Wall clock time and date at job start Mon Mar 30 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31249 * 1 3 3 Si 1.86797 * 119.99880 * 2 1 4 4 H 1.48510 * 109.47346 * 270.00591 * 3 2 1 5 5 H 1.48507 * 109.47237 * 30.00222 * 3 2 1 6 6 H 1.48494 * 109.47522 * 150.00558 * 3 2 1 7 7 C 1.39564 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99699 * 162.59166 * 7 2 1 9 9 C 1.40665 * 119.99838 * 342.58149 * 7 2 1 10 10 C 1.37460 * 123.24282 * 323.03930 * 9 7 2 11 11 O 1.35248 * 124.56355 * 0.06065 * 10 9 7 12 12 S 1.75179 * 110.86297 * 180.02562 * 10 9 7 13 13 C 1.75875 * 92.75417 * 0.02562 * 12 10 9 14 14 C 1.39804 * 129.71479 * 179.97438 * 13 12 10 15 15 C 1.37643 * 120.48529 * 180.02562 * 14 13 12 16 16 C 1.38641 * 120.11366 * 0.02562 * 15 14 13 17 17 C 1.37350 * 120.24477 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.78138 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47271 * 359.97438 * 18 17 16 20 20 C 1.39287 * 110.63394 * 359.97438 * 13 12 10 21 21 H 0.96998 * 120.00428 * 359.97438 * 1 2 3 22 22 H 0.96703 * 113.99794 * 179.97438 * 11 10 9 23 23 H 1.08007 * 119.75587 * 0.06185 * 14 13 12 24 24 H 1.08003 * 119.94336 * 180.27786 * 15 14 13 25 25 H 1.08002 * 119.87876 * 179.97438 * 16 15 14 26 26 H 1.08994 * 109.47810 * 119.99697 * 18 17 16 27 27 H 1.09005 * 109.47131 * 239.99878 * 18 17 16 28 28 H 0.96697 * 114.00361 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4939 2.0466 -1.4001 5 1 1.4439 2.6527 0.7001 6 1 3.5440 1.4403 0.6999 7 6 2.0103 -1.2087 -0.0005 8 1 3.0532 -1.2299 -0.2804 9 6 1.3554 -2.3991 0.3636 10 6 0.4064 -2.4638 1.3560 11 8 -0.0081 -1.4071 2.0914 12 16 -0.1944 -4.0991 1.5389 13 6 0.8454 -4.7147 0.2610 14 6 0.9741 -6.0144 -0.2377 15 6 1.8597 -6.2873 -1.2554 16 6 2.6339 -5.2716 -1.7949 17 6 2.5215 -3.9884 -1.3181 18 6 3.3677 -2.8922 -1.9126 19 8 4.1955 -3.4351 -2.9431 20 6 1.6199 -3.6900 -0.2779 21 1 -0.4851 0.8400 0.0004 22 1 -0.6830 -1.6258 2.7485 23 1 0.3737 -6.8100 0.1783 24 1 1.9488 -7.2937 -1.6371 25 1 3.3279 -5.4901 -2.5931 26 1 2.7215 -2.1219 -2.3334 27 1 3.9950 -2.4554 -1.1354 28 1 4.7683 -2.7843 -3.3714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396347068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:27 Heat of formation + Delta-G solvation = -71.941015 kcal Electronic energy + Delta-G solvation = -15946.569191 eV Core-core repulsion = 13246.107605 eV Total energy + Delta-G solvation = -2700.461586 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45123 -38.36949 -37.44723 -35.71923 -33.86242 -32.37414 -29.69226 -27.91944 -25.97617 -23.99386 -22.30208 -21.30871 -19.44811 -18.83133 -17.73178 -17.49016 -16.82694 -16.28446 -15.83728 -15.63490 -15.18893 -14.76065 -14.59762 -14.42389 -13.75071 -13.48223 -13.21028 -12.98122 -12.83641 -12.58668 -12.20939 -11.81052 -11.66777 -11.30601 -11.22201 -10.97439 -10.65822 -9.87601 -8.74526 -8.50918 -8.20737 -6.07110 0.22512 0.42983 0.90307 1.26797 1.37863 1.41396 1.52011 1.97867 2.32343 2.86741 3.33534 3.40211 3.60761 4.09454 4.21502 4.43839 4.57605 4.61404 4.70997 4.77198 5.10322 5.23481 5.37340 5.46027 5.59456 5.76065 5.91356 6.16941 6.50662 6.79886 6.95394 7.09809 7.33473 8.61626 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.011350 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.529896 B = 2466.379229 C = 3773.562611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.037 3.963 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.475 4.475 8 H 0.080 0.920 9 C 0.009 3.991 10 C -0.100 4.100 11 O -0.424 6.424 12 S -0.009 6.009 13 C -0.155 4.155 14 C -0.095 4.095 15 C -0.117 4.117 16 C -0.110 4.110 17 C -0.078 4.078 18 C 0.135 3.865 19 O -0.580 6.580 20 C -0.064 4.064 21 H 0.274 0.726 22 H 0.371 0.629 23 H 0.143 0.857 24 H 0.164 0.836 25 H 0.145 0.855 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -6.333 -2.045 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.509 4.509 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.260 4.260 11 O -0.225 6.225 12 S 0.248 5.752 13 C -0.270 4.270 14 C -0.118 4.118 15 C -0.137 4.137 16 C -0.131 4.131 17 C -0.080 4.080 18 C 0.058 3.942 19 O -0.388 6.388 20 C -0.072 4.072 21 H 0.083 0.917 22 H 0.219 0.781 23 H 0.161 0.839 24 H 0.181 0.819 25 H 0.163 0.837 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.339 -6.938 -1.236 7.425 hybrid contribution 0.647 2.072 -0.368 2.202 sum 2.987 -4.866 -1.604 5.931 Atomic orbital electron populations 1.69984 1.08585 1.28920 1.37068 1.26324 0.95215 1.03166 0.92942 0.85478 0.79108 0.77723 0.78989 1.18799 1.20522 1.18746 1.18902 0.97371 0.91137 1.43457 0.90202 1.17192 0.97557 0.92205 0.93076 1.22599 1.11226 0.87370 1.04774 1.84817 1.58049 1.29834 1.49837 1.82821 1.48157 1.03518 1.40745 1.22327 1.03422 0.98337 1.02870 1.20777 1.00184 0.92959 0.97870 1.21271 0.95860 1.00367 0.96241 1.20939 1.00282 0.91278 1.00592 1.19729 0.96692 0.95949 0.95589 1.20783 0.91591 0.92691 0.89180 1.86292 1.58100 1.41123 1.53304 1.19310 0.97648 0.93069 0.97187 0.91669 0.78089 0.83894 0.81853 0.83722 0.92885 0.92451 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 11.12 21.78 0.24 -45.07 15 2 C 0.04 1.95 4.79 85.10 0.41 2.36 15 3 Si 0.96 40.62 29.59 68.60 2.03 42.65 15 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 7 C -0.48 -25.71 7.49 23.18 0.17 -25.54 15 8 H 0.08 4.07 5.40 -2.91 -0.02 4.06 15 9 C 0.01 0.49 5.48 -20.70 -0.11 0.38 15 10 C -0.10 -5.16 7.02 67.64 0.47 -4.69 15 11 O -0.42 -21.38 11.01 -85.31 -0.94 -22.32 15 12 S -0.01 -0.38 23.13 -56.49 -1.31 -1.68 15 13 C -0.15 -6.77 6.41 22.90 0.15 -6.62 15 14 C -0.09 -3.30 10.06 22.51 0.23 -3.07 15 15 C -0.12 -3.64 10.03 22.23 0.22 -3.41 15 16 C -0.11 -3.90 9.35 22.16 0.21 -3.70 15 17 C -0.08 -3.31 5.93 -19.43 -0.12 -3.42 15 18 C 0.13 5.20 5.68 71.24 0.40 5.60 15 19 O -0.58 -17.75 12.10 -148.98 -1.80 -19.56 15 20 C -0.06 -3.08 5.97 -20.21 -0.12 -3.20 15 21 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 22 H 0.37 14.81 9.00 -74.05 -0.67 14.15 15 23 H 0.14 4.03 8.06 -2.91 -0.02 4.00 15 24 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 25 H 0.15 4.53 6.96 -2.91 -0.02 4.51 15 26 H 0.05 2.23 7.54 -2.39 -0.02 2.22 15 27 H 0.06 2.26 6.54 -2.38 -0.02 2.25 15 28 H 0.40 8.00 9.12 -74.06 -0.68 7.32 15 Total: -1.00 -66.79 255.45 0.03 -66.75 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.11 Total: 24.55 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 1.91 Total: -45.32 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.24 Total: -45.07 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -2.74 Total: -41.88 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.31 Total: -1.68 kcal Total: -66.79 0.03 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396347068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.187 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds