Wall clock time and date at job start Mon Mar 30 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31093 * 1 3 3 Si 1.86804 * 120.00078 * 2 1 4 4 H 1.48498 * 109.46949 * 270.00136 * 3 2 1 5 5 H 1.48497 * 109.46683 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.46991 * 149.99747 * 3 2 1 7 7 C 1.39679 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 190.66562 * 7 2 1 9 9 C 1.40809 * 120.00375 * 10.66738 * 7 2 1 10 10 C 1.36487 * 123.29760 * 23.38706 * 9 7 2 11 11 S 1.69982 * 111.93223 * 180.02562 * 10 9 7 12 12 C 1.75802 * 93.22384 * 359.97438 * 11 10 9 13 13 C 1.39895 * 130.16169 * 180.02562 * 12 11 10 14 14 C 1.37649 * 120.48699 * 179.97438 * 13 12 11 15 15 C 1.38550 * 120.25261 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.90084 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47409 * 0.02562 * 16 15 14 18 18 C 1.38018 * 120.19226 * 0.27223 * 15 14 13 19 19 O 1.35829 * 119.89739 * 179.72469 * 18 15 14 20 20 C 1.39264 * 110.18405 * 0.02562 * 12 11 10 21 21 H 0.97000 * 120.00145 * 0.02562 * 1 2 3 22 22 H 1.07996 * 124.03177 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.75614 * 359.95509 * 13 12 11 24 24 H 1.08009 * 119.87354 * 180.02562 * 14 13 12 25 25 H 1.09000 * 109.46909 * 239.99867 * 16 15 14 26 26 H 1.09003 * 109.46686 * 119.99928 * 16 15 14 27 27 H 0.96698 * 114.00103 * 180.02562 * 17 16 15 28 28 H 0.96698 * 114.00124 * 90.00597 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 2.4924 2.0464 -1.4001 5 1 1.4424 2.6526 0.7000 6 1 3.5425 1.4402 0.7001 7 6 2.0093 -1.2097 0.0005 8 1 3.0753 -1.2176 0.1737 9 6 1.3236 -2.4187 -0.2246 10 6 0.1323 -2.4924 -0.8866 11 16 -0.4369 -4.0905 -0.9933 12 6 0.9452 -4.7459 -0.1268 13 6 1.2488 -6.0665 0.2206 14 6 2.4037 -6.3594 0.9100 15 6 3.2793 -5.3468 1.2672 16 6 4.5411 -5.6764 2.0224 17 8 4.6068 -7.0859 2.2482 18 6 2.9963 -4.0365 0.9387 19 8 3.8561 -3.0479 1.2967 20 6 1.8190 -3.7215 0.2290 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3871 -1.6373 -1.2933 23 1 0.5720 -6.8621 -0.0539 24 1 2.6285 -7.3826 1.1728 25 1 4.5386 -5.1544 2.9793 26 1 5.4064 -5.3615 1.4390 27 1 5.3948 -7.3706 2.7309 28 1 4.5366 -2.8600 0.6358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396346146.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:51 Heat of formation + Delta-G solvation = -84.816100 kcal Electronic energy + Delta-G solvation = -15689.505440 eV Core-core repulsion = 12988.485549 eV Total energy + Delta-G solvation = -2701.019891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89643 -37.87314 -37.60513 -36.47297 -34.10622 -31.51674 -29.65385 -28.07478 -26.63338 -23.77110 -22.86067 -20.95650 -19.68035 -18.61691 -18.15976 -17.58647 -16.80533 -16.14428 -16.07616 -15.83983 -15.46311 -14.92140 -14.64807 -13.99116 -13.76542 -13.41931 -13.05549 -12.95019 -12.68024 -12.61830 -12.18789 -11.88913 -11.72714 -11.31719 -11.13333 -11.11066 -10.83127 -9.92790 -9.09601 -8.56452 -8.38224 -6.24489 0.16016 0.26609 1.13023 1.30640 1.37815 1.51497 1.91108 1.97932 2.24150 2.66567 3.28098 3.35700 3.46311 4.04142 4.15470 4.35702 4.49255 4.62170 4.65779 4.91173 5.07454 5.26194 5.30145 5.41601 5.56076 5.72542 5.93858 6.02655 6.55896 6.86727 6.91222 6.98948 7.00012 8.43926 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.008534 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.498016 B = 3280.347344 C = 4416.513556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.018 3.982 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.453 4.453 8 H 0.090 0.910 9 C 0.061 3.939 10 C -0.394 4.394 11 S 0.060 5.940 12 C -0.145 4.145 13 C -0.110 4.110 14 C -0.078 4.078 15 C -0.142 4.142 16 C 0.141 3.859 17 O -0.581 6.581 18 C 0.141 3.859 19 O -0.492 6.492 20 C -0.127 4.127 21 H 0.280 0.720 22 H 0.135 0.865 23 H 0.144 0.856 24 H 0.157 0.843 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.402 0.598 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.056 -8.525 2.235 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.194 4.194 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.108 0.892 9 C 0.052 3.948 10 C -0.530 4.530 11 S 0.323 5.677 12 C -0.261 4.261 13 C -0.134 4.134 14 C -0.098 4.098 15 C -0.146 4.146 16 C 0.064 3.936 17 O -0.390 6.390 18 C 0.095 3.905 19 O -0.304 6.304 20 C -0.137 4.137 21 H 0.090 0.910 22 H 0.153 0.847 23 H 0.162 0.838 24 H 0.175 0.825 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.253 0.747 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.641 -8.826 1.756 11.185 hybrid contribution 1.699 1.912 0.354 2.582 sum 8.340 -6.914 2.110 11.037 Atomic orbital electron populations 1.69998 1.09005 1.29533 1.38234 1.26804 0.95626 1.04667 0.92296 0.85089 0.79005 0.75700 0.79193 1.18914 1.20055 1.17619 1.19430 0.96356 0.90288 1.42473 0.89235 1.17725 0.93265 0.91329 0.92506 1.24251 1.08272 0.98307 1.22153 1.81421 1.23918 1.00717 1.61634 1.22925 0.99866 0.97633 1.05665 1.20773 0.98878 0.92839 1.00863 1.20826 0.92298 1.00005 0.96714 1.19992 0.99622 0.91162 1.03839 1.20493 0.93268 0.81967 0.97905 1.86360 1.50032 1.22044 1.80553 1.18011 0.89531 0.86820 0.96177 1.84722 1.44539 1.54673 1.46429 1.20171 0.97448 0.94181 1.01890 0.90954 0.84748 0.83789 0.82512 0.91978 0.90797 0.74702 0.74389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.02 10.83 21.79 0.24 -46.78 15 2 C 0.02 0.94 5.36 85.15 0.46 1.39 15 3 Si 0.99 39.98 29.57 68.60 2.03 42.01 15 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 15 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 15 7 C -0.45 -24.85 8.70 23.25 0.20 -24.65 15 8 H 0.09 4.55 6.29 -2.91 -0.02 4.53 15 9 C 0.06 3.41 5.68 -20.88 -0.12 3.29 15 10 C -0.39 -22.13 9.50 67.41 0.64 -21.49 15 11 S 0.06 2.82 22.96 -56.49 -1.30 1.52 15 12 C -0.15 -6.61 6.44 22.92 0.15 -6.46 15 13 C -0.11 -4.03 10.06 22.53 0.23 -3.81 15 14 C -0.08 -2.59 9.35 22.20 0.21 -2.38 15 15 C -0.14 -4.88 5.88 -19.84 -0.12 -4.99 15 16 C 0.14 3.48 6.87 71.24 0.49 3.97 15 17 O -0.58 -12.16 12.13 -148.98 -1.81 -13.97 15 18 C 0.14 5.85 6.73 22.90 0.15 6.01 15 19 O -0.49 -18.62 10.90 -91.63 -1.00 -19.62 15 20 C -0.13 -6.26 6.04 -20.17 -0.12 -6.38 15 21 H 0.28 14.35 8.30 -92.71 -0.77 13.58 15 22 H 0.14 8.12 6.31 -2.91 -0.02 8.10 15 23 H 0.14 4.36 8.06 -2.91 -0.02 4.34 15 24 H 0.16 4.37 6.99 -2.91 -0.02 4.35 15 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.40 3.97 9.12 -74.06 -0.68 3.30 15 28 H 0.40 11.43 8.92 -74.06 -0.66 10.77 15 Total: -1.00 -69.32 258.60 0.23 -69.09 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.10 Total: 23.26 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 2.17 Total: -55.51 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.24 Total: -46.78 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -2.81 Total: -33.59 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.30 Total: 1.52 kcal Total: -69.32 0.23 -69.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346146.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.725 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds