Wall clock time and date at job start Mon Mar 30 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99976 * 2 1 4 4 N 1.46892 * 109.47194 * 125.27612 * 3 2 1 5 5 C 1.46905 * 111.00034 * 190.35317 * 4 3 2 6 6 C 1.50701 * 109.46986 * 71.58840 * 5 4 3 7 7 H 1.08006 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99840 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47086 * 60.00103 * 10 8 6 12 12 H 1.48494 * 109.47164 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47191 * 300.00020 * 10 8 6 14 14 C 1.46899 * 111.00411 * 66.39855 * 4 3 2 15 15 C 1.53002 * 109.47175 * 202.09337 * 14 4 3 16 16 C 1.55962 * 115.98235 * 56.60534 * 15 14 4 17 17 C 1.54581 * 104.69025 * 159.93541 * 16 15 14 18 18 C 1.55927 * 104.64559 * 0.07213 * 17 16 15 19 19 C 1.55929 * 104.49743 * 70.27333 * 18 17 16 20 20 C 1.54930 * 104.60166 * 289.70614 * 19 18 17 21 21 C 1.56950 * 116.22253 * 174.56638 * 15 14 4 22 22 H 1.08000 * 119.99989 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.00375 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.99989 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46881 * 5.26975 * 3 2 1 26 26 H 1.08998 * 109.46570 * 245.27373 * 3 2 1 27 27 H 1.08996 * 109.47177 * 191.58731 * 5 4 3 28 28 H 1.09001 * 109.46884 * 311.59392 * 5 4 3 29 29 H 0.97004 * 119.99613 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.47130 * 82.09444 * 14 4 3 31 31 H 1.08998 * 109.47103 * 322.09734 * 14 4 3 32 32 H 1.09001 * 110.32008 * 41.16521 * 16 15 14 33 33 H 1.08997 * 110.53583 * 278.82598 * 16 15 14 34 34 H 1.08998 * 110.40684 * 241.27250 * 17 16 15 35 35 H 1.09005 * 110.49472 * 118.91150 * 17 16 15 36 36 H 1.08996 * 115.92274 * 199.96477 * 18 17 16 37 37 H 1.09000 * 110.40188 * 48.51289 * 19 18 17 38 38 H 1.08999 * 110.39999 * 170.93070 * 19 18 17 39 39 H 1.09005 * 110.40882 * 241.22777 * 20 19 18 40 40 H 1.08997 * 110.53459 * 118.83772 * 20 19 18 41 41 H 1.09006 * 112.02574 * 63.65095 * 21 15 14 42 42 H 1.08994 * 112.03074 * 297.20502 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0010 1.3293 1.1306 5 6 3.5738 2.6700 1.3110 6 6 2.5186 3.5979 1.8557 7 1 1.5223 3.2285 2.0489 8 6 2.8252 4.9184 2.1073 9 7 4.0383 5.3683 1.8715 10 14 1.5170 6.0688 2.7818 11 1 1.0345 5.5570 4.0896 12 1 2.0957 7.4243 2.9631 13 1 0.3808 6.1397 1.8283 14 6 4.0582 0.3238 0.9595 15 6 4.6646 -0.0156 2.3226 16 6 3.6654 -0.5208 3.4083 17 6 4.5486 -1.2559 4.4423 18 6 5.9993 -1.1245 3.8859 19 6 6.3519 0.3835 4.0672 20 6 5.4666 1.1191 3.0302 21 6 5.7232 -1.1742 2.3416 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3589 2.1314 0.0944 26 1 2.6174 1.4048 -0.9335 27 1 4.4078 2.6176 2.0108 28 1 3.9278 3.0460 0.3511 29 1 4.2540 6.2973 2.0489 30 1 4.8344 0.7205 0.3052 31 1 3.6345 -0.5771 0.5158 32 1 2.9438 -1.2087 2.9677 33 1 3.1519 0.3193 3.8759 34 1 4.2611 -2.3050 4.5102 35 1 4.4714 -0.7776 5.4188 36 1 6.7235 -1.8434 4.2691 37 1 6.1076 0.7120 5.0774 38 1 7.4074 0.5550 3.8557 39 1 6.0876 1.6516 2.3098 40 1 4.7873 1.8102 3.5291 41 1 6.6109 -0.9266 1.7595 42 1 5.2922 -2.1268 2.0338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451057646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:51 Heat of formation + Delta-G solvation = 20.639967 kcal Electronic energy + Delta-G solvation = -19303.008178 eV Core-core repulsion = 16669.026280 eV Total energy + Delta-G solvation = -2633.981898 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92765 -36.75856 -33.19907 -32.27768 -30.01077 -29.66619 -27.63569 -26.93438 -25.15678 -23.49561 -21.75325 -20.44815 -19.35937 -19.19685 -17.74302 -16.25830 -15.59708 -14.99834 -14.80941 -14.55632 -14.46519 -13.81594 -13.65877 -12.52157 -12.30518 -12.15113 -11.98531 -11.92969 -11.78357 -11.32564 -11.02405 -10.78942 -10.76243 -10.62938 -10.59915 -10.42642 -10.34640 -10.31461 -10.10626 -9.71568 -9.60978 -9.35023 -9.09601 -8.87732 -8.34147 -7.13868 -5.97760 -3.97708 2.73865 3.35359 3.39523 3.42674 4.45937 4.77906 4.84333 4.86029 5.19211 5.37338 5.40799 5.55501 5.57457 5.65305 5.71171 5.78168 5.84749 5.89326 5.92761 6.05748 6.08318 6.13116 6.23124 6.26965 6.30930 6.42884 6.45098 6.49745 6.51290 6.58057 6.82904 6.84924 6.93822 6.99225 7.04909 7.27970 7.38355 7.43835 7.87592 8.19748 8.28389 8.62681 9.09992 9.65609 11.12630 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.008216 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.049270 B = 3407.124530 C = 4451.253009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C 0.084 3.916 4 N -0.525 5.525 5 C 0.177 3.823 6 C -0.502 4.502 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.081 3.919 15 C -0.054 4.054 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.120 4.120 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.054 0.946 28 H -0.014 1.014 29 H 0.260 0.740 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -12.656 0.705 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.149 4.149 3 C -0.043 4.043 4 N -0.249 5.249 5 C 0.053 3.947 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.047 4.047 15 C -0.055 4.055 16 C -0.134 4.134 17 C -0.159 4.159 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.158 4.158 22 H 0.113 0.887 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.399 -12.568 1.152 12.698 hybrid contribution -0.183 0.954 -0.336 1.028 sum 1.216 -11.613 0.816 11.705 Atomic orbital electron populations 1.23683 0.95968 1.01127 1.03297 1.23038 0.95878 0.98541 0.97492 1.21157 0.96031 0.95071 0.92066 1.62099 1.15924 1.07869 1.39041 1.20112 0.96209 0.82383 0.96018 1.21142 0.97502 0.93471 1.41987 0.92127 1.24955 0.95406 0.98151 0.96057 1.69948 1.19019 1.15706 1.49247 0.86634 0.81798 0.79809 0.79594 1.20256 1.21465 1.20417 1.21602 0.93456 0.95826 0.93859 1.22673 0.94170 0.94321 0.94333 1.22375 0.96515 0.99455 0.95080 1.22661 0.94955 0.99484 0.98810 1.23504 0.96513 0.96607 0.95843 1.22706 0.99100 0.94427 0.99482 1.22780 0.97816 0.96954 0.97245 1.23567 0.98534 0.98146 0.95601 0.88671 0.89360 0.88347 0.89485 0.95622 0.92786 0.99658 0.93024 0.95550 0.92088 0.92790 0.90918 0.92835 0.92267 0.89380 0.92222 0.92686 0.92309 0.89988 0.91918 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 14.32 29.01 0.42 -2.59 16 2 C -0.13 -2.12 9.17 -36.02 -0.33 -2.45 16 3 C 0.08 1.64 5.25 -4.98 -0.03 1.61 16 4 N -0.53 -11.03 4.13 -237.52 -0.98 -12.01 16 5 C 0.18 4.49 4.50 -4.97 -0.02 4.47 16 6 C -0.50 -13.91 8.44 -34.44 -0.29 -14.20 16 7 H 0.06 1.68 7.56 -52.48 -0.40 1.29 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.46 4.84 -3.82 -0.02 1.44 16 15 C -0.05 -0.90 1.16 -149.22 -0.17 -1.08 16 16 C -0.10 -1.56 5.65 -24.32 -0.14 -1.70 16 17 C -0.12 -1.66 6.21 -24.34 -0.15 -1.81 16 18 C -0.11 -1.40 5.19 -85.35 -0.44 -1.84 16 19 C -0.12 -1.77 6.22 -24.15 -0.15 -1.92 16 20 C -0.11 -1.99 3.96 -24.15 -0.10 -2.09 16 21 C -0.12 -1.67 6.11 -22.45 -0.14 -1.80 16 22 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 23 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 24 H 0.10 1.46 6.76 -52.49 -0.35 1.10 16 25 H 0.09 1.86 6.73 -51.93 -0.35 1.51 16 26 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 27 H 0.05 1.41 3.89 -51.93 -0.20 1.20 16 28 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 31 H 0.06 0.98 6.13 -51.93 -0.32 0.67 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 40 H 0.08 1.74 6.79 -51.93 -0.35 1.38 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -28.28 321.05 -9.44 -37.72 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.35 Total: 0.97 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -1.66 Total: -22.49 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.25 Total: -37.73 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.28 -9.44 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451057646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.361 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds