Wall clock time and date at job start Mon Mar 30 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30915 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48497 * 109.47216 * 274.96704 * 3 2 1 5 5 H 1.48506 * 109.47016 * 34.96378 * 3 2 1 6 6 H 1.48498 * 109.47030 * 154.96512 * 3 2 1 7 7 C 1.39839 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99684 * 195.41337 * 7 2 1 9 9 C 1.41240 * 120.00500 * 15.41959 * 7 2 1 10 10 C 1.41168 * 120.06259 * 25.69898 * 9 7 2 11 11 C 1.35656 * 120.10563 * 180.02562 * 10 9 7 12 12 C 1.40502 * 120.83342 * 359.97438 * 11 10 9 13 13 S 1.75998 * 130.23573 * 180.02562 * 12 11 10 14 14 C 1.75248 * 92.30888 * 180.02562 * 13 12 11 15 15 C 1.31960 * 111.51994 * 359.97438 * 14 13 12 16 16 O 1.36172 * 122.60625 * 180.02562 * 15 14 13 17 17 C 1.40167 * 120.14896 * 0.02562 * 12 11 10 18 18 C 1.39956 * 120.06647 * 205.70926 * 9 7 2 19 19 C 1.50695 * 120.00500 * 359.96539 * 18 9 7 20 20 O 1.42901 * 109.47373 * 270.05100 * 19 18 9 21 21 H 0.96994 * 120.00004 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.94273 * 0.27714 * 10 9 7 23 23 H 1.07997 * 119.58135 * 180.02562 * 11 10 9 24 24 H 1.07997 * 124.23379 * 180.02562 * 14 13 12 25 25 H 0.96703 * 114.00125 * 89.97904 * 16 15 14 26 26 H 1.08998 * 109.46909 * 30.04962 * 19 18 9 27 27 H 1.08994 * 109.47158 * 150.05048 * 19 18 9 28 28 H 0.96692 * 114.00435 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3857 2.1070 -1.3948 5 1 1.4970 2.6201 0.8024 6 1 3.5892 1.4121 0.5925 7 6 2.0083 -1.2111 0.0005 8 1 3.0592 -1.2278 0.2492 9 6 1.3403 -2.4124 -0.3241 10 6 0.1915 -2.3834 -1.1441 11 6 -0.4511 -3.5367 -1.4561 12 6 0.0116 -4.7723 -0.9729 13 16 -0.6190 -6.3970 -1.2181 14 6 0.6414 -7.1115 -0.2322 15 6 1.4657 -6.1948 0.2387 16 8 2.5286 -6.5021 1.0324 17 6 1.1500 -4.8275 -0.1570 18 6 1.8158 -3.6338 0.1666 19 6 3.0421 -3.6683 1.0417 20 8 4.2058 -3.8150 0.2255 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1739 -1.4421 -1.5269 23 1 -1.3289 -3.5047 -2.0844 24 1 0.7326 -8.1694 -0.0354 25 1 3.3446 -6.6808 0.5453 26 1 3.1104 -2.7396 1.6082 27 1 2.9732 -4.5100 1.7308 28 1 5.0343 -3.8444 0.7232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396353249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:09 Heat of formation + Delta-G solvation = -59.840428 kcal Electronic energy + Delta-G solvation = -15888.247010 eV Core-core repulsion = 13188.310145 eV Total energy + Delta-G solvation = -2699.936865 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.89494 -36.95567 -35.65613 -34.13764 -32.24054 -30.59554 -28.52454 -25.75794 -24.42841 -22.33504 -20.28247 -20.09110 -17.57444 -16.59223 -16.47213 -16.29205 -15.50786 -14.71975 -14.60629 -14.03438 -13.61261 -13.00679 -12.58843 -12.51547 -12.19367 -11.66483 -11.45778 -11.40749 -11.11745 -10.85925 -10.62977 -10.20023 -10.03318 -9.91518 -9.31398 -9.26194 -8.94049 -8.26899 -7.43909 -7.01246 -6.71048 -4.52105 1.71363 2.42963 2.50624 2.90844 2.98967 3.03534 3.03642 3.25673 3.81075 4.37342 4.90943 5.17014 5.42620 5.66881 6.00023 6.23811 6.31635 6.39052 6.47746 6.66007 6.79846 6.93064 7.03411 7.37158 7.46085 7.55810 7.81179 8.01283 8.13881 8.35252 8.44441 8.68119 8.72779 9.99396 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.008144 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.864598 B = 3437.318145 C = 4287.219579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.127 3.873 10 C -0.115 4.115 11 C -0.078 4.078 12 C -0.222 4.222 13 S 0.032 5.968 14 C -0.245 4.245 15 C 0.110 3.890 16 O -0.485 6.485 17 C -0.042 4.042 18 C -0.182 4.182 19 C 0.134 3.866 20 O -0.573 6.573 21 H 0.284 0.716 22 H 0.131 0.869 23 H 0.098 0.902 24 H 0.155 0.845 25 H 0.381 0.619 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -4.786 -0.116 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.123 3.877 10 C -0.136 4.136 11 C -0.101 4.101 12 C -0.337 4.337 13 S 0.291 5.709 14 C -0.379 4.379 15 C 0.052 3.948 16 O -0.294 6.294 17 C -0.048 4.048 18 C -0.187 4.187 19 C 0.058 3.942 20 O -0.377 6.377 21 H 0.095 0.905 22 H 0.149 0.851 23 H 0.116 0.884 24 H 0.172 0.828 25 H 0.236 0.764 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.518 -5.181 -0.879 5.280 hybrid contribution 2.131 1.165 0.907 2.593 sum 2.650 -4.016 0.028 4.811 Atomic orbital electron populations 1.69825 1.07633 1.29728 1.34287 1.26021 0.94839 1.01735 0.91992 0.86181 0.80551 0.80061 0.79334 1.19147 1.20135 1.18375 1.19665 0.97700 0.90436 1.39447 0.89515 1.17346 0.90720 0.91660 0.87924 1.21164 0.97175 0.96648 0.98633 1.19839 0.99311 0.90400 1.00515 1.21731 1.03505 0.95589 1.12848 1.83295 1.33278 0.99740 1.54604 1.24694 1.03133 1.02421 1.07681 1.18276 0.90819 0.90705 0.95000 1.84819 1.19809 1.90838 1.33952 1.18836 0.95928 0.91908 0.98116 1.19182 0.99933 0.91190 1.08365 1.20768 0.82959 0.98936 0.91544 1.86652 1.16016 1.96939 1.38070 0.90469 0.85134 0.88396 0.82774 0.76388 0.93458 0.93519 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.31 10.88 55.54 0.60 -18.70 15 2 C 0.07 1.73 5.17 -17.34 -0.09 1.64 15 3 Si 0.91 17.86 29.59 -169.99 -5.03 12.84 15 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 7 C -0.44 -11.26 8.10 -37.84 -0.31 -11.57 15 8 H 0.09 2.16 6.82 -52.48 -0.36 1.80 15 9 C 0.13 3.32 5.55 -107.00 -0.59 2.72 15 10 C -0.12 -2.91 8.59 -39.39 -0.34 -3.24 15 11 C -0.08 -1.83 9.99 -39.65 -0.40 -2.23 15 12 C -0.22 -5.15 6.51 -38.01 -0.25 -5.40 15 13 S 0.03 0.62 23.23 -107.50 -2.50 -1.88 15 14 C -0.25 -4.55 10.97 28.82 0.32 -4.23 15 15 C 0.11 2.27 6.83 -38.47 -0.26 2.00 15 16 O -0.48 -8.71 11.22 -20.29 -0.23 -8.93 15 17 C -0.04 -0.99 5.97 -105.31 -0.63 -1.62 15 18 C -0.18 -4.51 5.63 -103.15 -0.58 -5.09 15 19 C 0.13 2.87 6.10 36.00 0.22 3.09 15 20 O -0.57 -11.24 13.64 -35.23 -0.48 -11.72 15 21 H 0.28 6.29 8.30 -40.82 -0.34 5.95 15 22 H 0.13 3.29 6.15 -52.49 -0.32 2.97 15 23 H 0.10 2.03 8.06 -52.49 -0.42 1.61 15 24 H 0.15 2.37 8.06 -52.49 -0.42 1.95 15 25 H 0.38 5.31 9.07 45.56 0.41 5.72 15 26 H 0.05 1.02 6.73 -51.93 -0.35 0.67 15 27 H 0.05 0.95 6.06 -51.93 -0.31 0.63 15 28 H 0.36 4.94 9.12 45.56 0.42 5.36 15 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -28.90 257.63 -7.15 -36.05 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.50 Total: 12.39 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.91 Total: -23.92 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.60 Total: -18.70 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.71 Total: -20.66 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.50 Total: -1.88 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.90 -7.15 -36.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396353249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.792 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds