Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47299 * 2 1 4 4 C 1.53003 * 109.47003 * 239.99649 * 2 1 3 5 5 C 1.47207 * 109.46843 * 120.00062 * 2 1 3 6 6 C 2.64605 * 109.46909 * 119.99964 * 2 1 3 7 7 C 4.11803 * 109.46929 * 119.99988 * 2 1 3 8 8 N 1.46904 * 109.47143 * 98.62419 * 7 6 5 9 9 C 1.46852 * 110.99778 * 66.04345 * 8 7 6 10 10 C 1.53041 * 109.51082 * 174.16790 * 9 8 7 11 11 C 1.53094 * 109.29269 * 59.18634 * 10 9 8 12 12 C 1.53125 * 109.15362 * 302.33837 * 11 10 9 13 13 H 1.09002 * 109.49922 * 297.71246 * 12 11 10 14 14 C 1.50697 * 109.50502 * 177.59494 * 12 11 10 15 15 H 1.07998 * 119.99994 * 275.36838 * 14 12 11 16 16 C 1.37882 * 119.99721 * 95.36735 * 14 12 11 17 17 N 1.31513 * 119.99693 * 185.77653 * 16 14 12 18 18 Si 1.86794 * 120.00348 * 5.77197 * 16 14 12 19 19 H 1.48503 * 109.46846 * 84.78055 * 18 16 14 20 20 H 1.48494 * 109.47520 * 204.78068 * 18 16 14 21 21 H 1.48503 * 109.47204 * 324.78527 * 18 16 14 22 22 C 1.46844 * 110.99910 * 301.83415 * 8 7 6 23 23 H 1.09000 * 109.47013 * 300.00157 * 1 2 3 24 24 H 1.08997 * 109.46761 * 60.00389 * 1 2 3 25 25 H 1.09003 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46806 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46896 * 299.99528 * 3 2 1 28 28 H 1.09000 * 109.47216 * 59.99967 * 3 2 1 29 29 H 1.08997 * 109.47073 * 300.00299 * 4 2 1 30 30 H 1.08997 * 109.46878 * 60.00459 * 4 2 1 31 31 H 1.08995 * 109.46855 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47291 * 338.62117 * 7 6 5 33 33 H 1.09000 * 109.47103 * 218.62285 * 7 6 5 34 34 H 1.08995 * 109.46500 * 294.17480 * 9 8 7 35 35 H 1.08998 * 109.46508 * 54.15899 * 9 8 7 36 36 H 1.09003 * 109.50268 * 179.11590 * 10 9 8 37 37 H 1.09000 * 109.50459 * 299.23304 * 10 9 8 38 38 H 1.08997 * 109.52487 * 182.43782 * 11 10 9 39 39 H 1.08998 * 109.58048 * 62.26818 * 11 10 9 40 40 H 0.96998 * 120.00394 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46439 * 305.85454 * 22 8 7 42 42 H 1.09009 * 109.45978 * 65.83324 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4120 -1.2474 2.1605 7 6 2.9026 -1.9413 3.3624 8 7 3.8809 -2.9652 2.9716 9 6 5.0884 -2.3504 2.4057 10 6 6.1391 -3.4324 2.1458 11 6 5.5684 -4.4687 1.1742 12 6 4.2851 -5.0587 1.7657 13 1 4.5169 -5.5712 2.6994 14 6 3.6845 -6.0370 0.7894 15 1 3.0404 -5.6835 -0.0021 16 6 3.9573 -7.3834 0.9068 17 7 3.5275 -8.2237 -0.0091 18 14 4.9374 -8.0142 2.3665 19 1 4.0242 -8.2396 3.5156 20 1 5.6001 -9.2923 2.0028 21 1 5.9670 -7.0119 2.7417 22 6 3.2880 -3.9298 2.0366 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4423 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 2.0658 -2.4153 3.8753 33 1 3.3769 -1.2214 4.0294 34 1 4.8382 -1.8546 1.4678 35 1 5.4869 -1.6185 3.1083 36 1 7.0295 -2.9781 1.7112 37 1 6.4001 -3.9193 3.0854 38 1 6.2976 -5.2640 1.0202 39 1 5.3437 -3.9907 0.2208 40 1 3.7197 -9.1708 0.0731 41 1 2.3786 -4.3449 2.4711 42 1 3.0463 -3.4265 1.1003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397570406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = 22.792449 kcal Electronic energy + Delta-G solvation = -18605.579360 eV Core-core repulsion = 15971.690800 eV Total energy + Delta-G solvation = -2633.888560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.59546 -37.31871 -34.25052 -32.41740 -30.81297 -30.23227 -27.38083 -27.29483 -26.51618 -24.98184 -22.45967 -21.36567 -20.79539 -18.73148 -16.94333 -16.40984 -15.37012 -14.82025 -14.61535 -14.29112 -14.26353 -13.90272 -13.59721 -13.08067 -12.71664 -12.52284 -12.47252 -12.41140 -12.06565 -11.82252 -11.75569 -11.53291 -11.21564 -11.15425 -11.09919 -10.95892 -10.63752 -10.18581 -9.86660 -9.77461 -9.47961 -9.40948 -9.26687 -8.90623 -8.46058 -7.95572 -6.04352 -4.03280 2.90842 2.95131 3.34450 3.41851 3.46396 4.22966 4.47154 4.53285 4.91515 4.92315 5.02047 5.25859 5.44584 5.49873 5.54914 5.57518 5.64297 5.66902 5.67961 5.78530 5.82455 5.88496 5.92254 5.97489 6.09129 6.20704 6.22031 6.22908 6.30355 6.36766 6.44846 6.56344 6.73929 6.86181 6.94126 7.32846 7.49243 7.59411 7.61107 7.88018 7.89395 8.57092 9.00667 9.59636 11.08971 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.005839 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.396916 B = 4794.048557 C = 5295.056783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.178 4.178 6 C -0.202 4.202 7 C 0.162 3.838 8 N -0.531 5.531 9 C 0.061 3.939 10 C -0.120 4.120 11 C -0.112 4.112 12 C 0.020 3.980 13 H 0.039 0.961 14 C -0.511 4.511 15 H 0.070 0.930 16 C 0.072 3.928 17 N -0.902 5.902 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.263 1.263 22 C 0.072 3.928 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 16.907 2.787 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.180 4.180 6 C -0.204 4.204 7 C 0.035 3.965 8 N -0.253 5.253 9 C -0.067 4.067 10 C -0.158 4.158 11 C -0.150 4.150 12 C 0.001 3.999 13 H 0.057 0.943 14 C -0.549 4.549 15 H 0.088 0.912 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.188 1.188 22 C -0.055 4.055 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.325 16.423 3.165 16.778 hybrid contribution 0.237 -0.050 -0.065 0.250 sum -1.088 16.374 3.100 16.700 Atomic orbital electron populations 1.21864 0.93264 1.02580 1.01856 1.17625 0.95204 0.93692 0.88697 1.21857 1.01399 0.94280 1.01908 1.21875 1.01567 1.00899 0.95432 1.22185 1.00513 0.99908 0.95401 1.23785 1.00011 0.98826 0.97759 1.19460 0.95368 0.92025 0.89682 1.62513 1.05096 1.13892 1.43754 1.22011 0.91179 0.96137 0.97346 1.21686 0.96519 0.97058 1.00569 1.21856 0.99179 0.96646 0.97344 1.19170 0.91263 0.93022 0.96483 0.94278 1.20949 1.29961 0.90644 1.13346 0.91213 1.25048 0.95179 0.96835 0.95906 1.69916 1.46811 1.03277 1.34001 0.86827 0.81097 0.77980 0.83461 1.20163 1.21836 1.18765 1.22281 0.98273 0.92507 0.92458 0.92489 0.91886 0.92051 0.92396 0.91882 0.92489 0.91799 0.91911 0.92307 0.88790 0.89354 0.95201 0.92060 0.92924 0.91946 0.92955 0.93322 0.92724 0.91561 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.43 37.16 0.31 -1.18 16 2 C 0.05 0.59 0.95 -157.29 -0.15 0.44 16 3 C -0.14 -1.40 8.43 37.15 0.31 -1.09 16 4 C -0.14 -1.76 8.43 37.16 0.31 -1.45 16 5 C -0.18 -2.76 11.77 -37.12 -0.44 -3.20 16 6 C -0.20 -3.26 11.00 -37.12 -0.41 -3.67 16 7 C 0.16 2.44 5.88 -6.61 -0.04 2.40 16 8 N -0.53 -9.57 4.86 -238.18 -1.16 -10.72 16 9 C 0.06 1.04 5.13 -3.83 -0.02 1.02 16 10 C -0.12 -2.15 6.09 -26.66 -0.16 -2.32 16 11 C -0.11 -2.43 5.27 -26.62 -0.14 -2.57 16 12 C 0.02 0.48 1.95 -91.69 -0.18 0.30 16 13 H 0.04 0.97 5.25 -51.93 -0.27 0.69 16 14 C -0.51 -14.44 8.86 -34.44 -0.31 -14.74 16 15 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 18 Si 0.88 21.92 27.02 -169.99 -4.59 17.32 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.31 6.78 56.52 0.38 -5.93 16 22 C 0.07 1.53 4.27 -3.84 -0.02 1.51 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.03 0.53 7.48 -51.93 -0.39 0.14 16 35 H 0.06 0.89 8.06 -51.93 -0.42 0.48 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 1.44 8.12 -51.93 -0.42 1.01 16 42 H 0.03 0.65 7.27 -51.92 -0.38 0.27 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.55 333.35 -8.76 -39.31 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.79 Total: -1.41 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.01 Total: -22.56 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.38 Total: -37.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.55 -8.76 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.100 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds