Wall clock time and date at job start Mon Mar 30 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86796 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47214 * 300.00682 * 3 2 1 6 6 H 1.48498 * 109.47168 * 60.00082 * 3 2 1 7 7 C 1.39915 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99856 * 170.24891 * 7 2 1 9 9 C 1.40531 * 119.99991 * 350.24408 * 7 2 1 10 10 C 1.40406 * 120.41791 * 326.75867 * 9 7 2 11 11 C 1.37486 * 120.12160 * 180.02562 * 10 9 7 12 12 C 1.38330 * 121.11139 * 0.02562 * 11 10 9 13 13 C 1.39320 * 121.48599 * 359.96672 * 12 11 10 14 14 S 1.76070 * 130.52751 * 180.02562 * 13 12 11 15 15 C 1.75499 * 91.55735 * 179.82475 * 14 13 12 16 16 O 1.35545 * 124.70803 * 180.20393 * 15 14 13 17 17 C 1.33673 * 110.58751 * 0.31055 * 15 14 13 18 18 C 1.50696 * 122.17285 * 179.89452 * 17 15 14 19 19 O 1.42897 * 109.47131 * 263.35975 * 18 17 15 20 20 C 1.39747 * 115.65790 * 359.62324 * 17 15 14 21 21 H 0.96997 * 120.00063 * 359.97438 * 1 2 3 22 22 H 1.07999 * 119.93389 * 359.97438 * 10 9 7 23 23 H 1.08007 * 119.44493 * 179.97438 * 11 10 9 24 24 H 1.08000 * 119.25437 * 179.97438 * 12 11 10 25 25 H 0.96697 * 114.00290 * 270.12044 * 16 15 14 26 26 H 1.09003 * 109.47461 * 143.35543 * 18 17 15 27 27 H 1.09001 * 109.46723 * 23.36215 * 18 17 15 28 28 H 0.96700 * 113.99948 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8841 2.3964 1.2125 7 6 2.0086 -1.2117 -0.0005 8 1 3.0769 -1.2183 -0.1590 9 6 1.3212 -2.4200 0.2051 10 6 0.2002 -2.4654 1.0494 11 6 -0.4674 -3.6510 1.2467 12 6 -0.0546 -4.8157 0.6250 13 6 1.0499 -4.8354 -0.2240 14 16 1.7750 -6.1613 -1.1275 15 6 3.0035 -5.0992 -1.7929 16 8 3.9793 -5.4891 -2.6491 17 6 2.8449 -3.8529 -1.3364 18 6 3.7618 -2.7274 -1.7409 19 8 4.7689 -2.5514 -0.7426 20 6 1.7700 -3.6602 -0.4644 21 1 -0.4850 0.8400 0.0004 22 1 -0.1376 -1.5675 1.5453 23 1 -1.3281 -3.6735 1.8987 24 1 -0.6010 -5.7304 0.8016 25 1 4.7898 -5.7858 -2.2131 26 1 3.1855 -1.8077 -1.8418 27 1 4.2329 -2.9674 -2.6940 28 1 5.3963 -1.8419 -0.9376 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396351062.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:32 Heat of formation + Delta-G solvation = -74.934939 kcal Electronic energy + Delta-G solvation = -15959.923129 eV Core-core repulsion = 13259.331717 eV Total energy + Delta-G solvation = -2700.591412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38302 -38.65715 -37.43758 -35.89355 -34.74599 -31.71736 -29.72585 -27.77085 -26.55609 -23.45493 -22.86422 -20.64894 -19.96174 -18.68119 -18.22415 -17.61314 -17.15085 -16.52702 -16.10962 -15.81186 -14.97207 -14.66980 -14.63102 -14.16264 -13.87154 -13.47560 -13.13963 -13.08727 -12.75604 -12.43544 -12.11282 -11.61762 -11.42804 -11.40249 -11.17497 -11.12518 -10.78091 -9.94936 -9.01060 -8.74073 -8.50905 -6.33812 -0.05404 0.69202 0.86203 1.16447 1.40427 1.46446 1.55816 1.59118 2.17101 2.65077 3.38239 3.52503 3.83141 4.26145 4.32969 4.44795 4.64179 4.70635 4.82363 5.06851 5.12208 5.27950 5.33830 5.49830 5.79065 5.98823 6.03789 6.14787 6.55841 6.64507 6.75556 6.87196 6.97730 8.21958 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.009979 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.770364 B = 2805.310878 C = 3849.048455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.108 0.892 9 C 0.129 3.871 10 C -0.207 4.207 11 C -0.065 4.065 12 C -0.231 4.231 13 C -0.097 4.097 14 S 0.028 5.972 15 C -0.038 4.038 16 O -0.451 6.451 17 C -0.076 4.076 18 C 0.137 3.863 19 O -0.574 6.574 20 C -0.194 4.194 21 H 0.293 0.707 22 H 0.109 0.891 23 H 0.125 0.875 24 H 0.115 0.885 25 H 0.397 0.603 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -0.995 -1.575 6.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.169 1.169 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.126 0.874 9 C 0.124 3.876 10 C -0.229 4.229 11 C -0.086 4.086 12 C -0.256 4.256 13 C -0.212 4.212 14 S 0.289 5.711 15 C -0.198 4.198 16 O -0.261 6.261 17 C -0.090 4.090 18 C 0.058 3.942 19 O -0.382 6.382 20 C -0.200 4.200 21 H 0.104 0.896 22 H 0.127 0.873 23 H 0.143 0.857 24 H 0.133 0.867 25 H 0.254 0.746 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.709 -2.767 -1.990 5.813 hybrid contribution 0.784 2.247 0.248 2.393 sum 5.493 -0.520 -1.743 5.786 Atomic orbital electron populations 1.69894 1.09182 1.31227 1.33142 1.26977 0.95639 1.04811 0.91276 0.85083 0.79935 0.75464 0.78996 1.16937 1.19050 1.18998 1.20204 0.97513 0.90459 1.40255 0.87444 1.18828 0.91128 0.90426 0.87183 1.21041 1.00983 0.97191 1.03648 1.20810 0.98045 0.92114 0.97643 1.19825 1.00435 0.98665 1.06701 1.22395 1.01040 0.95644 1.02143 1.83342 1.29284 1.11925 1.46564 1.21563 0.99206 0.93347 1.05639 1.84700 1.25211 1.84585 1.31597 1.18965 0.97242 0.94892 0.97885 1.20686 0.88164 0.95610 0.89722 1.86515 1.43742 1.59475 1.48480 1.19052 1.00722 0.95255 1.04970 0.89566 0.87309 0.85698 0.86650 0.74599 0.91609 0.92005 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.51 11.10 21.83 0.24 -39.27 15 2 C 0.03 1.39 5.24 85.24 0.45 1.84 15 3 Si 0.99 34.42 29.57 68.60 2.03 36.45 15 4 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 5 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15 6 H -0.27 -9.05 7.11 99.48 0.71 -8.34 15 7 C -0.46 -22.70 7.23 23.24 0.17 -22.53 15 8 H 0.11 5.05 4.71 -2.91 -0.01 5.03 15 9 C 0.13 6.84 5.68 -19.63 -0.11 6.73 15 10 C -0.21 -10.61 8.59 22.62 0.19 -10.42 15 11 C -0.07 -3.00 9.95 22.11 0.22 -2.78 15 12 C -0.23 -10.50 10.01 22.55 0.23 -10.28 15 13 C -0.10 -4.65 6.47 22.94 0.15 -4.50 15 14 S 0.03 1.13 23.29 -56.49 -1.32 -0.19 15 15 C -0.04 -1.57 7.48 66.78 0.50 -1.07 15 16 O -0.45 -15.11 13.02 -88.50 -1.15 -16.26 15 17 C -0.08 -3.44 5.47 -20.54 -0.11 -3.56 15 18 C 0.14 5.32 6.10 71.23 0.43 5.76 15 19 O -0.57 -20.53 12.46 -148.98 -1.86 -22.38 15 20 C -0.19 -9.87 6.01 -19.95 -0.12 -9.99 15 21 H 0.29 12.81 8.30 -92.71 -0.77 12.04 15 22 H 0.11 5.68 6.52 -2.91 -0.02 5.66 15 23 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 24 H 0.12 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.40 9.47 9.06 -74.06 -0.67 8.80 15 26 H 0.07 2.72 5.76 -2.39 -0.01 2.71 15 27 H 0.06 2.08 7.68 -2.39 -0.02 2.07 15 28 H 0.39 9.51 9.12 -74.06 -0.68 8.83 15 Total: -1.00 -61.73 256.26 -0.17 -61.90 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.11 Total: 30.53 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 1.99 Total: -50.78 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.24 Total: -39.27 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -3.01 Total: -38.64 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.32 Total: -0.19 kcal Total: -61.73 -0.17 -61.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396351062.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.040 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds