Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47168 * 274.57387 * 3 2 1 5 5 H 1.48503 * 109.47193 * 34.57319 * 3 2 1 6 6 H 1.48502 * 109.47286 * 154.56922 * 3 2 1 7 7 C 1.39909 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00324 * 332.61124 * 7 2 1 9 9 C 1.40921 * 119.99600 * 152.60638 * 7 2 1 10 10 C 1.42230 * 120.07557 * 316.24446 * 9 7 2 11 11 S 1.75918 * 130.47326 * 359.97438 * 10 9 7 12 12 C 1.75293 * 92.17664 * 179.97438 * 11 10 9 13 13 C 1.31873 * 111.33631 * 359.97438 * 12 11 10 14 14 C 1.39382 * 119.76555 * 179.97438 * 10 9 7 15 15 C 1.41371 * 119.04323 * 359.97056 * 14 10 9 16 16 C 1.38259 * 120.85617 * 0.06711 * 15 14 10 17 17 O 1.35963 * 119.68324 * 179.97438 * 16 15 14 18 18 C 1.38333 * 120.63738 * 359.93067 * 16 15 14 19 19 C 1.50701 * 120.07841 * 180.02562 * 18 16 15 20 20 O 1.42907 * 109.46620 * 269.97351 * 19 18 16 21 21 H 0.97002 * 119.99817 * 359.97438 * 1 2 3 22 22 H 1.08008 * 124.33676 * 179.97438 * 12 11 10 23 23 H 1.07999 * 122.56284 * 180.02562 * 13 12 11 24 24 H 1.08004 * 119.57275 * 179.97438 * 15 14 10 25 25 H 0.96693 * 114.00404 * 269.96505 * 17 16 15 26 26 H 1.08987 * 109.47389 * 29.97148 * 19 18 16 27 27 H 1.08997 * 109.46864 * 149.97977 * 19 18 16 28 28 H 0.96701 * 113.99329 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3936 2.1022 -1.3956 5 1 1.4920 2.6228 0.7945 6 1 3.5853 1.4141 0.6012 7 6 2.0083 -1.2117 0.0005 8 1 1.5591 -2.0944 0.4312 9 6 3.2989 -1.2803 -0.5610 10 6 3.5694 -0.6472 -1.8055 11 16 2.5174 0.2809 -2.8669 12 6 3.8094 0.5532 -4.0198 13 6 4.9328 -0.0130 -3.6242 14 6 4.8484 -0.7187 -2.3547 15 6 5.8563 -1.4234 -1.6575 16 6 5.5856 -2.0370 -0.4485 17 8 6.5727 -2.7090 0.2015 18 6 4.3202 -1.9730 0.1067 19 6 4.0391 -2.6459 1.4255 20 8 3.6076 -3.9883 1.1929 21 1 -0.4850 0.8401 0.0004 22 1 3.6997 1.1131 -4.9369 23 1 5.8454 0.0422 -4.1989 24 1 6.8503 -1.4846 -2.0755 25 1 6.6343 -3.6442 -0.0361 26 1 4.9465 -2.6555 2.0292 27 1 3.2574 -2.0993 1.9530 28 1 3.4081 -4.4826 1.9997 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396346495.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -78.647237 kcal Electronic energy + Delta-G solvation = -16088.896148 eV Core-core repulsion = 13388.143758 eV Total energy + Delta-G solvation = -2700.752389 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63045 -38.16028 -37.52296 -36.15740 -34.54520 -31.82792 -30.51541 -27.51068 -26.21438 -23.66603 -22.74082 -21.01324 -19.85926 -18.40416 -18.09924 -17.99056 -17.19553 -16.76230 -15.89924 -15.63314 -15.34463 -14.82902 -14.45445 -14.35965 -13.91567 -13.79236 -13.46802 -13.16560 -12.95276 -12.46014 -12.31751 -12.05423 -11.44780 -11.28436 -11.25966 -11.00160 -10.76357 -9.85915 -9.17879 -8.97154 -8.35312 -6.54095 -0.00290 0.52371 0.83506 1.18869 1.33826 1.38505 1.46925 1.57642 2.12505 2.48897 3.06934 3.45614 3.84791 4.07170 4.27572 4.41431 4.45391 4.66211 4.76459 4.86097 5.07159 5.11233 5.20424 5.37023 5.63419 5.63676 5.86593 5.95524 6.20214 6.56292 6.69086 7.00739 7.03793 8.09790 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.013745 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.522974 B = 2036.648806 C = 3054.202950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.082 3.918 3 Si 0.863 3.137 4 H -0.184 1.184 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.491 4.491 8 H 0.066 0.934 9 C 0.132 3.868 10 C -0.232 4.232 11 S 0.039 5.961 12 C -0.194 4.194 13 C -0.133 4.133 14 C -0.044 4.044 15 C -0.222 4.222 16 C 0.157 3.843 17 O -0.504 6.504 18 C -0.235 4.235 19 C 0.150 3.850 20 O -0.586 6.586 21 H 0.295 0.705 22 H 0.198 0.802 23 H 0.172 0.828 24 H 0.138 0.862 25 H 0.402 0.598 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 0.577 -3.612 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.137 4.137 3 Si 0.684 3.316 4 H -0.107 1.107 5 H -0.185 1.185 6 H -0.197 1.197 7 C -0.520 4.520 8 H 0.084 0.916 9 C 0.127 3.873 10 C -0.347 4.347 11 S 0.303 5.697 12 C -0.327 4.327 13 C -0.164 4.164 14 C -0.053 4.053 15 C -0.243 4.243 16 C 0.111 3.889 17 O -0.316 6.316 18 C -0.240 4.240 19 C 0.074 3.926 20 O -0.393 6.393 21 H 0.105 0.895 22 H 0.215 0.785 23 H 0.189 0.811 24 H 0.156 0.844 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.186 1.870 -3.978 7.589 hybrid contribution 1.014 -0.653 0.820 1.458 sum 7.200 1.217 -3.158 7.956 Atomic orbital electron populations 1.69800 1.08873 1.31427 1.34443 1.26295 0.94678 1.02609 0.90118 0.87042 0.79917 0.79883 0.84800 1.10720 1.18518 1.19680 1.19065 0.98300 0.97293 1.37318 0.91565 1.16953 0.92352 0.89541 0.88459 1.23055 0.97665 1.13052 1.00966 1.84353 1.15934 1.54168 1.15290 1.25525 0.96372 1.06591 1.04251 1.21159 1.00300 0.99934 0.94971 1.19458 0.92249 0.98373 0.95214 1.20785 0.99165 1.08080 0.96319 1.17851 0.86254 0.94516 0.90242 1.84636 1.52305 1.27495 1.67185 1.20087 0.92462 1.11583 0.99912 1.20393 0.97190 0.81775 0.93281 1.86538 1.89852 1.25598 1.37341 0.89462 0.78514 0.81073 0.84388 0.74013 0.92319 0.94363 0.76500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.04 13.93 21.82 0.30 -43.73 15 2 C 0.08 4.35 4.57 85.24 0.39 4.74 15 3 Si 0.86 39.69 25.06 68.60 1.72 41.41 15 4 H -0.18 -7.77 5.33 98.00 0.52 -7.25 15 5 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 6 H -0.27 -13.46 7.11 99.48 0.71 -12.75 15 7 C -0.49 -27.44 7.91 23.33 0.18 -27.26 15 8 H 0.07 4.04 7.81 -2.91 -0.02 4.02 15 9 C 0.13 6.92 4.62 -21.13 -0.10 6.82 15 10 C -0.23 -11.20 4.97 23.54 0.12 -11.08 15 11 S 0.04 1.68 18.04 -56.49 -1.02 0.66 15 12 C -0.19 -6.33 11.02 67.00 0.74 -5.59 15 13 C -0.13 -4.44 10.39 23.32 0.24 -4.20 15 14 C -0.04 -1.88 6.03 -20.37 -0.12 -2.00 15 15 C -0.22 -8.90 10.03 23.05 0.23 -8.67 15 16 C 0.16 6.64 6.64 22.30 0.15 6.79 15 17 O -0.50 -17.54 12.49 -93.13 -1.16 -18.70 15 18 C -0.24 -11.22 5.58 -19.34 -0.11 -11.33 15 19 C 0.15 6.34 6.43 71.24 0.46 6.80 15 20 O -0.59 -22.92 13.64 -148.98 -2.03 -24.95 15 21 H 0.29 14.25 8.30 -92.71 -0.77 13.49 15 22 H 0.20 4.60 8.06 -2.91 -0.02 4.57 15 23 H 0.17 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.14 4.61 8.06 -2.91 -0.02 4.58 15 25 H 0.40 10.31 9.06 -74.06 -0.67 9.63 15 26 H 0.06 2.18 7.51 -2.39 -0.02 2.17 15 27 H 0.04 1.72 7.05 -2.39 -0.02 1.70 15 28 H 0.39 10.54 9.12 -74.06 -0.68 9.87 15 Total: -1.00 -66.19 253.93 -0.32 -66.51 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.31 Total: 23.79 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 2.18 Total: -44.99 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.30 Total: -43.73 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -3.20 Total: -43.65 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.72 Total: 41.41 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.02 Total: 0.66 kcal Total: -66.19 -0.32 -66.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346495.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.137 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds