Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47641 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47025 * 300.00361 * 3 2 1 6 6 H 1.48501 * 109.47360 * 59.99661 * 3 2 1 7 7 C 1.39908 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 158.22547 * 7 2 1 9 9 C 1.40965 * 120.00284 * 338.22319 * 7 2 1 10 10 C 1.42087 * 120.09859 * 321.08595 * 9 7 2 11 11 S 1.75886 * 130.46154 * 0.31853 * 10 9 7 12 12 C 1.75296 * 92.22194 * 179.97438 * 11 10 9 13 13 O 1.35749 * 124.36960 * 179.97438 * 12 11 10 14 14 C 1.32532 * 111.26657 * 359.97438 * 12 11 10 15 15 C 1.39409 * 119.67484 * 180.27749 * 10 9 7 16 16 C 1.41376 * 119.00665 * 0.02562 * 15 10 9 17 17 C 1.37800 * 120.90015 * 359.96014 * 16 15 10 18 18 C 1.37892 * 120.74012 * 0.03807 * 17 16 15 19 19 C 1.50696 * 120.06033 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47191 * 359.97438 * 19 18 17 21 21 H 0.96991 * 120.00432 * 5.45630 * 1 2 3 22 22 H 0.96703 * 113.99754 * 270.03030 * 13 12 11 23 23 H 1.08003 * 122.61899 * 179.97438 * 14 12 11 24 24 H 1.07991 * 119.54969 * 179.97438 * 16 15 10 25 25 H 1.08001 * 119.63421 * 180.02562 * 17 16 15 26 26 H 1.09001 * 109.46926 * 119.97772 * 19 18 17 27 27 H 1.09001 * 109.47312 * 239.98132 * 19 18 17 28 28 H 0.96701 * 114.00111 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2117 -0.0005 8 1 3.0305 -1.2449 -0.3475 9 6 1.3790 -2.3891 0.4518 10 6 0.5101 -2.3462 1.5753 11 16 0.0227 -0.9949 2.5902 12 6 -0.9905 -2.0208 3.5872 13 8 -1.7186 -1.5824 4.6457 14 6 -0.9539 -3.2796 3.1743 15 6 -0.1031 -3.5170 2.0187 16 6 0.1561 -4.7276 1.3360 17 6 1.0000 -4.7593 0.2471 18 6 1.6136 -3.6092 -0.2028 19 6 2.5341 -3.6616 -1.3948 20 8 2.6093 -5.0036 -1.8800 21 1 -0.4850 0.8361 -0.0799 22 1 -1.2445 -1.6108 5.4880 23 1 -1.5114 -4.0676 3.6587 24 1 -0.3139 -5.6398 1.6722 25 1 1.1832 -5.6953 -0.2595 26 1 2.1483 -3.0121 -2.1806 27 1 3.5285 -3.3253 -1.1010 28 1 3.1857 -5.1121 -2.6489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396348882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -59.898416 kcal Electronic energy + Delta-G solvation = -15761.205934 eV Core-core repulsion = 13061.266555 eV Total energy + Delta-G solvation = -2699.939379 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.37733 -37.40761 -35.94224 -34.13518 -32.78510 -30.05487 -28.28926 -25.61290 -24.42421 -21.90186 -21.01290 -19.27540 -18.17102 -17.06168 -16.52218 -15.76173 -15.09575 -14.54020 -14.49656 -14.06133 -14.04382 -13.02819 -12.81079 -12.49717 -12.15285 -11.78063 -11.52631 -11.28296 -11.13725 -10.90699 -10.52548 -10.06752 -9.86530 -9.67635 -9.49277 -9.25430 -8.83938 -8.23551 -7.11317 -6.98538 -6.28765 -4.56824 1.78792 2.56077 2.71305 2.96561 3.03979 3.07190 3.35360 3.41690 3.85322 4.49284 4.80209 5.00746 5.24257 6.00165 6.10133 6.14029 6.29951 6.43995 6.53892 6.65954 6.72311 6.96968 7.18256 7.26594 7.44765 7.68301 7.78996 7.90124 8.04789 8.28129 8.32160 8.61375 8.70629 10.03908 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.013364 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.040886 B = 2094.611752 C = 3759.425111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.087 0.913 9 C 0.159 3.841 10 C -0.157 4.157 11 S 0.103 5.897 12 C -0.016 4.016 13 O -0.467 6.467 14 C -0.159 4.159 15 C -0.049 4.049 16 C -0.203 4.203 17 C -0.058 4.058 18 C -0.190 4.190 19 C 0.148 3.852 20 O -0.578 6.578 21 H 0.288 0.712 22 H 0.379 0.621 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -1.254 2.104 3.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.508 4.508 8 H 0.105 0.895 9 C 0.154 3.846 10 C -0.274 4.274 11 S 0.368 5.632 12 C -0.176 4.176 13 O -0.275 6.275 14 C -0.193 4.193 15 C -0.056 4.056 16 C -0.225 4.225 17 C -0.078 4.078 18 C -0.195 4.195 19 C 0.071 3.929 20 O -0.382 6.382 21 H 0.099 0.901 22 H 0.232 0.768 23 H 0.144 0.856 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.711 0.490 2.343 2.943 hybrid contribution 0.495 -0.602 -0.100 0.786 sum 2.206 -0.112 2.243 3.149 Atomic orbital electron populations 1.69757 1.07550 1.30320 1.31359 1.25852 0.94627 1.01125 0.93098 0.86391 0.81258 0.81250 0.79031 1.18197 1.19788 1.19180 1.19376 1.00235 0.91278 1.39955 0.89478 1.16500 0.88572 0.92052 0.87519 1.22358 1.09254 0.93182 1.02589 1.84000 1.44941 1.11241 1.23065 1.22795 1.02794 0.95836 0.96170 1.84807 1.39942 1.86236 1.16551 1.21296 1.02611 0.95755 0.99684 1.18671 0.97406 0.94207 0.95278 1.20208 1.06739 0.94764 1.00745 1.20224 0.95402 0.97305 0.94861 1.19332 1.06732 0.93949 0.99482 1.20528 0.96927 0.81131 0.94275 1.86447 1.71180 1.30057 1.50528 0.90081 0.76766 0.85594 0.88616 0.87382 0.93375 0.94165 0.78787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.32 10.76 55.55 0.60 -18.72 15 2 C 0.07 1.78 4.22 -17.33 -0.07 1.70 15 3 Si 0.90 18.16 29.62 -169.99 -5.03 13.13 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.40 7.11 56.52 0.40 -4.99 15 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 7 C -0.48 -12.01 8.11 -37.92 -0.31 -12.32 15 8 H 0.09 2.08 7.39 -52.49 -0.39 1.69 15 9 C 0.16 4.11 5.37 -106.56 -0.57 3.54 15 10 C -0.16 -4.02 5.75 -37.67 -0.22 -4.24 15 11 S 0.10 2.42 19.87 -107.50 -2.14 0.28 15 12 C -0.02 -0.35 7.47 28.82 0.22 -0.13 15 13 O -0.47 -8.35 13.64 -18.96 -0.26 -8.61 15 14 C -0.16 -3.43 10.41 -38.62 -0.40 -3.83 15 15 C -0.05 -1.17 6.03 -105.40 -0.64 -1.81 15 16 C -0.20 -4.65 10.10 -38.55 -0.39 -5.04 15 17 C -0.06 -1.35 9.32 -39.87 -0.37 -1.72 15 18 C -0.19 -4.56 5.94 -103.92 -0.62 -5.17 15 19 C 0.15 2.99 6.36 36.00 0.23 3.22 15 20 O -0.58 -10.25 12.13 -35.23 -0.43 -10.68 15 21 H 0.29 6.69 8.31 -40.82 -0.34 6.35 15 22 H 0.38 4.62 9.06 45.56 0.41 5.04 15 23 H 0.13 2.38 8.06 -52.48 -0.42 1.95 15 24 H 0.10 1.93 8.06 -52.49 -0.42 1.51 15 25 H 0.11 2.31 6.98 -52.49 -0.37 1.95 15 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.04 0.77 7.83 -51.93 -0.41 0.36 15 28 H 0.37 4.38 9.12 45.56 0.42 4.80 15 LS Contribution 259.35 15.07 3.91 3.91 Total: -1.00 -29.79 259.35 -7.23 -37.02 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.73 Total: 9.48 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -3.14 Total: -25.80 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.60 Total: -18.72 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.69 Total: -19.29 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.14 Total: 0.28 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.79 -7.23 -37.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396348882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.883 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds