Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30949 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47512 * 270.00076 * 3 2 1 5 5 H 1.48495 * 109.47125 * 30.00138 * 3 2 1 6 6 H 1.48506 * 109.47209 * 150.00199 * 3 2 1 7 7 C 1.39786 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00373 * 163.10141 * 7 2 1 9 9 C 1.40923 * 119.99587 * 343.10089 * 7 2 1 10 10 C 1.40501 * 120.19782 * 334.38337 * 9 7 2 11 11 C 1.38610 * 120.01127 * 180.02562 * 10 9 7 12 12 S 1.76049 * 130.36301 * 179.97438 * 11 10 9 13 13 C 1.75461 * 91.59012 * 180.02562 * 12 11 10 14 14 O 1.35510 * 124.63311 * 179.97438 * 13 12 11 15 15 C 1.33530 * 110.74453 * 0.06493 * 13 12 11 16 16 C 1.40169 * 115.72859 * 359.95323 * 15 13 12 17 17 C 1.42072 * 128.53669 * 180.02562 * 16 15 13 18 18 C 1.50700 * 119.57995 * 0.24430 * 17 16 15 19 19 O 1.42897 * 109.47133 * 179.73051 * 18 17 16 20 20 C 1.35213 * 120.84432 * 179.97438 * 17 16 15 21 21 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99350 * 0.04530 * 10 9 7 23 23 H 0.96698 * 114.00432 * 270.08056 * 14 13 12 24 24 H 1.07997 * 122.13129 * 179.97438 * 15 13 12 25 25 H 1.08996 * 109.47536 * 299.73838 * 18 17 16 26 26 H 1.09002 * 109.46736 * 59.73419 * 18 17 16 27 27 H 0.96709 * 113.99776 * 180.02562 * 19 18 17 28 28 H 1.07999 * 119.81032 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 2.4910 2.0465 -1.4000 5 1 1.4409 2.6526 0.7000 6 1 3.5411 1.4402 0.7000 7 6 2.0085 -1.2105 -0.0005 8 1 3.0535 -1.2306 -0.2724 9 6 1.3495 -2.4048 0.3537 10 6 0.2234 -2.3683 1.1931 11 6 -0.4215 -3.5453 1.5395 12 16 -1.8327 -3.8154 2.5568 13 6 -1.7472 -5.5489 2.2994 14 8 -2.6050 -6.4504 2.8359 15 6 -0.7203 -5.8590 1.5042 16 6 0.0491 -4.7771 1.0543 17 6 1.1895 -4.7937 0.2071 18 6 1.7014 -6.1071 -0.3257 19 8 2.8431 -5.8732 -1.1526 20 6 1.8181 -3.6455 -0.1317 21 1 -0.4850 0.8400 0.0004 22 1 -0.1400 -1.4230 1.5682 23 1 -2.3300 -6.7901 3.6984 24 1 -0.4970 -6.8781 1.2253 25 1 1.9817 -6.7525 0.5067 26 1 0.9204 -6.5902 -0.9129 27 1 3.2259 -6.6766 -1.5311 28 1 2.6838 -3.6775 -0.7766 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396350935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = -82.799916 kcal Electronic energy + Delta-G solvation = -15445.979710 eV Core-core repulsion = 12745.047247 eV Total energy + Delta-G solvation = -2700.932463 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40968 -38.80643 -37.54953 -36.32869 -34.21593 -32.11708 -30.27787 -27.27938 -26.13268 -24.12016 -22.35393 -21.48549 -19.24858 -19.08481 -18.21244 -17.54920 -16.96143 -16.23072 -16.15043 -15.77998 -15.54632 -14.94430 -14.54985 -14.25154 -13.85613 -13.42434 -13.31197 -12.94211 -12.70339 -12.65376 -12.22638 -11.66531 -11.58578 -11.37847 -11.23707 -11.09182 -10.78665 -10.09729 -9.11555 -8.75493 -8.44359 -6.38354 0.01400 0.72410 0.89879 1.27915 1.29270 1.38346 1.53058 1.71392 2.16086 2.62214 3.42029 3.49134 3.52937 4.15493 4.46198 4.49566 4.62300 4.66108 4.93092 4.95911 5.06032 5.21774 5.30322 5.45125 5.80737 5.90446 5.99677 6.09438 6.48354 6.70083 6.75143 6.83516 7.06420 8.18802 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.008063 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.393004 B = 3471.968597 C = 4704.869526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.032 3.968 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.467 4.467 8 H 0.089 0.911 9 C 0.096 3.904 10 C -0.188 4.188 11 C -0.089 4.089 12 S -0.012 6.012 13 C -0.036 4.036 14 O -0.455 6.455 15 C -0.099 4.099 16 C -0.205 4.205 17 C -0.039 4.039 18 C 0.128 3.872 19 O -0.584 6.584 20 C -0.186 4.186 21 H 0.293 0.707 22 H 0.103 0.897 23 H 0.401 0.599 24 H 0.160 0.840 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.398 0.602 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -8.149 2.210 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.496 4.496 8 H 0.107 0.893 9 C 0.090 3.910 10 C -0.214 4.214 11 C -0.204 4.204 12 S 0.246 5.754 13 C -0.194 4.194 14 O -0.266 6.266 15 C -0.130 4.130 16 C -0.211 4.211 17 C -0.041 4.041 18 C 0.051 3.949 19 O -0.393 6.393 20 C -0.206 4.206 21 H 0.104 0.896 22 H 0.120 0.880 23 H 0.258 0.742 24 H 0.177 0.823 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.248 0.752 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.009 -6.502 2.699 7.039 hybrid contribution 1.214 -0.541 -0.462 1.407 sum 1.223 -7.043 2.237 7.490 Atomic orbital electron populations 1.69939 1.09351 1.31256 1.32937 1.26935 0.95498 1.05080 0.91020 0.85096 0.79122 0.75119 0.79836 1.18244 1.19080 1.17743 1.19923 0.98449 0.91985 1.39232 0.89255 1.17878 0.91169 0.93483 0.88434 1.20420 1.01605 0.94550 1.04871 1.22352 0.97925 0.97798 1.02302 1.83798 1.31243 1.05289 1.55025 1.21694 0.98836 0.90426 1.08463 1.84741 1.46115 1.55890 1.39823 1.20308 0.93831 0.99835 0.99021 1.17431 1.01891 0.91693 1.10042 1.19355 0.93550 0.95519 0.95689 1.20802 0.87747 0.92715 0.93633 1.86496 1.46376 1.38266 1.68147 1.20678 1.03329 0.92075 1.04481 0.89604 0.87954 0.74196 0.82292 0.90595 0.91295 0.75185 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.25 10.96 21.80 0.24 -42.01 15 2 C 0.03 1.57 5.14 85.20 0.44 2.00 15 3 Si 0.99 36.92 29.59 68.60 2.03 38.95 15 4 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 6 H -0.25 -9.22 7.11 99.48 0.71 -8.52 15 7 C -0.47 -24.66 9.02 23.30 0.21 -24.45 15 8 H 0.09 4.45 7.90 -2.91 -0.02 4.43 15 9 C 0.10 5.23 5.56 -21.33 -0.12 5.12 15 10 C -0.19 -10.28 8.70 22.91 0.20 -10.08 15 11 C -0.09 -4.41 6.45 22.91 0.15 -4.26 15 12 S -0.01 -0.50 23.29 -56.49 -1.32 -1.81 15 13 C -0.04 -1.31 7.53 66.75 0.50 -0.81 15 14 O -0.46 -13.51 13.63 -88.12 -1.20 -14.71 15 15 C -0.10 -3.66 9.72 21.67 0.21 -3.45 15 16 C -0.21 -9.18 5.85 -21.31 -0.12 -9.31 15 17 C -0.04 -1.69 5.90 -19.61 -0.12 -1.81 15 18 C 0.13 4.04 6.87 71.24 0.49 4.53 15 19 O -0.58 -17.68 12.05 -148.98 -1.80 -19.48 15 20 C -0.19 -9.21 9.02 22.31 0.20 -9.01 15 21 H 0.29 13.74 8.30 -92.71 -0.77 12.97 15 22 H 0.10 5.88 6.18 -2.91 -0.02 5.86 15 23 H 0.40 7.41 9.06 -74.06 -0.67 6.74 15 24 H 0.16 4.70 7.89 -2.91 -0.02 4.68 15 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.07 1.91 8.14 -2.39 -0.02 1.90 15 27 H 0.40 6.87 9.12 -74.05 -0.68 6.19 15 28 H 0.11 5.53 6.88 -2.91 -0.02 5.51 15 Total: -1.00 -66.06 262.22 -0.12 -66.18 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.12 Total: 24.42 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 2.04 Total: -51.54 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.24 Total: -42.01 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -3.00 Total: -34.19 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.32 Total: -1.81 kcal Total: -66.06 -0.12 -66.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.622 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds