Wall clock time and date at job start Mon Mar 30 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47299 * 2 1 4 4 C 1.53003 * 109.47003 * 239.99649 * 2 1 3 5 5 C 1.47207 * 109.46843 * 120.00062 * 2 1 3 6 6 C 2.64605 * 109.46909 * 119.99964 * 2 1 3 7 7 C 4.11803 * 109.46929 * 119.99988 * 2 1 3 8 8 N 1.46904 * 109.47143 * 98.62419 * 7 6 5 9 9 C 1.46852 * 110.99778 * 66.04345 * 8 7 6 10 10 C 1.53041 * 109.51082 * 174.16790 * 9 8 7 11 11 C 1.53094 * 109.29269 * 59.18634 * 10 9 8 12 12 C 1.53125 * 109.15362 * 302.33837 * 11 10 9 13 13 H 1.09002 * 109.49922 * 297.71246 * 12 11 10 14 14 C 1.50697 * 109.50502 * 177.59494 * 12 11 10 15 15 H 1.07998 * 119.99994 * 275.36838 * 14 12 11 16 16 C 1.37882 * 119.99721 * 95.36735 * 14 12 11 17 17 N 1.31513 * 119.99693 * 185.77653 * 16 14 12 18 18 Si 1.86794 * 120.00348 * 5.77197 * 16 14 12 19 19 H 1.48503 * 109.46846 * 84.78055 * 18 16 14 20 20 H 1.48494 * 109.47520 * 204.78068 * 18 16 14 21 21 H 1.48503 * 109.47204 * 324.78527 * 18 16 14 22 22 C 1.46844 * 110.99910 * 301.83415 * 8 7 6 23 23 H 1.09000 * 109.47013 * 300.00157 * 1 2 3 24 24 H 1.08997 * 109.46761 * 60.00389 * 1 2 3 25 25 H 1.09003 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46806 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.46896 * 299.99528 * 3 2 1 28 28 H 1.09000 * 109.47216 * 59.99967 * 3 2 1 29 29 H 1.08997 * 109.47073 * 300.00299 * 4 2 1 30 30 H 1.08997 * 109.46878 * 60.00459 * 4 2 1 31 31 H 1.08995 * 109.46855 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.47291 * 338.62117 * 7 6 5 33 33 H 1.09000 * 109.47103 * 218.62285 * 7 6 5 34 34 H 1.08995 * 109.46500 * 294.17480 * 9 8 7 35 35 H 1.08998 * 109.46508 * 54.15899 * 9 8 7 36 36 H 1.09003 * 109.50268 * 179.11590 * 10 9 8 37 37 H 1.09000 * 109.50459 * 299.23304 * 10 9 8 38 38 H 1.08997 * 109.52487 * 182.43782 * 11 10 9 39 39 H 1.08998 * 109.58048 * 62.26818 * 11 10 9 40 40 H 0.96998 * 120.00394 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.46439 * 305.85454 * 22 8 7 42 42 H 1.09009 * 109.45978 * 65.83324 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0206 -0.6940 1.2019 6 6 2.4120 -1.2474 2.1605 7 6 2.9026 -1.9413 3.3624 8 7 3.8809 -2.9652 2.9716 9 6 5.0884 -2.3504 2.4057 10 6 6.1391 -3.4324 2.1458 11 6 5.5684 -4.4687 1.1742 12 6 4.2851 -5.0587 1.7657 13 1 4.5169 -5.5712 2.6994 14 6 3.6845 -6.0370 0.7894 15 1 3.0404 -5.6835 -0.0021 16 6 3.9573 -7.3834 0.9068 17 7 3.5275 -8.2237 -0.0091 18 14 4.9374 -8.0142 2.3665 19 1 4.0242 -8.2396 3.5156 20 1 5.6001 -9.2923 2.0028 21 1 5.9670 -7.0119 2.7417 22 6 3.2880 -3.9298 2.0366 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4423 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 2.0658 -2.4153 3.8753 33 1 3.3769 -1.2214 4.0294 34 1 4.8382 -1.8546 1.4678 35 1 5.4869 -1.6185 3.1083 36 1 7.0295 -2.9781 1.7112 37 1 6.4001 -3.9193 3.0854 38 1 6.2976 -5.2640 1.0202 39 1 5.3437 -3.9907 0.2208 40 1 3.7197 -9.1708 0.0731 41 1 2.3786 -4.3449 2.4711 42 1 3.0463 -3.4265 1.1003 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397570406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:20 Heat of formation + Delta-G solvation = 4.875630 kcal Electronic energy + Delta-G solvation = -18606.356292 eV Core-core repulsion = 15971.690800 eV Total energy + Delta-G solvation = -2634.665491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.10842 -38.32406 -35.91099 -34.32297 -32.22820 -31.94628 -28.25933 -28.20275 -27.89722 -26.95494 -23.94322 -22.97634 -22.00639 -20.43297 -19.03374 -17.63537 -16.92449 -16.17803 -16.02510 -15.73894 -15.29812 -15.26938 -15.05802 -14.66848 -14.54242 -14.23036 -13.63941 -13.44147 -13.32219 -13.12485 -12.96816 -12.83089 -12.68218 -12.50246 -12.39990 -12.18348 -12.09297 -11.82893 -11.79735 -11.39954 -11.13375 -10.95572 -10.79959 -10.62184 -10.58009 -9.44400 -8.29926 -6.33949 1.37012 1.37254 1.49889 1.68713 1.76615 2.36125 3.00622 3.09642 3.25823 3.96828 3.98778 4.04687 4.10185 4.14036 4.22380 4.37104 4.54256 4.59435 4.66274 4.67759 4.70887 4.76119 4.78152 4.80405 4.85918 4.91487 4.92037 4.95607 5.03941 5.08351 5.18946 5.21853 5.22849 5.30990 5.35540 5.53163 5.62542 5.71878 6.07156 6.17054 6.34797 6.68858 6.73256 7.32249 8.87305 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.005839 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.396916 B = 4794.048557 C = 5295.056783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.039 3.961 3 C -0.131 4.131 4 C -0.139 4.139 5 C -0.185 4.185 6 C -0.232 4.232 7 C 0.162 3.838 8 N -0.531 5.531 9 C 0.062 3.938 10 C -0.113 4.113 11 C -0.111 4.111 12 C 0.019 3.981 13 H 0.039 0.961 14 C -0.517 4.517 15 H 0.022 0.978 16 C 0.014 3.986 17 N -0.951 5.951 18 Si 0.946 3.054 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.244 1.244 22 C 0.088 3.912 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.017 0.983 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.033 0.967 40 H 0.266 0.734 41 H 0.055 0.945 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 19.064 4.619 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 C -0.188 4.188 4 C -0.196 4.196 5 C -0.187 4.187 6 C -0.234 4.234 7 C 0.035 3.965 8 N -0.253 5.253 9 C -0.065 4.065 10 C -0.151 4.151 11 C -0.149 4.149 12 C -0.001 4.001 13 H 0.057 0.943 14 C -0.556 4.556 15 H 0.041 0.959 16 C -0.183 4.183 17 N -0.591 5.591 18 Si 0.770 3.230 19 H -0.191 1.191 20 H -0.214 1.214 21 H -0.167 1.167 22 C -0.040 4.040 23 H 0.081 0.919 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -0.192 18.613 5.007 19.275 hybrid contribution -0.199 -0.666 -0.745 1.019 sum -0.390 17.946 4.262 18.450 Atomic orbital electron populations 1.21853 0.92037 1.01892 1.03456 1.17901 0.96244 0.94818 0.87131 1.21821 1.01003 0.92591 1.03395 1.21870 1.00823 0.99785 0.97103 1.23080 0.99980 0.99803 0.95825 1.24154 1.00978 0.99600 0.98672 1.19617 0.95290 0.91850 0.89698 1.62453 1.06049 1.14705 1.42052 1.22085 0.90372 0.96273 0.97803 1.21642 0.97634 0.96173 0.99632 1.21731 0.97822 0.97542 0.97813 1.19127 0.92735 0.93054 0.95137 0.94258 1.21201 1.29236 0.92037 1.13077 0.95918 1.25944 0.96536 0.96938 0.98910 1.70067 1.48885 1.03762 1.36369 0.85749 0.80003 0.77698 0.79575 1.19127 1.21414 1.16714 1.21876 0.97243 0.92610 0.92286 0.91851 0.89336 0.93882 0.92996 0.89471 0.91941 0.94561 0.89025 0.93428 0.88107 0.86105 0.96458 0.88425 0.90038 0.91276 0.93969 0.94799 0.92524 0.92687 0.97584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.43 71.98 0.61 -2.15 16 2 C 0.04 0.93 0.95 -53.99 -0.05 0.88 16 3 C -0.13 -2.37 8.43 71.98 0.61 -1.77 16 4 C -0.14 -3.47 8.43 71.98 0.61 -2.87 16 5 C -0.19 -5.67 11.77 31.13 0.37 -5.31 16 6 C -0.23 -7.35 11.00 31.12 0.34 -7.00 16 7 C 0.16 4.57 5.88 84.50 0.50 5.07 16 8 N -0.53 -18.21 4.86 -907.45 -4.41 -22.61 16 9 C 0.06 1.94 5.13 86.33 0.44 2.38 16 10 C -0.11 -3.72 6.09 30.64 0.19 -3.54 16 11 C -0.11 -4.77 5.27 30.67 0.16 -4.60 16 12 C 0.02 0.90 1.95 -11.49 -0.02 0.88 16 13 H 0.04 1.90 5.25 -2.39 -0.01 1.88 16 14 C -0.52 -30.50 8.86 25.60 0.23 -30.28 16 15 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 16 C 0.01 0.81 5.47 84.66 0.46 1.27 16 17 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 18 Si 0.95 45.27 27.02 68.60 1.85 47.12 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.24 -10.82 6.78 99.48 0.67 -10.14 16 22 C 0.09 3.79 4.27 86.33 0.37 4.16 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.12 2.63 8.06 -2.39 -0.02 2.61 16 34 H 0.02 0.59 7.48 -2.39 -0.02 0.57 16 35 H 0.10 2.40 8.06 -2.39 -0.02 2.38 16 36 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.05 2.45 8.12 -2.39 -0.02 2.43 16 42 H 0.01 0.28 7.27 -2.38 -0.02 0.26 16 Total: -1.00 -68.91 333.35 3.46 -65.45 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.92 Total: 13.21 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 4.80 Total: -42.87 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -4.11 Total: -82.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.85 Total: 47.12 kcal Total: -68.91 3.46 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.325 kcal (2) G-P(sol) polarization free energy of solvation -68.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds