Wall clock time and date at job start Mon Mar 30 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52997 * 109.46817 * 239.99873 * 2 1 3 5 5 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 6 6 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 7 7 C 4.11804 * 109.47090 * 120.00152 * 2 1 3 8 8 N 1.46894 * 109.47139 * 109.74312 * 7 6 5 9 9 C 1.46846 * 110.99686 * 294.20382 * 8 7 6 10 10 C 1.53038 * 109.52457 * 174.15958 * 9 8 7 11 11 C 1.53126 * 109.27529 * 59.18454 * 10 9 8 12 12 C 1.50700 * 109.57427 * 182.41211 * 11 10 9 13 13 H 1.07997 * 120.00299 * 119.71268 * 12 11 10 14 14 C 1.37875 * 119.99733 * 299.71353 * 12 11 10 15 15 N 1.31519 * 119.99880 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00218 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46949 * 90.00266 * 16 14 12 18 18 H 1.48496 * 109.47321 * 209.99976 * 16 14 12 19 19 H 1.48491 * 109.47297 * 330.00751 * 16 14 12 20 20 C 1.53119 * 109.15810 * 302.34432 * 11 10 9 21 21 C 1.46846 * 110.99957 * 170.00017 * 8 7 6 22 22 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 23 23 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00059 * 4 2 1 29 29 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 30 30 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47046 * 229.74167 * 7 6 5 32 32 H 1.08996 * 109.47170 * 349.73467 * 7 6 5 33 33 H 1.08996 * 109.46705 * 294.17863 * 9 8 7 34 34 H 1.09001 * 109.46446 * 54.14705 * 9 8 7 35 35 H 1.08998 * 109.50586 * 299.24457 * 10 9 8 36 36 H 1.09000 * 109.50567 * 179.11818 * 10 9 8 37 37 H 1.08996 * 109.52583 * 62.24993 * 11 10 9 38 38 H 0.96997 * 120.00088 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.50675 * 297.71686 * 20 11 10 40 40 H 1.08999 * 109.50439 * 177.59410 * 20 11 10 41 41 H 1.08997 * 109.46231 * 305.84877 * 21 8 7 42 42 H 1.09005 * 109.46400 * 65.83163 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0207 -0.6940 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.9027 -1.9414 3.3623 8 7 4.0623 -2.7711 3.0095 9 6 3.6740 -3.8606 2.1048 10 6 4.9244 -4.6133 1.6443 11 6 5.6547 -5.1759 2.8669 12 6 6.9187 -5.8679 2.4259 13 1 7.8768 -5.5232 2.7858 14 6 6.8520 -6.9410 1.5627 15 7 7.9550 -7.5452 1.1782 16 14 5.1947 -7.5376 0.9406 17 1 4.8514 -6.8239 -0.3156 18 1 5.2609 -8.9977 0.6781 19 1 4.1543 -7.2654 1.9646 20 6 6.0051 -4.0265 3.8160 21 6 4.7233 -3.2909 4.2134 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7217 -1.2491 31 1 3.1964 -1.2064 4.1118 32 1 2.1118 -2.5743 3.7647 33 1 3.0088 -4.5475 2.6279 34 1 3.1594 -3.4467 1.2376 35 1 5.5839 -3.9301 1.1090 36 1 4.6346 -5.4316 0.9852 37 1 5.0095 -5.8886 3.3806 38 1 7.9081 -8.3003 0.5713 39 1 6.6815 -3.3341 3.3148 40 1 6.4873 -4.4255 4.7084 41 1 4.9709 -2.4630 4.8779 42 1 4.0531 -3.9806 4.7266 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397190217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:16 Heat of formation + Delta-G solvation = 31.843432 kcal Electronic energy + Delta-G solvation = -18283.810923 eV Core-core repulsion = 15650.314843 eV Total energy + Delta-G solvation = -2633.496080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.60158 -37.45448 -34.49942 -32.30273 -30.99374 -30.16671 -27.46479 -27.40484 -27.26492 -24.47869 -22.56336 -21.57501 -20.85436 -18.82837 -16.71406 -16.51051 -15.75126 -14.97257 -14.73404 -14.42164 -14.32332 -14.23384 -13.40202 -13.23110 -12.82754 -12.67252 -12.56467 -12.39776 -12.16635 -11.85275 -11.76033 -11.65408 -11.51612 -11.27954 -11.25964 -10.85565 -10.54759 -10.08191 -9.91107 -9.83848 -9.70644 -9.51411 -9.04109 -8.90864 -8.48689 -7.98322 -6.03435 -4.01519 2.75303 2.85815 3.29165 3.38977 3.41193 4.09393 4.42510 4.44641 4.81185 4.84818 4.91448 5.27279 5.36679 5.40210 5.43635 5.46676 5.57317 5.57748 5.59087 5.69057 5.69768 5.72223 5.87427 5.88883 5.92681 6.09059 6.12941 6.14261 6.17181 6.20238 6.38728 6.46426 6.75927 6.84899 6.95629 7.24649 7.38308 7.51682 7.65686 7.79484 7.82574 8.57624 9.01365 9.59824 11.10167 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.005196 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.029900 B = 5387.969844 C = 5986.738308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.179 4.179 6 C -0.161 4.161 7 C 0.165 3.835 8 N -0.531 5.531 9 C 0.057 3.943 10 C -0.115 4.115 11 C 0.012 3.988 12 C -0.509 4.509 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.267 1.267 20 C -0.096 4.096 21 C 0.057 3.943 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.652 14.834 -0.103 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.180 4.180 6 C -0.162 4.162 7 C 0.038 3.962 8 N -0.256 5.256 9 C -0.071 4.071 10 C -0.153 4.153 11 C -0.007 4.007 12 C -0.547 4.547 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.134 4.134 21 C -0.071 4.071 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.225 14.966 -0.438 20.653 hybrid contribution -1.418 -0.982 -0.048 1.726 sum -15.643 13.984 -0.486 20.988 Atomic orbital electron populations 1.21875 0.93415 1.02311 1.02009 1.17608 0.95007 0.93911 0.88519 1.21868 1.01754 0.94039 1.01924 1.21877 1.01963 1.00437 0.95492 1.22018 1.00949 1.00081 0.94949 1.22137 0.99062 0.98641 0.96314 1.18961 0.91970 0.95116 0.90108 1.61925 1.24813 1.22485 1.16388 1.22203 0.98108 0.91286 0.95487 1.22015 0.95058 0.98068 1.00165 1.19197 0.96342 0.93167 0.91956 1.21065 0.92761 1.13404 1.27486 0.90825 1.25018 0.96063 0.96212 0.95941 1.69903 1.27080 1.22569 1.34636 0.86867 0.85269 0.76694 0.79522 1.20586 1.22562 1.19265 1.21498 0.94715 0.97565 0.99603 1.22216 0.96895 0.97667 0.90277 0.92428 0.91826 0.92328 0.92052 0.91882 0.92441 0.92251 0.91867 0.91885 0.88918 0.93104 0.95655 0.91932 0.91290 0.93411 0.96024 0.92759 0.91726 0.92174 0.91562 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.43 37.16 0.31 -0.95 16 2 C 0.05 0.54 0.95 -157.29 -0.15 0.39 16 3 C -0.14 -1.30 8.43 37.16 0.31 -0.99 16 4 C -0.14 -1.50 8.43 37.16 0.31 -1.18 16 5 C -0.18 -2.53 11.77 -37.12 -0.44 -2.96 16 6 C -0.16 -2.44 12.34 -37.12 -0.46 -2.90 16 7 C 0.17 2.36 5.46 -6.61 -0.04 2.33 16 8 N -0.53 -9.20 4.63 -238.18 -1.10 -10.31 16 9 C 0.06 1.08 5.30 -3.83 -0.02 1.06 16 10 C -0.12 -2.59 4.84 -26.65 -0.13 -2.72 16 11 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 12 C -0.51 -14.48 9.15 -34.44 -0.31 -14.79 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 15 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 16 Si 0.89 22.40 24.37 -169.99 -4.14 18.25 16 17 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 18 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 20 C -0.10 -1.93 5.32 -26.65 -0.14 -2.07 16 21 C 0.06 0.95 5.46 -3.83 -0.02 0.93 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.14 7.99 -51.93 -0.41 0.72 16 32 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.16 7.11 -51.93 -0.37 0.79 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.05 1.13 3.39 -51.93 -0.18 0.95 16 37 H 0.02 0.53 7.19 -51.93 -0.37 0.16 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -30.95 328.65 -8.23 -39.18 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.69 Total: -3.00 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.02 Total: -21.82 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.33 Total: -37.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.95 -8.23 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.026 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds