Wall clock time and date at job start Mon Mar 30 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99976 * 2 1 4 4 N 1.46892 * 109.47194 * 125.27612 * 3 2 1 5 5 C 1.46905 * 111.00034 * 190.35317 * 4 3 2 6 6 C 1.50701 * 109.46986 * 71.58840 * 5 4 3 7 7 H 1.08006 * 120.00091 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00018 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99840 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47086 * 60.00103 * 10 8 6 12 12 H 1.48494 * 109.47164 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47191 * 300.00020 * 10 8 6 14 14 C 1.46899 * 111.00411 * 66.39855 * 4 3 2 15 15 C 1.53002 * 109.47175 * 202.09337 * 14 4 3 16 16 C 1.55962 * 115.98235 * 56.60534 * 15 14 4 17 17 C 1.54581 * 104.69025 * 159.93541 * 16 15 14 18 18 C 1.55927 * 104.64559 * 0.07213 * 17 16 15 19 19 C 1.55929 * 104.49743 * 70.27333 * 18 17 16 20 20 C 1.54930 * 104.60166 * 289.70614 * 19 18 17 21 21 C 1.56950 * 116.22253 * 174.56638 * 15 14 4 22 22 H 1.08000 * 119.99989 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.00375 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.99989 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46881 * 5.26975 * 3 2 1 26 26 H 1.08998 * 109.46570 * 245.27373 * 3 2 1 27 27 H 1.08996 * 109.47177 * 191.58731 * 5 4 3 28 28 H 1.09001 * 109.46884 * 311.59392 * 5 4 3 29 29 H 0.97004 * 119.99613 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.47130 * 82.09444 * 14 4 3 31 31 H 1.08998 * 109.47103 * 322.09734 * 14 4 3 32 32 H 1.09001 * 110.32008 * 41.16521 * 16 15 14 33 33 H 1.08997 * 110.53583 * 278.82598 * 16 15 14 34 34 H 1.08998 * 110.40684 * 241.27250 * 17 16 15 35 35 H 1.09005 * 110.49472 * 118.91150 * 17 16 15 36 36 H 1.08996 * 115.92274 * 199.96477 * 18 17 16 37 37 H 1.09000 * 110.40188 * 48.51289 * 19 18 17 38 38 H 1.08999 * 110.39999 * 170.93070 * 19 18 17 39 39 H 1.09005 * 110.40882 * 241.22777 * 20 19 18 40 40 H 1.08997 * 110.53459 * 118.83772 * 20 19 18 41 41 H 1.09006 * 112.02574 * 63.65095 * 21 15 14 42 42 H 1.08994 * 112.03074 * 297.20502 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0010 1.3293 1.1306 5 6 3.5738 2.6700 1.3110 6 6 2.5186 3.5979 1.8557 7 1 1.5223 3.2285 2.0489 8 6 2.8252 4.9184 2.1073 9 7 4.0383 5.3683 1.8715 10 14 1.5170 6.0688 2.7818 11 1 1.0345 5.5570 4.0896 12 1 2.0957 7.4243 2.9631 13 1 0.3808 6.1397 1.8283 14 6 4.0582 0.3238 0.9595 15 6 4.6646 -0.0156 2.3226 16 6 3.6654 -0.5208 3.4083 17 6 4.5486 -1.2559 4.4423 18 6 5.9993 -1.1245 3.8859 19 6 6.3519 0.3835 4.0672 20 6 5.4666 1.1191 3.0302 21 6 5.7232 -1.1742 2.3416 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9352 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3589 2.1314 0.0944 26 1 2.6174 1.4048 -0.9335 27 1 4.4078 2.6176 2.0108 28 1 3.9278 3.0460 0.3511 29 1 4.2540 6.2973 2.0489 30 1 4.8344 0.7205 0.3052 31 1 3.6345 -0.5771 0.5158 32 1 2.9438 -1.2087 2.9677 33 1 3.1519 0.3193 3.8759 34 1 4.2611 -2.3050 4.5102 35 1 4.4714 -0.7776 5.4188 36 1 6.7235 -1.8434 4.2691 37 1 6.1076 0.7120 5.0774 38 1 7.4074 0.5550 3.8557 39 1 6.0876 1.6516 2.3098 40 1 4.7873 1.8102 3.5291 41 1 6.6109 -0.9266 1.7595 42 1 5.2922 -2.1268 2.0338 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451057646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:50 Heat of formation + Delta-G solvation = 5.525765 kcal Electronic energy + Delta-G solvation = -19303.663579 eV Core-core repulsion = 16669.026280 eV Total energy + Delta-G solvation = -2634.637299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20676 -38.36493 -35.00015 -34.00392 -31.32811 -31.08695 -29.22106 -28.47414 -26.60589 -25.36181 -23.06435 -22.18862 -20.58978 -20.45563 -19.12171 -18.37833 -17.02628 -16.67118 -16.16758 -16.13164 -15.69877 -15.41126 -15.28097 -14.30490 -14.01632 -13.57012 -13.48109 -13.30541 -13.20713 -12.95037 -12.67913 -12.61467 -12.30003 -12.06574 -11.95974 -11.82540 -11.79302 -11.65427 -11.59438 -11.27286 -11.17760 -10.92326 -10.57997 -10.51511 -10.24295 -8.90408 -8.17438 -6.25585 1.37668 1.40407 1.47057 1.48662 2.39840 3.14362 3.35002 3.62096 3.68360 3.81760 4.09518 4.24847 4.30734 4.39922 4.43009 4.51588 4.54625 4.58622 4.66493 4.69771 4.83075 4.86836 4.94837 4.98502 5.01924 5.07070 5.19913 5.23358 5.26412 5.29033 5.33856 5.41562 5.47930 5.51049 5.57977 5.66971 5.71458 5.76562 6.01516 6.14217 6.44128 6.72120 6.90208 7.42526 8.92554 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.008216 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.049270 B = 3407.124530 C = 4451.253009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.528 5.528 5 C 0.192 3.808 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.080 3.920 15 C -0.064 4.064 16 C -0.094 4.094 17 C -0.117 4.117 18 C -0.091 4.091 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.110 4.110 22 H 0.086 0.914 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.043 0.957 28 H -0.053 1.053 29 H 0.262 0.738 30 H 0.012 0.988 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -15.392 1.390 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.164 4.164 3 C -0.043 4.043 4 N -0.251 5.251 5 C 0.067 3.933 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.048 4.048 15 C -0.064 4.064 16 C -0.131 4.131 17 C -0.154 4.154 18 C -0.109 4.109 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.148 4.148 22 H 0.105 0.895 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.060 0.940 28 H -0.035 1.035 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.823 -15.323 1.832 15.454 hybrid contribution -0.044 1.835 -0.595 1.929 sum 0.779 -13.489 1.237 13.568 Atomic orbital electron populations 1.23918 0.95500 1.02320 1.00466 1.22877 0.96279 0.97218 0.99983 1.21119 0.95401 0.96547 0.91217 1.62054 1.16830 1.06105 1.40143 1.19783 0.95517 0.84604 0.93440 1.21419 0.97663 0.94370 1.41965 0.92675 1.25818 0.97578 0.99830 0.96279 1.70079 1.20955 1.16120 1.50240 0.85568 0.79135 0.77623 0.79097 1.19545 1.20815 1.19476 1.21719 0.92395 0.95630 0.95008 1.22719 0.95273 0.94967 0.93490 1.22299 0.96828 0.98510 0.95500 1.22637 0.94640 1.00483 0.97642 1.23562 0.96781 0.95365 0.95184 1.22689 0.98854 0.95881 0.98062 1.22651 0.97479 0.97083 0.97579 1.23533 0.97439 0.97431 0.96372 0.89530 0.86038 0.86151 0.92303 0.96157 0.93958 1.03533 0.92917 0.96972 0.89325 0.91981 0.94709 0.90187 0.92498 0.85926 0.92320 0.91559 0.94894 0.94517 0.91589 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.06 14.32 67.78 0.97 -4.09 16 2 C -0.15 -4.50 9.17 25.65 0.24 -4.26 16 3 C 0.08 3.40 5.25 85.56 0.45 3.85 16 4 N -0.53 -23.12 4.13 -905.38 -3.74 -26.86 16 5 C 0.19 10.44 4.50 85.56 0.39 10.83 16 6 C -0.52 -30.01 8.44 25.60 0.22 -29.79 16 7 H 0.06 3.19 7.56 -2.91 -0.02 3.17 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 10 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 C 0.08 2.92 4.84 86.30 0.42 3.34 16 15 C -0.06 -2.11 1.16 -48.76 -0.06 -2.16 16 16 C -0.09 -2.94 5.65 32.16 0.18 -2.76 16 17 C -0.12 -2.84 6.21 32.15 0.20 -2.64 16 18 C -0.09 -2.07 5.19 -7.38 -0.04 -2.11 16 19 C -0.12 -3.38 6.22 32.27 0.20 -3.18 16 20 C -0.11 -4.18 3.96 32.27 0.13 -4.05 16 21 C -0.11 -2.71 6.11 33.37 0.20 -2.51 16 22 H 0.09 2.52 7.84 -2.91 -0.02 2.50 16 23 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 24 H 0.12 3.21 6.76 -2.91 -0.02 3.19 16 25 H 0.06 2.64 6.73 -2.39 -0.02 2.63 16 26 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.04 2.39 3.89 -2.39 -0.01 2.38 16 28 H -0.05 -3.20 8.06 -2.39 -0.02 -3.22 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.01 0.47 7.96 -2.39 -0.02 0.45 16 31 H 0.09 2.71 6.13 -2.39 -0.01 2.70 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.42 7.84 -2.38 -0.02 1.41 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.03 1.36 7.73 -2.38 -0.02 1.34 16 40 H 0.04 1.68 6.79 -2.39 -0.02 1.67 16 41 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.86 321.05 3.48 -61.38 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.96 Total: 13.76 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 3.95 Total: -38.93 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.46 Total: -83.84 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -64.86 3.48 -61.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451057646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.906 kcal (2) G-P(sol) polarization free energy of solvation -64.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds