Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30955 * 1 3 3 Si 1.86801 * 120.00016 * 2 1 4 4 H 1.48498 * 109.47419 * 239.99710 * 3 2 1 5 5 H 1.48504 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47120 * 119.99649 * 3 2 1 7 7 C 1.39782 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00552 * 197.85731 * 7 2 1 9 9 C 1.40918 * 119.99547 * 17.85981 * 7 2 1 10 10 C 1.41280 * 120.19549 * 204.67882 * 9 7 2 11 11 C 1.35171 * 120.36996 * 180.02562 * 10 9 7 12 12 C 1.42104 * 120.84942 * 359.97438 * 11 10 9 13 13 C 1.40474 * 119.01272 * 0.20162 * 12 11 10 14 14 C 1.38649 * 120.15054 * 0.05531 * 13 12 11 15 15 S 1.76046 * 109.49026 * 180.25819 * 13 12 11 16 16 C 1.75474 * 91.58643 * 359.76691 * 15 13 12 17 17 O 1.35506 * 124.63473 * 179.97438 * 16 15 13 18 18 C 1.33519 * 110.73351 * 359.97438 * 16 15 13 19 19 C 1.50702 * 122.13281 * 179.97438 * 18 16 15 20 20 O 1.42899 * 109.47056 * 90.02601 * 19 18 16 21 21 H 0.96997 * 120.00087 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.81238 * 0.02562 * 10 9 7 23 23 H 1.08002 * 119.57445 * 179.97438 * 11 10 9 24 24 H 1.08005 * 119.99430 * 180.26112 * 14 13 12 25 25 H 0.96702 * 113.99780 * 270.02280 * 17 16 15 26 26 H 1.08998 * 109.47060 * 330.02747 * 19 18 16 27 27 H 1.09000 * 109.47420 * 210.02811 * 19 18 16 28 28 H 0.96700 * 114.00204 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 3.0974 1.6964 -1.2124 5 1 1.2786 2.7465 -0.0006 6 1 3.0973 1.6964 1.2126 7 6 2.0085 -1.2105 0.0005 8 1 3.0494 -1.2330 0.2873 9 6 1.3548 -2.4016 -0.3732 10 6 1.8276 -3.6483 0.0940 11 6 1.2036 -4.7931 -0.2627 12 6 0.0637 -4.7679 -1.1109 13 6 -0.4083 -3.5312 -1.5813 14 6 0.2348 -2.3572 -1.2199 15 16 -1.8231 -3.7901 -2.5965 16 6 -1.7317 -5.5271 -2.3651 17 8 -2.5899 -6.4229 -2.9104 18 6 -0.7010 -5.8456 -1.5783 19 6 -0.3845 -7.2723 -1.2102 20 8 0.5109 -7.8260 -2.1765 21 1 -0.4850 0.8400 -0.0004 22 1 2.6923 -3.6869 0.7398 23 1 1.5761 -5.7391 0.1016 24 1 -0.1328 -1.4075 -1.5796 25 1 -3.3604 -6.6155 -2.3587 26 1 -1.3051 -7.8556 -1.1918 27 1 0.0821 -7.2986 -0.2255 28 1 0.7582 -8.7446 -2.0027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396354018.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = -59.999586 kcal Electronic energy + Delta-G solvation = -15457.772707 eV Core-core repulsion = 12757.828940 eV Total energy + Delta-G solvation = -2699.943767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.83785 -37.27648 -36.22637 -34.54526 -32.63901 -29.70369 -28.85473 -26.07453 -25.02735 -21.62605 -21.22598 -19.16725 -17.88962 -17.46025 -17.11576 -16.20017 -15.45822 -14.74977 -14.64225 -13.95722 -13.69670 -13.24108 -12.82301 -12.60718 -12.28517 -12.00192 -11.57114 -11.37606 -11.23174 -11.01368 -10.70553 -10.05011 -9.90714 -9.80814 -9.61230 -9.40252 -9.15231 -8.49867 -7.34701 -7.01763 -6.76339 -4.52276 1.64273 2.39772 2.71638 2.85690 2.95514 2.97660 2.98948 3.29579 3.74563 4.36008 4.83681 4.93338 5.41569 5.48008 5.52459 5.84328 5.99392 6.30763 6.64779 6.72556 6.80918 6.89991 7.10819 7.20065 7.57051 7.64567 7.75253 7.89126 7.93463 7.98153 8.30194 8.57342 8.65361 9.89416 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035782 B = 0.006561 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.318564 B = 4266.777245 C = 4913.125597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.087 0.913 9 C 0.126 3.874 10 C -0.194 4.194 11 C -0.049 4.049 12 C -0.195 4.195 13 C -0.063 4.063 14 C -0.160 4.160 15 S -0.005 6.005 16 C -0.038 4.038 17 O -0.453 6.453 18 C -0.066 4.066 19 C 0.143 3.857 20 O -0.560 6.560 21 H 0.288 0.712 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.369 0.631 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -6.290 0.593 6.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.119 3.881 10 C -0.213 4.213 11 C -0.069 4.069 12 C -0.199 4.199 13 C -0.178 4.178 14 C -0.186 4.186 15 S 0.256 5.744 16 C -0.196 4.196 17 O -0.260 6.260 18 C -0.080 4.080 19 C 0.063 3.937 20 O -0.365 6.365 21 H 0.099 0.901 22 H 0.121 0.879 23 H 0.114 0.886 24 H 0.142 0.858 25 H 0.222 0.778 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.506 -4.676 -0.960 5.392 hybrid contribution 0.742 -0.702 1.425 1.753 sum -1.764 -5.379 0.465 5.680 Atomic orbital electron populations 1.69866 1.07766 1.30192 1.31666 1.26048 0.94862 1.01900 0.92153 0.86237 0.80152 0.79465 0.80299 1.18458 1.20033 1.18676 1.19629 0.98349 0.91116 1.37214 0.89507 1.17490 0.90459 0.92123 0.88003 1.20703 1.02857 0.92813 1.04962 1.20188 0.93637 0.96954 0.96134 1.17174 1.02355 0.90462 1.09959 1.22062 0.97964 0.97521 1.00287 1.20542 1.00328 0.94624 1.03127 1.83832 1.32343 1.01971 1.56270 1.21541 0.99236 0.91213 1.07645 1.84823 1.35785 1.59159 1.46228 1.18772 0.96396 0.94344 0.98481 1.20513 0.91994 0.90403 0.90778 1.86662 1.66941 1.30948 1.51932 0.90126 0.87852 0.88617 0.85804 0.77797 0.93737 0.93092 0.78451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.88 10.98 55.54 0.61 -18.27 15 2 C 0.07 1.67 5.12 -17.35 -0.09 1.58 15 3 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 15 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 15 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 15 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 7 C -0.43 -10.70 9.02 -37.99 -0.34 -11.04 15 8 H 0.09 2.00 7.90 -52.49 -0.41 1.58 15 9 C 0.13 3.20 5.56 -106.88 -0.59 2.61 15 10 C -0.19 -4.50 9.68 -39.52 -0.38 -4.89 15 11 C -0.05 -1.09 9.58 -39.19 -0.38 -1.46 15 12 C -0.19 -4.58 5.86 -106.85 -0.63 -5.20 15 13 C -0.06 -1.57 6.45 -38.59 -0.25 -1.82 15 14 C -0.16 -4.15 8.72 -38.59 -0.34 -4.48 15 15 S 0.00 -0.10 23.29 -107.50 -2.50 -2.61 15 16 C -0.04 -0.78 7.46 29.08 0.22 -0.56 15 17 O -0.45 -7.98 13.10 -18.21 -0.24 -8.22 15 18 C -0.07 -1.39 5.47 -105.55 -0.58 -1.97 15 19 C 0.14 2.40 6.95 36.01 0.25 2.65 15 20 O -0.56 -9.45 13.64 -35.23 -0.48 -9.93 15 21 H 0.29 6.38 8.30 -40.82 -0.34 6.04 15 22 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 23 H 0.10 1.84 7.36 -52.49 -0.39 1.46 15 24 H 0.12 3.31 6.16 -52.48 -0.32 2.99 15 25 H 0.37 4.51 9.06 45.56 0.41 4.93 15 26 H 0.04 0.64 7.83 -51.93 -0.41 0.24 15 27 H 0.05 0.78 7.28 -51.93 -0.38 0.40 15 28 H 0.37 3.91 9.12 45.56 0.42 4.33 15 LS Contribution 262.87 15.07 3.96 3.96 Total: -1.00 -29.93 262.87 -7.43 -37.35 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.64 Total: 9.95 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.11 Total: -24.58 kcal Atomic # 7 Polarization: -18.88 SS G_CDS: 0.61 Total: -18.27 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.72 Total: -18.15 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.50 Total: -2.61 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.93 -7.43 -37.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354018.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.645 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds