Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47641 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47025 * 300.00361 * 3 2 1 6 6 H 1.48501 * 109.47360 * 59.99661 * 3 2 1 7 7 C 1.39908 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 158.22547 * 7 2 1 9 9 C 1.40965 * 120.00284 * 338.22319 * 7 2 1 10 10 C 1.42087 * 120.09859 * 321.08595 * 9 7 2 11 11 S 1.75886 * 130.46154 * 0.31853 * 10 9 7 12 12 C 1.75296 * 92.22194 * 179.97438 * 11 10 9 13 13 O 1.35749 * 124.36960 * 179.97438 * 12 11 10 14 14 C 1.32532 * 111.26657 * 359.97438 * 12 11 10 15 15 C 1.39409 * 119.67484 * 180.27749 * 10 9 7 16 16 C 1.41376 * 119.00665 * 0.02562 * 15 10 9 17 17 C 1.37800 * 120.90015 * 359.96014 * 16 15 10 18 18 C 1.37892 * 120.74012 * 0.03807 * 17 16 15 19 19 C 1.50696 * 120.06033 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47191 * 359.97438 * 19 18 17 21 21 H 0.96991 * 120.00432 * 5.45630 * 1 2 3 22 22 H 0.96703 * 113.99754 * 270.03030 * 13 12 11 23 23 H 1.08003 * 122.61899 * 179.97438 * 14 12 11 24 24 H 1.07991 * 119.54969 * 179.97438 * 16 15 10 25 25 H 1.08001 * 119.63421 * 180.02562 * 17 16 15 26 26 H 1.09001 * 109.46926 * 119.97772 * 19 18 17 27 27 H 1.09001 * 109.47312 * 239.98132 * 19 18 17 28 28 H 0.96701 * 114.00111 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2117 -0.0005 8 1 3.0305 -1.2449 -0.3475 9 6 1.3790 -2.3891 0.4518 10 6 0.5101 -2.3462 1.5753 11 16 0.0227 -0.9949 2.5902 12 6 -0.9905 -2.0208 3.5872 13 8 -1.7186 -1.5824 4.6457 14 6 -0.9539 -3.2796 3.1743 15 6 -0.1031 -3.5170 2.0187 16 6 0.1561 -4.7276 1.3360 17 6 1.0000 -4.7593 0.2471 18 6 1.6136 -3.6092 -0.2028 19 6 2.5341 -3.6616 -1.3948 20 8 2.6093 -5.0036 -1.8800 21 1 -0.4850 0.8361 -0.0799 22 1 -1.2445 -1.6108 5.4880 23 1 -1.5114 -4.0676 3.6587 24 1 -0.3139 -5.6398 1.6722 25 1 1.1832 -5.6953 -0.2595 26 1 2.1483 -3.0121 -2.1806 27 1 3.5285 -3.3253 -1.1010 28 1 3.1857 -5.1121 -2.6489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396348882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -81.452307 kcal Electronic energy + Delta-G solvation = -15762.140581 eV Core-core repulsion = 13061.266555 eV Total energy + Delta-G solvation = -2700.874026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08858 -38.95998 -37.43803 -35.88550 -34.47698 -31.84791 -29.96489 -27.40761 -26.10162 -23.65447 -22.69777 -21.00117 -19.85262 -18.72667 -18.05187 -17.43909 -16.79573 -16.18179 -16.11376 -15.75128 -15.59697 -14.70773 -14.54464 -14.11841 -13.85827 -13.47810 -13.19710 -12.96083 -12.79227 -12.60959 -12.12464 -11.72305 -11.56051 -11.36513 -11.20329 -10.83733 -10.56959 -10.02798 -8.87692 -8.77825 -8.07943 -6.42568 0.08026 0.84528 0.92339 1.32797 1.39295 1.50578 1.63376 1.65249 2.18334 2.70413 3.30217 3.42759 3.61809 4.35965 4.41800 4.51088 4.69573 4.83549 4.84892 4.96357 5.04183 5.17483 5.43107 5.52221 5.70496 5.89210 6.03159 6.27306 6.44526 6.62885 6.80728 6.86958 7.09530 8.27713 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.013364 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.040886 B = 2094.611752 C = 3759.425111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.042 3.958 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.089 0.911 9 C 0.128 3.872 10 C -0.189 4.189 11 S 0.076 5.924 12 C 0.000 4.000 13 O -0.464 6.464 14 C -0.167 4.167 15 C -0.068 4.068 16 C -0.206 4.206 17 C -0.068 4.068 18 C -0.209 4.209 19 C 0.158 3.842 20 O -0.584 6.584 21 H 0.292 0.708 22 H 0.408 0.592 23 H 0.156 0.844 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -1.500 2.577 3.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.107 0.893 9 C 0.122 3.878 10 C -0.305 4.305 11 S 0.339 5.661 12 C -0.160 4.160 13 O -0.276 6.276 14 C -0.200 4.200 15 C -0.076 4.076 16 C -0.227 4.227 17 C -0.088 4.088 18 C -0.213 4.213 19 C 0.081 3.919 20 O -0.392 6.392 21 H 0.102 0.898 22 H 0.266 0.734 23 H 0.173 0.827 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.825 0.217 2.819 3.365 hybrid contribution 0.421 -0.633 -0.195 0.785 sum 2.246 -0.416 2.624 3.479 Atomic orbital electron populations 1.69815 1.08900 1.31193 1.32425 1.26504 0.95119 1.03725 0.92224 0.85496 0.80175 0.77416 0.79161 1.17651 1.18822 1.19132 1.19556 1.00454 0.92020 1.40991 0.89317 1.16911 0.89510 0.93114 0.88233 1.22647 1.10249 0.94319 1.03275 1.83869 1.46246 1.12132 1.23864 1.22644 1.01720 0.95015 0.96581 1.84739 1.39841 1.85787 1.17227 1.21473 1.02715 0.96698 0.99139 1.19112 0.97910 0.94269 0.96269 1.20594 1.06255 0.95494 1.00345 1.20475 0.95415 0.97695 0.95166 1.19849 1.07172 0.93823 1.00504 1.20290 0.96464 0.82161 0.92951 1.86370 1.72255 1.28454 1.52116 0.89754 0.73420 0.82662 0.85956 0.85879 0.93881 0.93297 0.75702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.85 10.76 21.82 0.23 -40.61 15 2 C 0.04 2.04 4.22 85.24 0.36 2.40 15 3 Si 0.96 37.17 29.62 68.60 2.03 39.20 15 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 15 5 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 6 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 7 C -0.50 -25.47 8.11 23.34 0.19 -25.28 15 8 H 0.09 4.29 7.39 -2.91 -0.02 4.27 15 9 C 0.13 6.70 5.37 -21.12 -0.11 6.59 15 10 C -0.19 -9.74 5.75 23.51 0.14 -9.60 15 11 S 0.08 3.54 19.87 -56.49 -1.12 2.42 15 12 C 0.00 0.02 7.47 66.68 0.50 0.52 15 13 O -0.46 -15.35 13.64 -90.74 -1.24 -16.59 15 14 C -0.17 -6.91 10.41 22.98 0.24 -6.67 15 15 C -0.07 -3.27 6.03 -20.37 -0.12 -3.39 15 16 C -0.21 -9.20 10.10 22.94 0.23 -8.96 15 17 C -0.07 -3.09 9.32 22.08 0.21 -2.88 15 18 C -0.21 -10.03 5.94 -19.41 -0.12 -10.15 15 19 C 0.16 6.31 6.36 71.23 0.45 6.76 15 20 O -0.58 -19.72 12.13 -148.98 -1.81 -21.53 15 21 H 0.29 13.74 8.31 -92.71 -0.77 12.97 15 22 H 0.41 8.63 9.06 -74.05 -0.67 7.96 15 23 H 0.16 5.40 8.06 -2.91 -0.02 5.38 15 24 H 0.12 4.67 8.06 -2.92 -0.02 4.65 15 25 H 0.12 5.10 6.98 -2.91 -0.02 5.07 15 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.05 1.84 7.83 -2.39 -0.02 1.83 15 28 H 0.39 8.50 9.12 -74.06 -0.68 7.82 15 Total: -1.00 -63.44 259.35 -0.06 -63.51 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.12 Total: 24.28 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 1.96 Total: -50.67 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.23 Total: -40.61 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -3.04 Total: -38.11 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.12 Total: 2.42 kcal Total: -63.44 -0.06 -63.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396348882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.947 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds