Wall clock time and date at job start Mon Mar 30 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31249 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48510 * 109.47346 * 270.00591 * 3 2 1 5 5 H 1.48507 * 109.47237 * 30.00222 * 3 2 1 6 6 H 1.48494 * 109.47522 * 150.00558 * 3 2 1 7 7 C 1.39564 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99699 * 162.59166 * 7 2 1 9 9 C 1.40665 * 119.99838 * 342.58149 * 7 2 1 10 10 C 1.37460 * 123.24282 * 323.03930 * 9 7 2 11 11 O 1.35248 * 124.56355 * 0.06065 * 10 9 7 12 12 S 1.75179 * 110.86297 * 180.02562 * 10 9 7 13 13 C 1.75875 * 92.75417 * 0.02562 * 12 10 9 14 14 C 1.39804 * 129.71479 * 179.97438 * 13 12 10 15 15 C 1.37643 * 120.48529 * 180.02562 * 14 13 12 16 16 C 1.38641 * 120.11366 * 0.02562 * 15 14 13 17 17 C 1.37350 * 120.24477 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.78138 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47271 * 359.97438 * 18 17 16 20 20 C 1.39287 * 110.63394 * 359.97438 * 13 12 10 21 21 H 0.96998 * 120.00428 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99794 * 179.97438 * 11 10 9 23 23 H 1.08007 * 119.75587 * 0.06185 * 14 13 12 24 24 H 1.08003 * 119.94336 * 180.27786 * 15 14 13 25 25 H 1.08002 * 119.87876 * 179.97438 * 16 15 14 26 26 H 1.08994 * 109.47810 * 119.99697 * 18 17 16 27 27 H 1.09005 * 109.47131 * 239.99878 * 18 17 16 28 28 H 0.96697 * 114.00361 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4939 2.0466 -1.4001 5 1 1.4439 2.6527 0.7001 6 1 3.5440 1.4403 0.6999 7 6 2.0103 -1.2087 -0.0005 8 1 3.0532 -1.2299 -0.2804 9 6 1.3554 -2.3991 0.3636 10 6 0.4064 -2.4638 1.3560 11 8 -0.0081 -1.4071 2.0914 12 16 -0.1944 -4.0991 1.5389 13 6 0.8454 -4.7147 0.2610 14 6 0.9741 -6.0144 -0.2377 15 6 1.8597 -6.2873 -1.2554 16 6 2.6339 -5.2716 -1.7949 17 6 2.5215 -3.9884 -1.3181 18 6 3.3677 -2.8922 -1.9126 19 8 4.1955 -3.4351 -2.9431 20 6 1.6199 -3.6900 -0.2779 21 1 -0.4851 0.8400 0.0004 22 1 -0.6830 -1.6258 2.7485 23 1 0.3737 -6.8100 0.1783 24 1 1.9488 -7.2937 -1.6371 25 1 3.3279 -5.4901 -2.5931 26 1 2.7215 -2.1219 -2.3334 27 1 3.9950 -2.4554 -1.1354 28 1 4.7683 -2.7843 -3.3714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396347068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:28 Heat of formation + Delta-G solvation = -49.648537 kcal Electronic energy + Delta-G solvation = -15945.602516 eV Core-core repulsion = 13246.107605 eV Total energy + Delta-G solvation = -2699.494911 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86685 -36.57263 -36.04359 -33.91375 -32.08274 -30.85770 -27.96918 -26.22453 -24.29144 -22.34006 -20.70239 -19.54128 -17.71242 -17.16225 -16.14020 -15.92575 -15.09157 -14.59695 -14.30908 -14.01608 -13.64134 -13.00712 -12.97302 -12.80279 -12.03882 -11.82295 -11.61389 -11.27969 -11.13546 -10.85881 -10.54103 -10.22145 -10.03197 -9.84176 -9.50351 -9.25116 -8.87405 -8.23806 -7.07922 -6.63412 -6.39414 -4.13826 1.84816 2.00100 2.57846 3.02130 3.13022 3.17984 3.21983 3.74735 4.11474 4.52178 4.73377 5.19625 5.33260 5.54974 5.58420 5.93313 6.09258 6.13109 6.27760 6.34670 6.64123 6.73467 7.05961 7.11851 7.25567 7.34072 7.67711 7.78245 8.08323 8.42686 8.60744 9.02349 9.10621 10.49492 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.011350 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.529896 B = 2466.379229 C = 3773.562611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.080 3.920 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.452 4.452 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.074 4.074 11 O -0.406 6.406 12 S -0.046 6.046 13 C -0.132 4.132 14 C -0.092 4.092 15 C -0.135 4.135 16 C -0.114 4.114 17 C -0.054 4.054 18 C 0.121 3.879 19 O -0.582 6.582 20 C -0.026 4.026 21 H 0.273 0.727 22 H 0.354 0.646 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -4.669 -1.210 5.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.095 0.905 9 C 0.034 3.966 10 C -0.234 4.234 11 O -0.204 6.204 12 S 0.210 5.790 13 C -0.247 4.247 14 C -0.116 4.116 15 C -0.156 4.156 16 C -0.135 4.135 17 C -0.056 4.056 18 C 0.044 3.956 19 O -0.387 6.387 20 C -0.035 4.035 21 H 0.083 0.917 22 H 0.201 0.799 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.144 0.856 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.517 -5.269 -0.389 5.497 hybrid contribution 0.858 1.747 -0.574 2.029 sum 2.375 -3.522 -0.963 4.356 Atomic orbital electron populations 1.69895 1.07199 1.28246 1.35305 1.25548 0.94527 1.00116 0.93562 0.86488 0.80634 0.81955 0.78546 1.20113 1.20489 1.18921 1.18615 0.97000 0.90274 1.42577 0.90532 1.16676 0.96734 0.90821 0.92360 1.22259 1.10829 0.85599 1.04682 1.84875 1.57240 1.29057 1.49276 1.83219 1.48546 1.06427 1.40778 1.21892 1.03286 0.97078 1.02462 1.20339 0.99728 0.93699 0.97784 1.20724 0.98169 0.98676 0.97997 1.20597 1.00208 0.91989 1.00669 1.19404 0.96422 0.94203 0.95566 1.21164 0.91867 0.93649 0.88908 1.86361 1.58074 1.40240 1.54048 1.19154 0.95556 0.93371 0.95416 0.91699 0.79903 0.87046 0.86564 0.85638 0.90903 0.91715 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.95 11.12 55.53 0.62 -20.33 15 2 C 0.08 2.05 4.79 -17.31 -0.08 1.97 15 3 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 15 4 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 7 C -0.45 -11.83 7.49 -38.17 -0.29 -12.11 15 8 H 0.08 1.88 5.40 -52.49 -0.28 1.60 15 9 C 0.04 1.14 5.48 -105.91 -0.58 0.56 15 10 C -0.07 -1.86 7.02 30.45 0.21 -1.64 15 11 O -0.41 -9.89 11.01 -17.44 -0.19 -10.09 15 12 S -0.05 -1.00 23.13 -107.50 -2.49 -3.48 15 13 C -0.13 -2.95 6.41 -38.61 -0.25 -3.20 15 14 C -0.09 -1.75 10.06 -39.21 -0.39 -2.15 15 15 C -0.14 -2.39 10.03 -39.65 -0.40 -2.78 15 16 C -0.11 -2.17 9.35 -39.76 -0.37 -2.55 15 17 C -0.05 -1.17 5.93 -103.95 -0.62 -1.79 15 18 C 0.12 2.33 5.68 36.01 0.20 2.53 15 19 O -0.58 -9.45 12.10 -35.23 -0.43 -9.88 15 20 C -0.03 -0.62 5.97 -105.16 -0.63 -1.25 15 21 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 22 H 0.35 6.86 9.00 45.56 0.41 7.27 15 23 H 0.11 1.81 8.06 -52.48 -0.42 1.39 15 24 H 0.12 1.64 8.06 -52.48 -0.42 1.21 15 25 H 0.13 2.20 6.96 -52.49 -0.37 1.84 15 26 H 0.07 1.49 7.54 -51.93 -0.39 1.10 15 27 H 0.06 1.25 6.54 -51.93 -0.34 0.91 15 28 H 0.37 4.16 9.12 45.56 0.42 4.57 15 LS Contribution 255.45 15.07 3.85 3.85 Total: -1.00 -30.48 255.45 -7.39 -37.87 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -0.53 Total: 10.11 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.19 Total: -22.41 kcal Atomic # 7 Polarization: -20.95 SS G_CDS: 0.62 Total: -20.33 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.62 Total: -19.97 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.49 Total: -3.48 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.48 -7.39 -37.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396347068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.782 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds