Wall clock time and date at job start Mon Mar 30 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52997 * 109.46817 * 239.99873 * 2 1 3 5 5 C 1.47206 * 109.47021 * 120.00065 * 2 1 3 6 6 C 2.64598 * 109.47129 * 120.00201 * 2 1 3 7 7 C 4.11804 * 109.47090 * 120.00152 * 2 1 3 8 8 N 1.46894 * 109.47139 * 109.74312 * 7 6 5 9 9 C 1.46846 * 110.99686 * 294.20382 * 8 7 6 10 10 C 1.53038 * 109.52457 * 174.15958 * 9 8 7 11 11 C 1.53126 * 109.27529 * 59.18454 * 10 9 8 12 12 C 1.50700 * 109.57427 * 182.41211 * 11 10 9 13 13 H 1.07997 * 120.00299 * 119.71268 * 12 11 10 14 14 C 1.37875 * 119.99733 * 299.71353 * 12 11 10 15 15 N 1.31519 * 119.99880 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00218 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46949 * 90.00266 * 16 14 12 18 18 H 1.48496 * 109.47321 * 209.99976 * 16 14 12 19 19 H 1.48491 * 109.47297 * 330.00751 * 16 14 12 20 20 C 1.53119 * 109.15810 * 302.34432 * 11 10 9 21 21 C 1.46846 * 110.99957 * 170.00017 * 8 7 6 22 22 H 1.09004 * 109.46733 * 299.99664 * 1 2 3 23 23 H 1.08992 * 109.47068 * 59.99393 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47045 * 300.00068 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99976 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00059 * 4 2 1 29 29 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 30 30 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47046 * 229.74167 * 7 6 5 32 32 H 1.08996 * 109.47170 * 349.73467 * 7 6 5 33 33 H 1.08996 * 109.46705 * 294.17863 * 9 8 7 34 34 H 1.09001 * 109.46446 * 54.14705 * 9 8 7 35 35 H 1.08998 * 109.50586 * 299.24457 * 10 9 8 36 36 H 1.09000 * 109.50567 * 179.11818 * 10 9 8 37 37 H 1.08996 * 109.52583 * 62.24993 * 11 10 9 38 38 H 0.96997 * 120.00088 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.50675 * 297.71686 * 20 11 10 40 40 H 1.08999 * 109.50439 * 177.59410 * 20 11 10 41 41 H 1.08997 * 109.46231 * 305.84877 * 21 8 7 42 42 H 1.09005 * 109.46400 * 65.83163 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0207 -0.6940 1.2019 6 6 2.4120 -1.2474 2.1604 7 6 2.9027 -1.9414 3.3623 8 7 4.0623 -2.7711 3.0095 9 6 3.6740 -3.8606 2.1048 10 6 4.9244 -4.6133 1.6443 11 6 5.6547 -5.1759 2.8669 12 6 6.9187 -5.8679 2.4259 13 1 7.8768 -5.5232 2.7858 14 6 6.8520 -6.9410 1.5627 15 7 7.9550 -7.5452 1.1782 16 14 5.1947 -7.5376 0.9406 17 1 4.8514 -6.8239 -0.3156 18 1 5.2609 -8.9977 0.6781 19 1 4.1543 -7.2654 1.9646 20 6 6.0051 -4.0265 3.8160 21 6 4.7233 -3.2909 4.2134 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6766 -1.7490 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7217 -1.2491 31 1 3.1964 -1.2064 4.1118 32 1 2.1118 -2.5743 3.7647 33 1 3.0088 -4.5475 2.6279 34 1 3.1594 -3.4467 1.2376 35 1 5.5839 -3.9301 1.1090 36 1 4.6346 -5.4316 0.9852 37 1 5.0095 -5.8886 3.3806 38 1 7.9081 -8.3003 0.5713 39 1 6.6815 -3.3341 3.3148 40 1 6.4873 -4.4255 4.7084 41 1 4.9709 -2.4630 4.8779 42 1 4.0531 -3.9806 4.7266 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397190217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:15 Heat of formation + Delta-G solvation = 13.271568 kcal Electronic energy + Delta-G solvation = -18284.616259 eV Core-core repulsion = 15650.314843 eV Total energy + Delta-G solvation = -2634.301416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07206 -38.30647 -36.13790 -34.12075 -32.49102 -31.70513 -28.81303 -28.18428 -28.15720 -26.14619 -24.13107 -23.13979 -21.89105 -20.51456 -18.85021 -17.60308 -17.22031 -16.20002 -16.14132 -15.88432 -15.19274 -15.14843 -15.09731 -14.89335 -14.57545 -14.00674 -13.74253 -13.44877 -13.34896 -13.22033 -13.15229 -12.73778 -12.61642 -12.41753 -12.19830 -12.13120 -12.08501 -12.04229 -11.70998 -11.45881 -11.00784 -10.97592 -10.73547 -10.68846 -10.58224 -9.28812 -8.31056 -6.33784 1.27318 1.31417 1.42212 1.65683 1.80631 2.30272 3.04189 3.05885 3.24862 4.01121 4.02877 4.04305 4.08463 4.14353 4.19957 4.32229 4.49937 4.54229 4.62865 4.67263 4.68941 4.73980 4.75940 4.76177 4.83979 4.91231 4.93790 4.97207 4.97645 5.13333 5.15274 5.22858 5.27045 5.37849 5.40100 5.51534 5.65716 5.75306 6.08407 6.17627 6.32111 6.73156 6.73407 7.31385 8.86219 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.005196 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.029900 B = 5387.969844 C = 5986.738308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.041 3.959 3 C -0.136 4.136 4 C -0.140 4.140 5 C -0.179 4.179 6 C -0.196 4.196 7 C 0.168 3.832 8 N -0.546 5.546 9 C 0.068 3.932 10 C -0.112 4.112 11 C 0.011 3.989 12 C -0.517 4.517 13 H 0.033 0.967 14 C 0.011 3.989 15 N -0.951 5.951 16 Si 0.948 3.052 17 H -0.270 1.270 18 H -0.296 1.296 19 H -0.248 1.248 20 C -0.094 4.094 21 C 0.065 3.935 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 16.385 0.071 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.180 4.180 6 C -0.197 4.197 7 C 0.043 3.957 8 N -0.271 5.271 9 C -0.060 4.060 10 C -0.150 4.150 11 C -0.008 4.008 12 C -0.555 4.555 13 H 0.052 0.948 14 C -0.185 4.185 15 N -0.592 5.592 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.224 1.224 19 H -0.172 1.172 20 C -0.131 4.131 21 C -0.062 4.062 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.247 16.542 -0.245 23.899 hybrid contribution -0.375 -1.403 -0.099 1.456 sum -17.621 15.139 -0.344 23.234 Atomic orbital electron populations 1.21854 0.91769 1.02272 1.03295 1.17889 0.96349 0.94440 0.87249 1.21858 1.00951 0.93207 1.03260 1.21884 1.00891 1.00293 0.96626 1.22899 1.00195 0.99684 0.95267 1.22541 1.00199 0.99654 0.97295 1.19046 0.91141 0.95152 0.90403 1.61835 1.26668 1.21983 1.16647 1.21985 0.95983 0.91715 0.96321 1.21863 0.96380 0.97743 0.99018 1.19170 0.94088 0.94158 0.93360 1.21419 0.93347 1.13673 1.27021 0.94843 1.25874 0.99897 0.96480 0.96282 1.70052 1.29664 1.23546 1.35942 0.85849 0.80939 0.76034 0.79672 1.19580 1.22410 1.17190 1.21411 0.96723 0.96344 0.98664 1.22137 0.94933 0.98702 0.90437 0.92188 0.89536 0.93032 0.93314 0.89516 0.92181 0.93243 0.89273 0.93547 0.86634 0.91660 0.94864 0.91524 0.93107 0.94488 0.96086 0.92607 0.93312 0.91890 0.88336 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.43 71.98 0.61 -1.47 16 2 C 0.04 0.80 0.95 -53.99 -0.05 0.75 16 3 C -0.14 -2.23 8.43 71.98 0.61 -1.62 16 4 C -0.14 -2.74 8.43 71.98 0.61 -2.13 16 5 C -0.18 -4.76 11.77 31.13 0.37 -4.40 16 6 C -0.20 -5.55 12.34 31.13 0.38 -5.16 16 7 C 0.17 4.30 5.46 84.50 0.46 4.76 16 8 N -0.55 -17.58 4.63 -907.47 -4.21 -21.78 16 9 C 0.07 2.44 5.30 86.33 0.46 2.90 16 10 C -0.11 -4.97 4.84 30.65 0.15 -4.82 16 11 C 0.01 0.53 1.75 -11.46 -0.02 0.51 16 12 C -0.52 -30.29 9.15 25.60 0.23 -30.06 16 13 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 14 C 0.01 0.67 5.45 84.65 0.46 1.13 16 15 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 16 Si 0.95 46.36 24.37 68.60 1.67 48.03 16 17 H -0.27 -12.69 6.89 99.48 0.69 -12.00 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 20 C -0.09 -3.70 5.32 30.65 0.16 -3.54 16 21 C 0.06 1.98 5.46 86.33 0.47 2.45 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 23 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 2.40 7.99 -2.39 -0.02 2.38 16 32 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 2.34 7.11 -2.39 -0.02 2.33 16 35 H 0.05 2.38 8.14 -2.39 -0.02 2.37 16 36 H 0.04 1.70 3.39 -2.39 -0.01 1.69 16 37 H 0.02 1.00 7.19 -2.39 -0.02 0.99 16 38 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 39 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.10 2.41 8.02 -2.39 -0.02 2.39 16 42 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -68.55 328.65 3.54 -65.02 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.88 Total: 10.09 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 4.90 Total: -40.69 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.91 Total: -82.44 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -68.55 3.54 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397190217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.287 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds