Wall clock time and date at job start Mon Mar 30 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47280 * 2 1 4 4 C 1.53005 * 109.47210 * 240.00150 * 2 1 3 5 5 C 1.47195 * 109.47661 * 120.00299 * 2 1 3 6 6 C 2.64601 * 109.47390 * 120.00271 * 2 1 3 7 7 C 4.11798 * 109.47494 * 120.00135 * 2 1 3 8 8 N 1.46895 * 109.47684 * 332.81989 * 7 6 5 9 9 C 1.46853 * 110.99660 * 66.04894 * 8 7 6 10 10 C 1.53036 * 109.52427 * 185.83753 * 9 8 7 11 11 C 1.53117 * 109.27818 * 300.82356 * 10 9 8 12 12 C 1.53124 * 109.16094 * 57.65433 * 11 10 9 13 13 H 1.09001 * 109.50366 * 62.32552 * 12 11 10 14 14 C 1.50700 * 109.50099 * 182.40293 * 12 11 10 15 15 H 1.07999 * 119.99988 * 119.99737 * 14 12 11 16 16 C 1.37885 * 120.00047 * 299.99917 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 359.72512 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.46844 * 111.00225 * 190.25666 * 8 7 6 23 23 H 1.09002 * 109.47065 * 299.99821 * 1 2 3 24 24 H 1.08995 * 109.47573 * 59.99579 * 1 2 3 25 25 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47687 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47334 * 300.00468 * 3 2 1 28 28 H 1.09002 * 109.46925 * 60.00093 * 3 2 1 29 29 H 1.09000 * 109.46949 * 300.00114 * 4 2 1 30 30 H 1.09005 * 109.47148 * 59.99655 * 4 2 1 31 31 H 1.09000 * 109.47348 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.46625 * 212.82253 * 7 6 5 33 33 H 1.08994 * 109.47179 * 92.83022 * 7 6 5 34 34 H 1.09005 * 109.45879 * 65.82159 * 9 8 7 35 35 H 1.08999 * 109.45163 * 305.85348 * 9 8 7 36 36 H 1.08993 * 109.50219 * 180.87630 * 10 9 8 37 37 H 1.09003 * 109.49810 * 60.76807 * 10 9 8 38 38 H 1.08999 * 109.52365 * 297.74604 * 11 10 9 39 39 H 1.09005 * 109.56853 * 177.58685 * 11 10 9 40 40 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.46093 * 54.15330 * 22 8 7 42 42 H 1.08996 * 109.46666 * 294.18230 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0207 -0.6939 1.2018 6 6 2.4120 -1.2474 2.1604 7 6 2.9028 -1.9413 3.3622 8 7 1.7621 -2.4619 4.1273 9 6 1.0620 -3.5134 3.3784 10 6 -0.1998 -3.9287 4.1381 11 6 0.1918 -4.4401 5.5273 12 6 0.9614 -3.3430 6.2681 13 1 0.3166 -2.4747 6.4043 14 6 1.4018 -3.8586 7.6139 15 1 2.4526 -3.8954 7.8606 16 6 0.4632 -4.2833 8.5304 17 7 0.8476 -4.7328 9.7051 18 14 -1.3547 -4.2124 8.1066 19 1 -1.7642 -5.4890 7.4679 20 1 -2.1442 -4.0038 9.3469 21 1 -1.6007 -3.0881 7.1681 22 6 2.1896 -2.9447 5.4466 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7208 -1.2495 32 1 3.4663 -1.2424 3.9804 33 1 3.5493 -2.7674 3.0662 34 1 1.7181 -4.3764 3.2647 35 1 0.7855 -3.1352 2.3942 36 1 -0.7108 -4.7200 3.5898 37 1 -0.8626 -3.0694 4.2401 38 1 0.8230 -5.3229 5.4259 39 1 -0.7067 -4.6971 6.0884 40 1 0.1873 -5.0319 10.3496 41 1 2.7319 -2.1536 5.9646 42 1 2.8403 -3.8103 5.3233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397570408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:23 Heat of formation + Delta-G solvation = 31.269374 kcal Electronic energy + Delta-G solvation = -18214.723510 eV Core-core repulsion = 15581.202538 eV Total energy + Delta-G solvation = -2633.520973 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.55652 -37.46482 -34.39209 -32.39716 -31.15589 -30.24962 -27.47650 -27.43617 -26.61881 -24.91785 -22.60070 -21.50269 -20.78299 -18.87392 -16.76763 -16.47583 -15.62229 -14.91105 -14.69637 -14.42756 -14.32839 -14.04124 -13.63931 -13.29580 -12.77421 -12.68555 -12.58856 -12.43853 -12.17914 -11.94340 -11.87913 -11.59357 -11.33677 -11.26490 -11.08202 -11.04360 -10.52817 -10.09241 -10.02354 -9.81574 -9.64061 -9.58572 -9.10125 -8.91631 -8.49916 -7.86236 -6.05597 -4.04700 2.78998 2.88381 3.30111 3.41500 3.45342 4.11976 4.44282 4.51797 4.80460 4.83558 4.90720 5.26157 5.38514 5.41095 5.43553 5.46504 5.53009 5.56558 5.66112 5.67107 5.70086 5.72705 5.85095 5.85592 6.00739 6.10969 6.11713 6.14033 6.16004 6.28529 6.33990 6.48790 6.61639 6.80808 6.85448 7.20434 7.39854 7.54422 7.65881 7.80961 7.87903 8.53214 8.97381 9.57337 11.07604 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.004462 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.593632 B = 6273.110444 C = 6529.976954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.187 4.187 6 C -0.155 4.155 7 C 0.164 3.836 8 N -0.539 5.539 9 C 0.064 3.936 10 C -0.119 4.119 11 C -0.123 4.123 12 C 0.020 3.980 13 H 0.036 0.964 14 C -0.514 4.514 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.902 5.902 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.298 1.298 21 H -0.263 1.263 22 C 0.077 3.923 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 7.771 -20.111 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.051 3.949 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.188 4.188 6 C -0.155 4.155 7 C 0.037 3.963 8 N -0.264 5.264 9 C -0.064 4.064 10 C -0.157 4.157 11 C -0.160 4.160 12 C 0.001 3.999 13 H 0.054 0.946 14 C -0.552 4.552 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.226 1.226 21 H -0.188 1.188 22 C -0.050 4.050 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.520 8.079 -19.841 21.429 hybrid contribution -0.426 -0.821 -0.151 0.937 sum 0.095 7.258 -19.992 21.269 Atomic orbital electron populations 1.21859 0.93108 1.02487 1.02158 1.17581 0.95292 0.93757 0.88316 1.21872 1.01323 0.94237 1.02187 1.21876 1.01319 1.00504 0.95910 1.21982 0.99946 1.00464 0.96407 1.22270 0.99924 0.98489 0.94854 1.18978 0.92151 0.96831 0.88333 1.61991 1.24432 1.36116 1.03823 1.21999 0.95729 0.92229 0.96416 1.21649 0.96604 1.00150 0.97277 1.22030 0.99882 1.00270 0.93826 1.19166 0.92732 0.94336 0.93679 0.94596 1.20996 0.95346 1.42279 0.96618 0.90899 1.24979 0.98837 0.94518 0.94740 1.69901 1.34276 1.43331 1.06565 0.86832 0.85653 0.78898 0.76821 1.20707 1.22607 1.18811 1.22126 0.98516 0.97815 0.86522 0.92051 0.91965 0.92255 0.92389 0.91928 0.92141 0.92318 0.91901 0.92397 0.88687 0.93013 0.95328 0.91880 0.92792 0.91863 0.92505 0.93505 0.92691 0.91198 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.43 37.15 0.31 -1.04 16 2 C 0.05 0.53 0.95 -157.30 -0.15 0.38 16 3 C -0.14 -1.25 8.43 37.16 0.31 -0.93 16 4 C -0.14 -1.22 8.43 37.16 0.31 -0.91 16 5 C -0.19 -2.59 11.77 -37.12 -0.44 -3.02 16 6 C -0.15 -2.35 12.36 -37.12 -0.46 -2.81 16 7 C 0.16 2.49 5.46 -6.62 -0.04 2.45 16 8 N -0.54 -9.73 4.63 -238.19 -1.10 -10.83 16 9 C 0.06 1.10 5.30 -3.83 -0.02 1.08 16 10 C -0.12 -2.18 6.09 -26.65 -0.16 -2.35 16 11 C -0.12 -2.69 4.74 -26.61 -0.13 -2.82 16 12 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 13 H 0.04 0.91 7.20 -51.93 -0.37 0.53 16 14 C -0.51 -14.42 9.14 -34.44 -0.31 -14.73 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 18 Si 0.89 22.30 24.36 -169.99 -4.14 18.16 16 19 H -0.28 -6.85 6.88 56.52 0.39 -6.46 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 22 C 0.08 1.56 4.68 -3.84 -0.02 1.54 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.34 7.98 -51.93 -0.41 0.92 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.02 7.12 -51.93 -0.37 0.65 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.09 3.36 -51.93 -0.17 0.91 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.39 8.01 -51.93 -0.42 0.97 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -30.43 328.62 -8.26 -38.68 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.69 Total: -3.10 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.05 Total: -20.90 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.33 Total: -37.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.43 -8.26 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397570408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.954 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds