Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86799 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47373 * 299.99729 * 3 2 1 6 6 H 1.48507 * 109.47363 * 59.99901 * 3 2 1 7 7 C 1.39808 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99900 * 198.01012 * 7 2 1 9 9 C 1.40958 * 119.99944 * 18.01411 * 7 2 1 10 10 C 1.41274 * 120.20089 * 204.71121 * 9 7 2 11 11 C 1.35171 * 120.38432 * 180.02562 * 10 9 7 12 12 C 1.42002 * 120.87382 * 0.02562 * 11 10 9 13 13 C 1.40610 * 128.60634 * 179.97438 * 12 11 10 14 14 O 1.36123 * 122.12478 * 0.02942 * 13 12 11 15 15 C 1.32997 * 115.75010 * 179.97438 * 13 12 11 16 16 C 1.50696 * 124.58933 * 180.02562 * 15 13 12 17 17 O 1.42897 * 109.46869 * 90.00717 * 16 15 13 18 18 S 1.75462 * 110.81653 * 0.27274 * 15 13 12 19 19 C 1.40377 * 119.02319 * 359.97438 * 12 11 10 20 20 C 1.38850 * 120.14567 * 0.02562 * 19 12 11 21 21 H 0.97002 * 119.99810 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.80568 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.56267 * 180.02562 * 11 10 9 24 24 H 0.96697 * 113.99760 * 269.99513 * 14 13 12 25 25 H 1.08999 * 109.47687 * 330.00497 * 16 15 13 26 26 H 1.09007 * 109.47213 * 210.00405 * 16 15 13 27 27 H 0.96701 * 114.00064 * 179.97438 * 17 16 15 28 28 H 1.07992 * 120.01033 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7032 1.3464 0.0006 5 1 1.8846 2.3965 -1.2125 6 1 1.8845 2.3965 1.2125 7 6 2.0083 -1.2108 0.0005 8 1 3.0486 -1.2336 0.2897 9 6 1.3553 -2.4018 -0.3764 10 6 1.8264 -3.6490 0.0907 11 6 1.2034 -4.7934 -0.2689 12 6 0.0673 -4.7680 -1.1205 13 6 -0.6988 -5.8480 -1.5936 14 8 -0.4148 -7.1373 -1.2618 15 6 -1.7192 -5.5297 -2.3850 16 6 -2.6672 -6.5260 -3.0010 17 8 -3.7709 -6.7414 -2.1193 18 16 -1.8077 -3.7932 -2.6203 19 6 -0.4058 -3.5319 -1.5881 20 6 0.2335 -2.3558 -1.2193 21 1 -0.4850 0.8401 -0.0004 22 1 2.6894 -3.6883 0.7389 23 1 1.5745 -5.7396 0.0963 24 1 0.1949 -7.5751 -1.8714 25 1 -2.1460 -7.4687 -3.1677 26 1 -3.0325 -6.1397 -3.9527 27 1 -4.4231 -7.3728 -2.4525 28 1 -0.1321 -1.4061 -1.5806 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396351027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = -62.360475 kcal Electronic energy + Delta-G solvation = -15370.507796 eV Core-core repulsion = 12670.461654 eV Total energy + Delta-G solvation = -2700.046142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.93351 -37.07776 -36.20626 -34.20415 -32.46361 -29.63756 -29.49292 -26.71725 -24.05019 -22.02083 -20.92050 -19.56585 -17.72146 -17.24619 -16.69102 -16.51535 -15.48821 -14.80916 -14.58404 -13.97816 -13.54602 -13.26053 -12.78069 -12.42999 -12.31424 -11.95779 -11.62235 -11.29321 -11.26198 -10.87518 -10.61370 -10.23152 -9.98976 -9.90178 -9.67360 -9.45010 -9.18092 -8.40236 -7.44580 -7.05091 -6.65653 -4.56641 1.68296 2.56058 2.71236 2.83304 2.94583 2.99792 3.01387 3.29786 3.72715 4.34872 4.81969 4.97345 5.38513 5.42484 5.51045 5.74402 6.00551 6.35603 6.65778 6.67984 6.78099 6.88109 7.08867 7.18510 7.56108 7.59238 7.72832 7.87851 7.92107 8.19769 8.28671 8.55001 8.63184 9.86645 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.038908 B = 0.006241 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.469059 B = 4485.534637 C = 5046.752605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.128 3.872 10 C -0.198 4.198 11 C -0.041 4.041 12 C -0.240 4.240 13 C 0.176 3.824 14 O -0.490 6.490 15 C -0.288 4.288 16 C 0.171 3.829 17 O -0.565 6.565 18 S 0.038 5.962 19 C -0.061 4.061 20 C -0.164 4.164 21 H 0.288 0.712 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.377 0.623 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.369 0.631 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -5.611 -5.132 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.121 3.879 10 C -0.217 4.217 11 C -0.062 4.062 12 C -0.245 4.245 13 C 0.120 3.880 14 O -0.299 6.299 15 C -0.403 4.403 16 C 0.092 3.908 17 O -0.370 6.370 18 S 0.298 5.702 19 C -0.176 4.176 20 C -0.190 4.190 21 H 0.099 0.901 22 H 0.122 0.878 23 H 0.116 0.884 24 H 0.231 0.769 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.215 0.785 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.955 -4.078 -5.110 6.824 hybrid contribution 1.158 -0.671 0.172 1.349 sum -0.797 -4.749 -4.938 6.897 Atomic orbital electron populations 1.69883 1.07816 1.30111 1.31200 1.26082 0.94866 1.02005 0.92176 0.86138 0.80964 0.80133 0.78943 1.18038 1.19322 1.19618 1.19732 0.98463 0.91111 1.36724 0.89384 1.17525 0.90409 0.92146 0.87806 1.20705 1.03108 0.92795 1.05086 1.20174 0.93434 0.97154 0.95408 1.17739 1.03359 0.91345 1.12049 1.17059 0.93868 0.83286 0.93830 1.84834 1.68139 1.23015 1.53901 1.23180 1.05632 0.97577 1.13890 1.19994 0.85609 0.94875 0.90296 1.86698 1.35521 1.66785 1.47974 1.83530 1.32748 0.99586 1.54297 1.22102 0.97756 0.97108 1.00628 1.20557 1.00544 0.94537 1.03409 0.90125 0.87827 0.88378 0.76862 0.93098 0.93711 0.78522 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.90 10.97 55.54 0.61 -18.29 15 2 C 0.07 1.64 5.12 -17.35 -0.09 1.56 15 3 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 15 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 15 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.65 15 7 C -0.43 -10.63 9.02 -37.97 -0.34 -10.97 15 8 H 0.09 2.03 7.91 -52.48 -0.41 1.61 15 9 C 0.13 3.26 5.56 -106.90 -0.59 2.66 15 10 C -0.20 -4.63 9.68 -39.52 -0.38 -5.01 15 11 C -0.04 -0.94 9.91 -39.23 -0.39 -1.32 15 12 C -0.24 -5.71 5.89 -106.76 -0.63 -6.34 15 13 C 0.18 3.79 6.70 -40.50 -0.27 3.52 15 14 O -0.49 -9.05 13.02 -20.13 -0.26 -9.31 15 15 C -0.29 -5.93 6.07 -36.13 -0.22 -6.15 15 16 C 0.17 2.78 7.32 36.00 0.26 3.05 15 17 O -0.56 -9.43 13.64 -35.23 -0.48 -9.91 15 18 S 0.04 0.83 23.26 -107.50 -2.50 -1.68 15 19 C -0.06 -1.51 6.46 -38.55 -0.25 -1.76 15 20 C -0.16 -4.25 8.72 -38.55 -0.34 -4.59 15 21 H 0.29 6.37 8.30 -40.82 -0.34 6.03 15 22 H 0.10 2.18 8.06 -52.49 -0.42 1.76 15 23 H 0.10 1.96 8.06 -52.49 -0.42 1.53 15 24 H 0.38 4.88 9.07 45.56 0.41 5.29 15 25 H 0.05 0.72 7.88 -51.93 -0.41 0.31 15 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.37 3.83 9.12 45.56 0.42 4.24 15 28 H 0.12 3.31 6.16 -52.49 -0.32 2.99 15 LS Contribution 264.95 15.07 3.99 3.99 Total: -1.00 -30.32 264.95 -7.63 -37.95 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.72 Total: 10.34 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.24 Total: -25.35 kcal Atomic # 7 Polarization: -18.90 SS G_CDS: 0.61 Total: -18.29 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.74 Total: -19.23 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.32 -7.63 -37.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396351027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.407 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds