 9.12 45.56 0.42 3.20 15 28 H 0.38 5.71 8.92 45.56 0.41 6.11 15 LS Contribution 258.60 15.07 3.90 3.90 Total: -1.00 -31.05 258.60 -7.26 -38.31 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -0.61 Total: 9.77 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.02 Total: -26.23 kcal Atomic # 7 Polarization: -21.60 SS G_CDS: 0.60 Total: -21.00 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.64 Total: -17.44 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.47 Total: -1.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.05 -7.26 -38.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.445 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds